|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1957 fasta sequence
[GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGNCACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAG-TACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC-GCTCCACC-GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC-AGGCTGTCTC-ACCAC-AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT-GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG-AGGATGGG-AAGAAGATTGTTTTCCACACCTTCAGTAACACT-GGCT-GGCTTTGCT-ATGGGGTG-ATACTGGAGAATTTACA-GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG-TGTCGTCGCCT-CATGTCGACCACTACCGG-AGCAATCCAGAGCT-GT-ATACCTCTCAGCTCACTGAATTCATGG-AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL OSS14411A [GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGNCACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAG TACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGGTTCCACCGGCCCCTTCTCTGCCATGGCAGTTGCCGCTTTTGCCGNCGTCTCCTTCCTTGAGCTGCCTGACAAGNTTGTCTCAACCACAAAGTTGCCTGACAAAAaccngg ]
[+] EMBL AK099901 [ CTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGGCACCCCCCTCCCCGTCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCTTCCGCAATCTCTCCTCTCCTCTTGGCGACAGCTACCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC GCTCCACC GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC AGGCTGTCTC ACCAC AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGCT ATGGGGTG ATACTGGAGAATTTACA GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGG ]
[+] EMBL C97505 [ GGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTC GCTCCACC GCCCCCTCTCTGCCATGGCAGTTGCCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGAC AGGCTGTCTC ACCAC AAGTTGCCTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTATCAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGACTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTNACGANTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCTNGGAATCTGCCGG ]
[+] EMBL AU056704 [ CCTGCATCTTTGCCTGTCATCCACACGGTTTACCACTATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCTCGTCATCGCCGGATGTTCTGTACCTCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGGAAGGATGGGAAAGAAGATTGTTTTCCANACCTTCAGTAACACTGGGCTGGGCTTTGCTAATGGGGTGAATACTGGAGAA TTACAGGAGGgcang ]
[+] EMBL CB633883 [ CATCCTCGTCATCGCCGGATGTTCTGTACCGCT GGCATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGCT ATGGGGTG ATACTGGAGAATCTACA GAGGCAGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAG ]
[+] EMBL BI118771 [ ATCTGCCGGACCCTAAGGTCTGCGGTGACTCACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGCACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCCTCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGATGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGG AGGATGGG AAGAAGATTGTTTTCCACACCTTCAGTAACACT GGCT GGCTTTGTT ATGGGGTG ATACTGGAGAATCTACA GAGGCAGGATCCTTCTGCAATGGACAGAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTGTCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCGGCCAAAATGC ]
[-] EMBL CB633884 [ CATGAAAAAACACAGCATAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAGAACAAAAAGGAAAATGGTGGTTACTGACTCAAAcatataga ]
[-] EMBL CB677820 [ CACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAAAAGAAAGGAAAATGGTGGTTACTG ]
[-] EMBL CB678240 [ CACAGCGTAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGG ]
[-] EMBL CB671489 [ GGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCACCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCCCAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGACCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCCCTCCCGG AGCAATCCAGAGCT GT ATCCCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCCCTCCCAGGCGAAGGAGGAGGAGGAGGAGGTCCCCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTCCCATAAAATAGAGATAGGCATACATCCCAACTGTTATTTTCATTCATTTTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGCCAGGAGAGCGAGTCCACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACCCGTTGCTAGAAGAAACCAAAAAGGAAAAGGGGGGTTCCTGCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAGA ]
[-] EMBL CB638687 [ AGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGG ]
[+] EMBL BM419744 [ GAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCT GT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACC ACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACCAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAA ]
[+] EMBL AU056705 [ GAGGTGAGAGCATGCGACTTTG TGTCGTCGCCT CATGTCGACCACTACCGG AGCAATCCAGAGCTGGT ATACCTCTCAGCTCACTGAATTCATGG AGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU161211 [ aACTTTGTTGTCGTCGCCTCCATGTCGACCACTACCGGAAGCAATCCAGAGCT GTAATACCTCTCAGCTCACTGAATTCATGGAAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI809388 [ ccgCTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTAGTGGGATTGACTTTCAATCCATTGTAAACACGTTGCTAGAAGAAAAa ]
[+] EMBL CF321562 [ CTTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAATGGTGGTTACTGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL CF298666 [ TCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTATAAGAAAACAAAAAGGAAAATGGTGGTTACTGA ]
consensusID : consensus_15340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 794 fasta sequence
[CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAGCCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGCTGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACANGCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCATCTGAACTTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTACTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCTGGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCAGTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGGGGAAAAATTCCCAGAAAAGAGTGCCC]
[+] EMBL AW155126 [CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAGCCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGCTGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACANGCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCATCTGAACTTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTACTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCTGGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCAGTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGGGGAAAAATTCCCAGAAAAGAGTGCCC]
[+] EMBL CB638686 [ AGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTTTGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAATTTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACAAGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCCACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCGCCCCCTCTCT ]
consensusID : consensus_15340#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[GCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTGTGTCGTCGCCTCATGTCGACCACTACCGGAGCAATCCAGAGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGTGCCGGAGCCGC]
[-] EMBL CB678239 [GCAAGGCCCGATGTCCTAGTTGTGGAGTCTAACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGTTGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGCTATTGTCGTCGAAGCAGCCAAAATGCCCACAGCTGTACATATACAGCTCTGCTGACAGGGTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAGGTGAGAGCATGCGACTTTGTGTCGTCGCCTCATGTCGACCACTACCGGAGCAATCCAGAGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGGCGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAACTGCCATAAAATAGAGATAGGCATACATACCAACTGTTATTTTCATTCATTCTTCACTGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTTTTTAGACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCATACTCTCATTGGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGTGCCGGAGCCGC]
consensusID : consensus_15340#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 134 fasta sequence
[ACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCGT]
[+] EMBL CF331791 [ACAGGAGAGCGAGTACACTACTGTTTTCTTTCGTCTCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCTTACCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15340#0 GGAGGTGAGGTTAACTAGGTTGAGGTTGGGCGAGAGAGGGAGGAAGGGAGGCGGCGCCGN 60
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CACCCCCCTCNCCATCCCCGGCCGCCGCGCCCCCCCCCCCCCAAGCTTCCCTCCCTCCCT 120
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 TCCGCAATCTCTCCTCTCCTCTTGGCGACAGTACCAGGAAACAAGGAAGGAGCAACGCAA 180
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAATTTGACCTCTCCAATTCC 240
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 ACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAAACAACAATCTGATTATTCACAA 300
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCGCCCCCTCTCTGCCATGGCAGTTG 360
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CCGCCTTTGCCGCCGTCTCCTCCCTTGAGCTGCCTGACAGGCTGTCTCACCACAAGTTGC 420
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CTGACACAACCGTGGATGCCGAAGCTGTCGTCTCGATTCCAGCCAGCAGGCCCGATGTAT 480
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CAGCAGCACCTTCTGCTTCTGCCATGTCTCGCCTGCACTTCCTGCCACGCAATCTGCAGA 540
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CTTCGCACCCGGCTAAGGCGCCTCCTGCATCTTTGCCTGTCATCCACACGGTTTACCACT 600
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 ATGCAAAGTTTGCCAAATACTACTCGGAAGAGGAGGCAGTGACGACTGCGATGCCATCCT 660
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CGTCATCGCCGGATGTTCTGTACCTCTGGCATCTGCCGGACCCTAAGGTCTGCGGTGACT 720
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 CACATGGCAAGTCTCAGACAGTGGTGGTTCTGCTCGGGTGGTTGGGCTCGAGGCAGAAGC 780
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 ACCTCAAGAGATATGCCGATTGGTATACCTCCAGGGGTTACCATGCAGTGACCTTCACCC 840
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 TCCCCATGTCTGACATTGTTAGCTACAATGTTGGAGGGAAGGCTGAGAAGAATGTAGAGA 900
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 TGCTCTCAGAACATCTCGCTGATTGGGTTAGCGAGGAGGATGGGAAGAAGATTGTTTTCC 960
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 ACACCTTCAGTAACACTGGCTGGCTTTGCTATGGGGTGATACTGGAGAATTTACAGAGGC 1020
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 AGGATCCTTCTGCAATGGACAAAATTAAGGGCTGCGTAGTGGACTCAGCGCCTGTTGCTG 1080
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 TCCCTGATTCTCAGGTTTGGGCTTCAGGCTTCTCAGCTGCTATCATGAAAAAACACAGCG 1140
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------------------------------------------------------------
consensus_15340#0 TAGCGGCAAAAGGAGTGAAACCAAATGATGCAAGGCCCGATGTCCTAGTTGTGGAGTCTA 1200
consensus_15340#2 -----------------------------GCAAGGCCCGATGTCCTAGTTGTGGAGTCTA 31
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ------CTCTAGTCTCCTCTTGTGAATTTGTGACGACGCCTCCTTCCTTTATTGTTTCTT 54
consensus_15340#0 ACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGT 1260
consensus_15340#2 ACAAGGATCATCCCAAGCCAGCAGTTAGCGAGGCCATTCTACTTTCAGCGCTGGAGAAGT 91
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 TGTTGCAAAAGAAAAAGAAAGGCGTTTCTTCGGTTTCGTTTTTACTACCGTCCCATCAAT 114
consensus_15340#0 TGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGC 1320
consensus_15340#2 TGTTCGATGTTGTTTTAAACTACCCAGCCATCAATAGGAAGTTGTCGGGTGTGATGGAGC 151
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 TTCTGACTAACTGCCTTCTTCCCTTGTCTGACGAGTTGGATTTCTCGATTGCAGGAAACA 174
consensus_15340#0 TATTGTCGTCGAAGCAGCCAAAATGCCCAC-AGCTGTACATATACAGCTCTGCTGACAGG 1379
consensus_15340#2 TATTGTCGTCGAAGCAGCCAAAATGCCCAC-AGCTGTACATATACAGCTCTGCTGACAGG 210
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 AGGAAGGAGCAACGCAACAGTGGGAGGGATTAATTAAGCTTACCGGGCTTGGCTGTCAAT 234
consensus_15340#0 GTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAG 1439
consensus_15340#2 GTAATCCCGGCCAAGTCGGTGGAGTCGTTCGTGGAGAGTCAACGGCGAGCCGGGCATGAG 270
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 TTGACCTCTCCAATTCC-----ACCTCCACAGGGTAGGGCAACACGAGGCCGGAGACTAA 289
consensus_15340#0 GTGAGAGCATGCGACTTTGTGTCG--TCGCCTCATGTCGACCACTACCGGAGCAATCCAG 1497
consensus_15340#2 GTGAGAGCATGCGACTTTGTGTCG--TCGCCTCATGTCGACCACTACCGGAGCAATCCAG 328
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 ACAACAATCTGATTATTCACAACAACTTCTCTCCTCTCCATGATGGCTTCGCTCCACCAG 349
consensus_15340#0 AGCTGTATACCTCTCAGCTCACTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGG 1557
consensus_15340#2 AGCTGTATACCTCTCAGCTCCCTGAATTCATGGAGGACTGCGTGTTGGCCCGCTGCCAGG 388
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 CCCCTCTCTGCCATGGAGTTGCCGCCTTTGCCGCGTCTCCTCCTTGAGCTGCCTGAAGGC 409
consensus_15340#0 CGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAA 1617
consensus_15340#2 CGAAGGAGGAGGAGGAGGAGGTCACCAACTAACTAAGATGATGATGGTGGTGATGTGCAA 448
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 TGCTCACCACAAGTTGCCTGCNCACCGTGGATGCCGAGCTGCGTCTCATTCCAGCCACAN 469
consensus_15340#0 CTGCCATAAAATAGAGATA---GGCATACATACCAACTGTTATTTTCATTCATTCTTCAC 1674
consensus_15340#2 CTGCCATAAAATAGAGATA---GGCATACATACCAACTGTTATTTTCATTCATTCTTCAC 505
consensus_15340#3 ----------------ACA---GGAGAGCGAGTACACTACTGTTTTCTTTCGT------C 35
consensus_15340#1 GCCCGATGATAGCAGCACTTCTGTTCTGCATGCTCGCTGACTTCTGCACGCAT-CTGAAC 528
* * * ** * * * * * *
consensus_15340#0 TGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACTTTTT 1734
consensus_15340#2 TGGCGCTCAATTGCAAAGAGAAAAATAGGTGCCAGGAGAGGAGTATTACTAGTACCTTTT 565
consensus_15340#3 TCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 95
consensus_15340#1 TTGACCCGGTAAGCCCTCTGATNTTGCTGCATCAACGTTACACTATCAAGTTCCAATCTA 588
* * * * * * *
consensus_15340#0 TTTAGACAGGAGAGCGAGTACACTACTGTTTTC--TTTCGTCTCGTCTCATACTCTCATT 1792
consensus_15340#2 TTTAGACAGGAGAGCGAGTACACTACTGTTTTC--TTTCGTCTCGTCTCATACTCTCATT 623
consensus_15340#3 AAAAAAAAAAAAAACCCCTGTCTTGCCGTTCCT--TACCGT------------------- 134
consensus_15340#1 CTGANNAGAGATGACATGCAGCCTCCTGATNNCGGTGTCGCCTTGTTTGCGAACCAGGCT 648
* * * * * * * * **
consensus_15340#0 GGTGGGATTGACTTTCAATCAATTGTAAACACGTTGCTAGAAGAAAACAAAAAGGAAAAT 1852
consensus_15340#2 GGTGGGATTGACTTTCAATCAATTGTAAACACGTTGGT-GCCGGAGCCGC---------- 672
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 GGGACTCTTGAGTTTAAACAGGGTTCTCGGGTGGTAGCAACCCTAGAAACCATGTACTCA 708
consensus_15340#0 GGTGGTTACTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA 1912
consensus_15340#2 ------------------------------------------------------------
consensus_15340#3 ------------------------------------------------------------
consensus_15340#1 GTTCTGAGACTTCCTCAGCACTTTTCATTTAGAGGGGAAAGAAATAAACCCCTTTCCGGG 768
consensus_15340#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG 1957
consensus_15340#2 ---------------------------------------------
consensus_15340#3 ---------------------------------------------
consensus_15340#1 GGAAAAATTCCCAGAAAAGAGTGCCC------------------- 794
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||