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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1314 fasta sequence
[TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC-TTACTCCATTGGGCT-GGAACCAAGTTGAC-TGCCTGCGTGA-NACG-TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAAGGAGGAGCATTACAGAATACCAC-GCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA-GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA-CTTTGCCAACTGTGAGCTCCGGTCGAT-GGT-GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA-CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT-CAA-ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA---A---AAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF308580 [TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC TTACTCCATTGGGCT GGAACCAAGTTGAC TGCCTGCGTGAGCACG TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTC ]
[+] EMBL OSS1745A [ ACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTNTTCCTNGTTGAACCTCCTCCTCCTCNTCCTCCTCCTNAGGNGCTCCAATGGACGCCAATCCTCCTACCACCGNCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGNCTACATGTCGCCCCAACTCTTTGACGGCCACCTTTACTCCATTGGGCTGGGAACCAAGTTGACTTGCCTGCGTGA NACGTTGAAAAAAAG ]
[+] EMBL AU108653 [ GGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC TTACTCCATTGGGCT GGAACCAAGTTGAC TGCCTGCGTGA NACG TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGNCAGCTATTTCCAGTTTGAACTGNCCACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGC ]
[+] EMBL CF310406 [ CTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTCTTGCTTTTGAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAAGGAGGAGCATTACAGAATACCAC GCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCAGGGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGATGGGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTACCCCTGGAAGTATTCCAGCTGGACCTGATCTTCCTAGTGATGCTGCACCTTG ]
[+] EMBL AU092987 [ GTGATAAAAGGAGGAGCATTNCAGAATACCACGGTTNTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATG ACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGG CAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAaaaa ]
[-] EMBL CF310407 [ AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACCTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATA A A AAAA ]
[+] EMBL AU092055 [ TGTCATCCANCCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTN CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACNTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAAAAAAA ]
[+] EMBL BI798616 [ AAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATT C A ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATGTTA A AAAA ]
[+] EMBL BI799072 [ AAGCATCTTTGCCAACTGTGAGCTCCGGTCGAT GGTGGTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATTGCAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTAC AGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAA ]
[+] EMBL BI799454 [ AAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATT CAACAC GCATCTACAGATAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAA ]
[-] EMBL CF308581 [ CA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATTTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCCCGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 579 fasta sequence
[TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT-CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGGCCACCTTACTCCATT-GGGCTGGAACCAAGTTGACTGCCTGCGTGAGCAC-GTGAAAAAAAGT-GGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTT]
[+] EMBL CF309181 [TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACCTTACTCCATT GGGCTGGAACCAAGTTGACTGCCTGCGTGAGCAC GTGAAAAAAAGT GGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTT]
[+] EMBL C28493 [ CACGAGCTGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGNCCCAACTCTTTGACGGCCACCTTACTNCATTGGGGCTGGAACCAAGTTGACTGCCTTCGTTAGAACGGTGAAAAAAAGTGGGANTTGCACAAAAGATTNAGGTG ]
[+] EMBL OSC103421 [ gCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGNCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCNTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTNCNNCTCCTCCTCAGGAGCTCCAATGGACGACAAT CNTNCTACCACCGNCATGTATCCTCTCCACCGCT ]
[+] EMBL OSC103361 [ CAGCTGCTCCAGCACTCGNATCTGCACACTGTATTCGNCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGNCGCCGTGCCAAATTCCCCACCTCCCTTNTTCTTCTTCCTCGATGCACCTCCTCCTCCTCNNCCTNCTCCTCAGGAGCTCCAATGGACGCCAATACCTCCTACCANCGACATGTATCCTCTNCACCGNTGCAAAACCATCTAACTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGACTACATGT ]
[+] EMBL OSS2342A [ ACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGG ]
consensusID : consensus_15344#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence
[AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCATAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGTCGATGGTGTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCAAAAAAAAAAAAAAAA]
[-] EMBL CF309182 [AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCATAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGTCGATGGTGTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCAAAAAAAAAAAAAAAA]
consensusID : consensus_15344#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 346 fasta sequence
[AGGTGGATNGCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTAGTTACCGTGGCATTGTGCCTTGATTA--TTTTCCCAGCCCATC-GACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAAAA]
[+] EMBL AU097133 [AGGTGGATNGCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTAGTTACCGTGGCATTGTGCCTTGATTA TTTTCCCAGCCCATC GACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAAAA]
[+] EMBL AU161621 [ tgGCCTTGATTAATTTTTCCCAGCCCATCGGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAA ]
[+] EMBL BI811371 [ TAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTC ACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAA ]
consensusID : consensus_15344#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence
[AGCCACTGGAAAGTCAGAAANCTTGGGGTGAANTCAAACAGCATCTACAGATAGNACCTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATANTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA]
[+] EMBL AU108652 [AGCCACTGGAAAGTCAGAAANCTTGGGGTGAANTCAAACAGCATCTACAGATAGNACCTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATANTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACC 60
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 ATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTT 120
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 CCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCT 180
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 CCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCC 240
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 CAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTC 300
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 TTTGACGCCCACCTTACTCCATTGGGCTGGAACCAAGTTGACTGCCTGCGTGANACGTGA 360
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 AAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTA 420
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 TGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCAC 480
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 CATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCC 540
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 CACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAA 600
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 GGAGGAGCATTACAGAATACCACGCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGA 660
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 ------------------------------------------------------------
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 ATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTA 720
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 -----------------------------------------AAAGAGATAGCTATTGTAA 19
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 GGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAA 780
consensus_15344#1 ------------------------------------------------------------
consensus_15344#2 GCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCA 79
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 GCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCAGGGAGTGTCATCCAACCA 840
consensus_15344#1 ---------------------------TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATG 33
consensus_15344#2 TAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGT-CGATGGTGTTGGTC 138
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 TAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGT-CGATGGTGTTGGTC 899
consensus_15344#1 GTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATC 93
consensus_15344#2 GATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCT 198
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 ---------------------------------------------------AGGTGGATN 9
consensus_15344#0 GATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCT 959
consensus_15344#1 GGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCT 153
consensus_15344#2 GGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATT 258
consensus_15344#4 ------------------------------------------------------------
consensus_15344#3 GCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTA 69
consensus_15344#0 GGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATT 1019
consensus_15344#1 CGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGG---ACGCCAATCCT 210
consensus_15344#2 GTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGC 318
consensus_15344#4 -----------------------------------------------------AGCCACT 7
consensus_15344#3 GTTACCGTGGCATTGTGCCTTGATTATTTT-CCCAGCCCATCGACACTATTCAAGCTAGC 128
consensus_15344#0 GTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGC 1079
consensus_15344#1 CCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTAC-CTGGTCAGGCATGC 269
**
consensus_15344#2 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 372
consensus_15344#4 G--GAAAGTCAGAAANCTTG-GGGTGAANTCAA--ACAGCATCTACAGATAGNACCTTAC 62
consensus_15344#3 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 182
consensus_15344#0 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 1133
consensus_15344#1 CCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCC-CAAC 328
* ** ** * ** ** * ***** ***** * * * **
consensus_15344#2 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 428
consensus_15344#4 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ANTTTATGCTTACA-ACT 118
consensus_15344#3 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 238
consensus_15344#0 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 1189
consensus_15344#1 TCTTTGACGGCCACCTTACTCCATTGGGCTGGAACCAAGTTGACTGCCTGCGTGAGCACG 388
**** * *** ** * * ** * * * *** * **
consensus_15344#2 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 488
consensus_15344#4 TTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTAC 178
consensus_15344#3 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 298
consensus_15344#0 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 1249
consensus_15344#1 TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGA 448
* * * * * ** * ** ** * ** * *** **
consensus_15344#2 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTACTCATGTACTTTGTGT-- 543
consensus_15344#4 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTACTCATGTACTTTGTGT-- 233
consensus_15344#3 TGAACTTGACTGTAATAAACGTAC---GATTTACATAAAAAAAAAAAAAAA--------- 346
consensus_15344#0 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTAAAAAAAAAAAAAAAAA-- 1304
consensus_15344#1 CTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCAC 508
* **** * * ** * * * * * *
consensus_15344#2 TGCAAAAAAAAAAAAAAAA----------------------------------------- 562
consensus_15344#4 TGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA------------- 280
consensus_15344#3 ------------------------------------------------------------
consensus_15344#0 AAAAAAAAAA-------------------------------------------------- 1314
consensus_15344#1 CGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACT 568
consensus_15344#2 -----------
consensus_15344#4 -----------
consensus_15344#3 -----------
consensus_15344#0 -----------
consensus_15344#1 GCCCACCGTTT 579
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||