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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15347#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 754 fasta sequence
[ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT-GCCTC-GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC-CA-CGGTTTCGATTGAGACA-ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA-GAGGGCGAAGATGAAGCTGG-CCAAGAAGCTGAGGCA--GCG-GCGCAGGAGGCTTGTCCA-GAAGAGGCGG-CTGA-GGAAGAAA-GGTAGAT-GGCCACCATCCA-AGATGAAGAAGCTCAAGAACGTCTAACCAGCA-GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC-TGTTCATCCGTCTCTGTATTTCCTAAGC-TGATGCCCA-GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC-CCGATGAAAA--TTCAT-CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA]
[+] EMBL CF337909 [ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCATAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA TGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGG ]
[+] EMBL CF298199 [ gtgGATAGGCTGACGACGGGCCAAGAAGCCGAATTCCACACTGCCCGTGGCCATGGCGCTGTTTCTATACCCGACCGTCTCCTTCCTAGCCTCCT ]
[+] EMBL AK120429 [ GACGGGCCAAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTC ]
[+] EMBL AU082115 [ AAGAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGT CA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTG TCTTCTGTACACCTCTATGGTC TG TCATCC ]
[+] EMBL BE229353 [ cGAGGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTHCTCCGGCTMCCCGGCTCGCGCCAGAGCTCTCCCCGCCTCCGMCAATGTCGCCTCCACCATCCCCGGCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAVACA ATGCCGTTCGAAACTAAGMAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGMA SCG CCGSAGGAGGCTTSTCCA GAAGAGGSSG CTGA GGAAGAAA GGTAGAT GSCCACCATCCM AGATGAAGAAGCTCAAGACCGTCT ]
[+] EMBL CB683033 [ AATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTAT ]
[+] EMBL AU082116 [ CTCGCCTCNTCNTCGGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAAa ]
[-] EMBL CF335072 [ GCCAATGTCGCCTCCACCGTCCCCGCCCCAAGGTTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CACCGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGGAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATAAAACCCAATGTTTGCAAAAaaaa ]
[-] EMBL BI305425 [ CCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGTGAAGATGAAGCTGG CCAAGAAGCTAAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGCATGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTCGCCGATGAAAATTTTCATACTTGTATTTTTTAG ]
[-] EMBL BI306644 [ CACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTCTCGATTGAGACA ATGCCGCTCTAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCCATTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGA TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAGTGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAG ]
[+] EMBL CB000050 [ AAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACC CA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACAAAAAAAAA ]
[-] EMBL CF337910 [ GTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCCGTCCAT GCCTC GGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCNCA CGGTTTCGATTGAGACA ATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCA GAGGGCGAAGATGAAGCTGG CCAAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCA GAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGAAAAAAAaaaa ]
[+] EMBL BM037795 [ GGCTAGTTTCTGTCCATAGCCTCAGGCAGA GCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCC AACC CA CGGTTTCGATTGAGACACATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCACGAGGGCGAAGATGAAGCTGG CCCAGAAGCTGAGGCA GCG GCGCAGGAGGCTTGTCCACGAAGAGGCGG CTGA GGAAGAAA GGTAGAT GGCCNCCATCCACAGATGAAGAAGCTCAAGAACGTCTAACC CCANGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCACGCGAATTTTGCTGTTC AAATATGAAACAC ATGTTT C AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa ]
[+] EMBL AU082128 [ GCAAAGATGAAGCTGGCCCAAGAAGCTGAGGCATNGCGNCCTCAGGAGGCTTGTCCA GAAGAGGCGGCCTGANGGAAGAAACGGTAGATCGGCCACCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAAaaaaa ]
[+] EMBL BI796901 [ AGGCGG CTGA GGAAGAAA GGTAGAT GGCCCCCATCCA AGATGAAGAAGCTCAAGAACGTCTAACCAGCA GTGATGTCGGTC CCGTTCTTCTGTACACCTCTATGTTCATGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACAC ATGTTTGC AAATGTGATTATTTCTTTC CCGATGAAAAaaaaaa ]
[+] EMBL AU082127 [ CGTCTAACCAGCA GTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTC TGTTCATCCGTCTCTGTATTTCCTAAGC TGATGCCCA GCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTTCTTTC CCGATGAAAT TTCAT CTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAAAAACACACAAAGCCCAGTACTGAAAAAAAAAAAAAAAA]
consensusID : consensus_15347#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence
[ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA]
[+] EMBL CF196559 [ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTTCCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGTCGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCTGAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA]
[+] EMBL OSC9721 [ CGGTTTCGATTGANACAATGCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCGGTCGCTGTTCTTCNGTAC ]
consensusID : consensus_15347#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG]
[-] EMBL AA753185 [GCCCTNTGGANGGTTNTTTCACCAAGAAGGGGTAGTTCTGTCCATGCCTCGGCAGAGGCTGGCGCAGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAATGCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAAGAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAGATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCGGTCGCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGATGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAAAAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG]
consensusID : consensus_15347#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 333 fasta sequence
[AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA]
[-] EMBL CF298198 [AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAATCCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAAGAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAGATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCGGTCGGTGTTTTTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAATGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA]
consensusID : consensus_15347#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence
[TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG]
[+] EMBL AA749800 [TTTAACACAAATATCGCTGGCATCAGCTTAGGAATTACAGAGACGGATGAACAGAACATAGAGGTGTACAGAGCGCGACGACATCACTGCTGTAGACGTCTGAGCTTACTGATGTGCACTACTCTGACTAGCGCTGACTGACGCTCTGCGCTGCTAGTTGCAGTATGCTGCAGATCGTAGTAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15347#0 ATTCGCCCTTGGACACTGACATGGACTAAGGAGTAGAAAGATAGGCTGACGACGGGCCAA 60
consensus_15347#1 ------------------------------------------------------------
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 ------------------------------------------------------------
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 GAAGCCGAATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 120
consensus_15347#1 --------ATCCCACACTGCCCGTGGCCATGGCGCTGCTCCTCTCCCCGACCGTCTCCTT 52
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 ------------------------------------------------------------
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 180
consensus_15347#1 CCTCGCCTCCTCCTCCGCCTCCCCGCCTCGCGCCAGAGCTCTCCCCGCCTCCGCCAATGT 112
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 ------------------------------------------------------------
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 240
consensus_15347#1 CGCCTCCACCATCCCCGCCCCAAGGCTCCAGTGCAAGAATCTCTCCTCGCAGAGCCCTCT 172
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 -----------------------------------------------------GCCCTNT 7
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 300
consensus_15347#1 GAATGCTTCTTTCACCAAGAAGAGGCTAGTTTCTGTCCATGCCTCGGCAGAGGCTGGCGC 232
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 GGANGGTTNTTTCACCAAGAAGGGGTAG--TTCTGTCCATGCCTCGGCAGAGGCTGGCGC 65
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 360
consensus_15347#1 AGAAGAAGCTGGCACAGATCAACCAGAGGAGCCAAAACCCACGGTTTCGATTGAGACAAT 292
consensus_15347#3 --------------------AACCAGAGGAGCCAAAACCCACGCTTTGGATTGAGACAAT 40
consensus_15347#2 AGAAGAAGNTGGCACAGATCAACCAGGGGAGCCAAAACCCACGGTTTTGATTGAGACAAT 125
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 420
consensus_15347#1 GCCGCTCGAAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 352
consensus_15347#3 CCCGCTCGAAAGTAAGCAAAAGATGATCATGCAGCAAAGGGAGAAGATAAAGCTGGCCAA 100
consensus_15347#2 GCCGCTCGNAACTAAGCAGAAGATGATCATGGAGCAGAGGGCGAAGATGAAGCTGGCCAA 185
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 480
consensus_15347#1 GAAGCTGAGGCAGCGGCGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 412
consensus_15347#3 GAAGCTAAGTCAGCGGCGCAGGAGGCTTGTCCATAAAAGGCGGCTGAGTAAGAAAGGTAG 160
consensus_15347#2 GAAGCTGAGGCAGCGGNGCAGGAGGCTTGTCCAGAAGAGGCGGCTGAGGAAGAAAGGTAG 245
consensus_15347#4 ----------------TTTAACACAAATATC-GCTGGCATCAGCTTAGGAATTACAG-AG 42
* * * ** * *** ** ** * * **
consensus_15347#0 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 538
consensus_15347#1 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGTGATGTCG--GTC 470
consensus_15347#3 ATGGCCGCCATCCAAGATGAAGAAGCTCGAGAACGTCTATCCAGCAGTGATGTCG--GTC 218
consensus_15347#2 ATGGCCACCATCCAAGATGAAGAAGCTCAAGAACGTCTAACCAGCAGNGATGTCG--GTC 303
consensus_15347#4 ACGGATGA-ACAGAACATAGAGGTGTAC-AGAGCGCGACGACATCACTGCTGTAGACGTC 100
* ** * ** ** ** * * *** ** ** ** * *** * ***
consensus_15347#0 GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 596
consensus_15347#1 GCTGTTC--TTCTGTACACCTCTATGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 528
consensus_15347#3 GGTGTTT--TTTTGTACGCCTCCATGTTCGGTTCATCCGTCTGTGTATTTCTTAAGTTAA 276
consensus_15347#2 GCCGTTTCTTTCNGTACACCTNTANGTTCTGTTCATCCGTCTCTGTATTTCCTAAGCTGA 363
consensus_15347#4 TGAGCTTACTGATGTGCAC-----TACTCTGACTAGCGCTGACTG-ACGCTCTGCGCTGC 154
* * * ** * * ** * * * * ** * * * *
consensus_15347#0 TGCCCAGCGAATTTTGCTGTTCAAAATATGAAACACAATGTTTGCAAAATGTGATTATTT 656
consensus_15347#1 TGCCCAGCGAATTTTGCTGTTCNNNNTATGAAACACANTGNNNGCNNNNNAA-------- 580
consensus_15347#3 TGCCCACCGAATTTTGTTGTTCGAAATATGAAACACAATGTTTGCAAAAAAAAAAAA--- 333
consensus_15347#2 TGCCCAGCGAATTTTGCTGTTCAAAANATGAAACACAATGTTTGCGAAAAAAAAAAAAAA 423
consensus_15347#4 TAGTTGCAGTATGCTGCAGATCGTAGTAGCAG---------------------------- 186
* * ** ** * ** * *
consensus_15347#0 CTTTCCCGATGAAAATTCATCTTGTATTTTTTAGATAATGGATAAACCGGTCACCGTTAA 716
consensus_15347#1 ------------------------------------------------------------
consensus_15347#3 ------------------------------------------------------------
consensus_15347#2 AAAANACTCGAGACTGTTNCGTGGTGCCGAATTCGGCACGAGCTCNNGCCGAATCCTG-- 481
consensus_15347#4 ------------------------------------------------------------
consensus_15347#0 AAACAAAAAAAAACCAGTACTGAAAAAAAAAAAAAAAA 754
consensus_15347#1 --------------------------------------
consensus_15347#3 --------------------------------------
consensus_15347#2 --------------------------------------
consensus_15347#4 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||