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Oryza sativa
cluster # 15350 cluster # 15350       Sequences # 21       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15350#0 length = 1080 sequences # 12  
consensus_15350#1 length = 681 sequences # 3  
consensus_15350#2 length = 619 sequences # 5  
consensus_15350#3 length = 385 sequences # 1  

consensusID : consensus_15350#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1080
fasta sequence
                              [CAGCCGCAGCAGCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGC-GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT-GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT-CCTGA-CAA-AGAAAAATATGAACTTA-GGTAAAGCG-GCATTGA-TTA-CTGTTGGGGGTCTT-GCGGTCGGTGCGACAGTCGGATC-TG-CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC-ACTCCCCT-GCTGTTGTTGTCAGTGAATTTATTCTGTTCT-CCCATT-GT-TGGTCTCGCTGTTTGTTAGATAGGA-TTAAAAA-CA-AGTTGTCAGCCTGGCCTGTAATTAA-CCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAG-CAGCTGTGTATA-GCAAAC-ATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCCAAAAAAAAAAAAAA]

[+] EMBL C72352               [CAGCCGCAGCAGCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGC GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGNGTCGGGGTCCCGCGCCGC GCGGC CCTGGGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCTTGCAA GACGACCAGGANGCCGTNGCGCAAGTTGAGGCTGCTTAT AAATGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU173965             [ AGCCGCAGCAGCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGCAGGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB682866             [           GCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGC GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT CCTGA CAA AGAAAAATATGAACTTA TGTAAAGCG GCATTGA TTA CTGTTGGGGGTCTT GCGGTCGGTGCGACAGT                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF326140             [                                 CCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGC GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF325492             [                                 CCACGAAGACGATGGCCACGGCCACGGCGCTCTCCCTGAGCGGCGGCGGGGGC GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGTTGGGCGTCTTCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB682977             [                                                                  ccctctttGGAGGCGGGGGC GGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGGCGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCCT GGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGGAGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT CCTGA CAA AGAAAAATATGAACTTA GGTAAAGCG GCATTGA TTA CTGTTGGGGGTCTT GCGGTCGGTGCGACAGTCGGATC TG CTGTGGAGAATTGGCTACAGGT                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB682978             [                                                                                                                                                                                                                                                                                                                                                  AGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT CCTGA CAA AGAAAAATATGAACTTA GGTAAAGCG GCATTGA TTA CTGTTGGGGGTCTT GCGGTCGGTGCGACAGTCGGATC TG CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC ACTCCCCT GCTGTTGTTGTCAGTGAA                                                                                                                                                                                                                                                     ]
[-] EMBL CF326103             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT CCTGA CAA AGAAAAATATGAACTTA GGTAAAGCG GCATTGA TTA CTGTTGGGGGTCTT GCGGTCGGTGCGACAGTCGGATC TG CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC ACTCCCCT GCTGTTGTTGTCAGTGAA                                                                                                                                                                                                                                                     ]
[+] EMBL BI810541             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTT CCTGA CAAGAG AAAATATGAACTTA GGTAAAGCG GCATTGA TTA CT TTGGGGTTCTT  CAGTCGGTGCGACAGTCGGATC TG CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC ACTCCCCT GCTGTTGTTGTCAGTGAATTTATTCTGTTCT CCCATT GT TGGTCTCGCTGTTTGTTAGATAGGA TTAAAAA CA AGTTGTCAGCCTGGCCTGTAATTAA CCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAG CAGCTGTGTATA GCAAAC ATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCCAAAAAAAAAA    ]
[+] EMBL BI811650             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GGTGCTTCATTGTATTTCCCTGACCAA AGAAAAATATGAACTTA GGTAAAGCGCCCATTGA TTACCTGTTGGGGTTCTTCCCAGTCGGTGCGACAGTCGGATC TG CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC ACTCCCCT GCTGTTGTTGTCAGTGAATTTATTCTGTTCT CCCATT GT TGGTCTCGCTGTTTGTTAGATAGGA TTAAAAA CA AGTTGTCAGCCTGGCCTGTAATTAA CCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCA  CAGCTGTGTATA  CAAAC ATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAaaaaaaa                       ]
[+] EMBL BM421256             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    agTGAACTTATGGTAAATCG GCATTGATTTA CTGTTGGGGGTCTT NCAGTCGGNGCGACAGTCGGATCTTGCCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCTACTCCCCTGGCTGTTGTTGTCAGTGAATTTATTCTGTTCTCCCCATTGGTNTGGTCTCGCTGTTTGTTAGATAGGAGTTAAAAACCACAGTTGTCAGCCTGGCCTGTAATTAACCCGAGATGAGCTAGCTCCGAAAAAGTCACGGAAAGGCATCTTTCTCCTGAAGATGCCAGCCAGCTGTGTATANCCAACC ATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATNTAGTCTCTTTTCAGTCCCAAAAAAAAAA    ]
[+] EMBL AU173966             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTAGATAGGA TTAAAAA CA AGTTGTCAGCCTGGCCTGTAATTAA CCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTNTCCTGAAGATGCCAG CAGCTGTGTATA GCAAACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCNAAAAAAAAAAAAAA]


>consensus_15350#0 CAGCCGCAGCAGCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGG CGCTCTCCCTGAGCGGCGGCGGGGGCGGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGG CGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCC TGGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGG AGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCG CCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGG CTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTG ATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTAC CACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGA GCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTG GAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAG CAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGAACTTAGGTAAAG CGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGA ATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCA GTGAATTTATTCTGTTCTCCCATTGTTGGTCTCGCTGTTTGTTAGATAGGATTAAAAACA AGTTGTCAGCCTGGCCTGTAATTAACCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAAT GCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAAACATACATCGACGTCACTAT CCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCCAAAAAAAAAAAAAA



consensusID : consensus_15350#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 681
fasta sequence
                              [GTTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAAACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCAAATCTTGCTCTTCCTTACTGAAATTGATTGTGGAGCGTGTGGGTTGTGAGTTTCACTGTTTGACAGCAAAGTGGACTATTGATCCTTACAAGTGGTGAAGGGGGGCCACTGTGCTGATTGAAGATCTTGCAATCTGACCAACCTTGGCATCAAACTTCGTATGCAGCTGCAGTTCTTTCAGTAGGTTGAACCTGCAAAATGTATTCTTTAGTTTATCAGAATTTCTGTCATCCAAGGATGGCCCAATATTCGTGGTGAAATTGGCAGATGCCACATGCCAGTATTTGGATTGCTTTGCATCTAGTCACTGATGACATCTGAATGTGGATGCTTACAGGGGTTGGATTATTTGTTGTAGAACTCTAGTTTCCTTACCACCAACACAAACCTTATGAATGGTTTGGCAACATTCTAGATATCATGTATATATTCTACACTGTTTGTTGCAGTTTTTTTGTGCTATTACCAATTGAAGAAGTTTGGTCAGGTAATTT]

[+] EMBL CB684455             [GTTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAAACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AA753027             [GTTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATGANCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAAACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB682867             [ TTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAAACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCAAATCTTGCTCTTCCTTACTGAAATTGATTGTGGAGCGTGTGGGTTGTGAGTTTCACTGTTTGACAGCAAAGTGGACTATTGATCCTTACAAGTGGTGAAGGGGGGCCACTGTGCTGATTGAAGATCTTGCAATCTGACCAACCTTGGCATCAAACTTCGTATGCAGCTGCAGTTCTTTCAGTAGGTTGAACCTGCAAAATGTATTCTTTAGTTTATCAGAATTTCTGTCATCCAAGGATGGCCCAATATTCGTGGTGAAATTGGCAGATGCCACATGCCAGTATTTGGATTGCTTTGCATCTAGTCACTGATGACATCTGAATGTGGATGCTTACAGGGGTTGGATTATTTGTTGTAGAACTCTAGTTTCCTTACCACCAACACAAACCTTATGAATGGTTTGGCAACATTCTAGATATCATGTATATATTCTACACTGTTTGTTGCAGTTTTTTTGTGCTATTACCAATTGAAGAAGTTTGGTCAGGTAATTT]


>consensus_15350#1 GTTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATGAGCTAGC TCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGTATAGCAA ACAATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTCTCTTTT CAGTCCAAATCTTGCTCTTCCTTACTGAAATTGATTGTGGAGCGTGTGGGTTGTGAGTTT CACTGTTTGACAGCAAAGTGGACTATTGATCCTTACAAGTGGTGAAGGGGGGCCACTGTG CTGATTGAAGATCTTGCAATCTGACCAACCTTGGCATCAAACTTCGTATGCAGCTGCAGT TCTTTCAGTAGGTTGAACCTGCAAAATGTATTCTTTAGTTTATCAGAATTTCTGTCATCC AAGGATGGCCCAATATTCGTGGTGAAATTGGCAGATGCCACATGCCAGTATTTGGATTGC TTTGCATCTAGTCACTGATGACATCTGAATGTGGATGCTTACAGGGGTTGGATTATTTGT TGTAGAACTCTAGTTTCCTTACCACCAACACAAACCTTATGAATGGTTTGGCAACATTCT AGATATCATGTATATATTCTACACTGTTTGTTGCAGTTTTTTTGTGCTATTACCAATTGA AGAAGTTTGGTCAGGTAATTT



consensusID : consensus_15350#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 619
fasta sequence
                              [ACGCACACAGCCGCAGCAGCAGCAGTCGCGCACACACAGAAGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACA-AAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]

[+] EMBL AK120282             [ACGCACACAGCCGCAGCAGCAGCAGTCGCGCACACACAGAAGCCGAGGGCGCATCCTTCGACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACA AAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]
[+] EMBL CB000974             [                                                                                                                                      GCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAATGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAGGTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACA AAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]
[+] EMBL AT003522             [                                                                                                                                                                                                                                                                                      AAGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTGGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACA AAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]
[+] EMBL CB681764             [                                                                                                                                                                                                                                                                                                                                                                              ATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACA AAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]
[+] EMBL BI809757             [                                                                                                                                                                                                                                                                                                                                                                                                                 TACACTAGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACACAAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCAGTCGGTGCGACAGTCGGATCT CTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]


>consensus_15350#2 ACGCACACAGCCGCAGCAGCAGCAGTCGCGCACACACAGAAGCCGAGGGCGCATCCTTCG ACGACATCATGCGCGCCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCG TCGCGCAGGTTGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGG CTGGCAAGGTTGTTGATAACAGCATCCGCTATGCTGACGTCAAACCTGTAAAAAGTGCAG GTTCAGGCACAGTACCACAGTGGATGCAAGCAACCATGAAGAACGCACCCGTGACATTTG AGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGTGCACTGATGGTTT TCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGC CTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATA TGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCG GATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCC CTGCTGTTGTTGTCAGTGA



consensusID : consensus_15350#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 385
fasta sequence
                              [GAAGTAGTGGGATCCCCCGGGGNTGCAGGAATTCGGGCACGAGGAANGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTGGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]

[+] EMBL AT003693             [GAAGTAGTGGGATCCCCCGGGGNTGCAGGAATTCGGGCACGAGGAANGAACGCACCCGTGACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGGCACTGATGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTGGCCCTGATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGACAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTCACTCCCCTGCTGTTGTTGTCAGTGA]


>consensus_15350#3 GAAGTAGTGGGATCCCCCGGGGNTGCAGGAATTCGGGCACGAGGAANGAACGCACCCGTG ACATTTGAGGCTCCATCTTCGAGCAGCTTGGGTATCCAATCATGCGTTTATGGGCACTGA TGGTTTTCACTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTGGCCCTG ATGTGCCTGGATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGA AAAATATGAACTTAGGTAAAGCGGCATTGATTACTGTTGGGGGTCTTGCGGTCGGTGCGA CAGTCGGATCTGCTGTGGAGAATTGGCTACAGGTTGATGTTGTGCCCTTTCTAGGCGTTC ACTCCCCTGCTGTTGTTGTCAGTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      CAGCCGCAGCAGCAGCAGTCGCGCACACACGAGCCACGAAGACGATGGCCACGGCCACGG 60
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      CGCTCTCCCTGAGCGGCGGCGGGGGCGGGGGCTGCGGCGGCAGGTACCCCGCCACGGTGG 120
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      CGCGGCGGTGCTGCTGCGCCGTCCCGCGGTCGCGGCGGGGTCCCGCGCCGCGGCGGCGCC 180
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      --------------------------------------------ACGCACACAGCCGCAG 16
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      TGGGCCTGGCGGCGTCCAGGGCGGACGACTCGTCGCCCGCGCCGTTCGAGATGACGCTGG 240
consensus_15350#1      ----------------------------GTTAGATAGGATTAAAAACAAGTTGTCAGCCT 32
                                                                                   

consensus_15350#2      CAGCAGCAGTCGCGC-ACACACAGAAGCCGAGGGCGCATCCTTCGACGACATCATGCGCG 75
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      AGGGCGCGCTGAAGCTGCTGGGCGTCGCCGAGGGCGCATCCTTCGACGACATCATGCGCG 300
consensus_15350#1      GGCCTGTAATTAACCGAGATGAGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCC 92
                                                                                   

consensus_15350#2      CCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGC-----AGGT 130
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      CCAAGAACGCCGTCCTCGCATCCTGCAAGGACGACCAGGACGCCGTCGCGC-----AGGT 355
consensus_15350#1      TGAAGATGCCAGCAGCTGTGTATAGCAAACAATACATCGACGTCACTATCCTTTATACTT 152
                                                                                   

consensus_15350#2      TGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGT 190
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      TGAGGCTGCCTATGACATGCTGCTTATGCAGAGCTTATCACAGCGAAGGGCTGGCAAGGT 415
consensus_15350#1      TAAAGATAACTTGTATCTAGTCTCTTTTCAGTCCAAATCTT-GCTCTTCCTTACTGAAAT 211
                                                                                   

consensus_15350#2      TGTTGATAACAGCATCCGCTATGCTGACGTCAA-ACCTGTAAAAAGTGCAGGTTCAGGCA 249
consensus_15350#3      -----------------------------------------GAAGTAGTGGGATCC--CC 17
consensus_15350#0      TGTTGATAACAGCATCCGCTATGCTGACGTCAA-ACCTGTAAAAAGTGCAGGTTCAGGCA 474
consensus_15350#1      TGATTGTGG-AGCGTGTGGGTTGTGAGTTTCACTGTTTGACAGCAAAGTGGACTATTGAT 270
                                                                      *  *  *      

consensus_15350#2      CAGTACCA-CAGTGGATGCAAGCAACCATGAAGAACGCAC-CCGTGACATTTGA--GGCT 305
consensus_15350#3      CGGGGNTG-CAG-GAATTCGGGCACGAGGAANGAACGCAC-CCGTGACATTTGA--GGCT 72
consensus_15350#0      CAGTACCA-CAGTGGATGCAAGCAACCATGAAGAACGCAC-CCGTGACATTTGA--GGCT 530
consensus_15350#1      CCTTACAAGTGGTGAAGGGGGGCCACTGTGCTGATTGAAGATCTTGCAATCTGACCAACC 330
                       *          * * *     **         **  * *   * **  ** ***    * 

consensus_15350#2      CCATCTTCGAGCAGCTTGGGTATC--CAATCATGCGTTTATGGTGCACTGATGGTTTTCA 363
consensus_15350#3      CCATCTTCGAGCAGCTTGGGTATC--CAATCATGCGTTTATGG-GCACTGATGGTTTTCA 129
consensus_15350#0      CCATCTTCGAGCAGCTTGGGTATC--CAATCATGCGTTTATGGTGCACTGATGGTTTTCA 588
consensus_15350#1      TTGGCATCAAACTTCGTATGCAGCTGCAGTTCTTTCAGTAGGTTGAACCTGCAAAATGTA 390
                           * ** * *  * *  * * *  ** *  *     ** *  * **        *  *

consensus_15350#2      CTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTG 423
consensus_15350#3      CTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTGGCCCTGATGTGCCTG 189
consensus_15350#0      CTTATGCTAGTGGAAGCGCTACATCTTTACCATCAACATACACTAGCCCTGATGTGCCTG 648
consensus_15350#1      TTCTTTAGTTTATCAGAATTTCTGTCATCCAAGGATGGCCCAATATTCGTGGTGAAATTG 450
                        *  *     *   **   * *     * * *  *     ** *   * ** **    **

consensus_15350#2      GATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGA 483
consensus_15350#3      GATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGA 249
consensus_15350#0      GATTTATCTTAGCAACAGGATTTGGTGCTTCATTGTATTTCCTGACAAAGAAAAATATGA 708
consensus_15350#1      GCAGATGCCACATGCCAGTATTTGG-ATTGCTTTGCATCTAGTCACTGATGACA-TCTGA 508
                       *      *       *** ******   * * *** ** *  * **  *  * * * ***

consensus_15350#2      ACTTAGGTA---AAGCGGCATTGATTACT-GTTGGGGGTCTTGCGGT-CGGTGCGACAGT 538
consensus_15350#3      ACTTAGGTA---AAGCGGCATTGATTACT-GTTGGGGGTCTTGCGGT-CGGTGCGACAGT 304
consensus_15350#0      ACTTAGGTA---AAGCGGCATTGATTACT-GTTGGGGGTCTTGCGGT-CGGTGCGACAGT 763
consensus_15350#1      ATGTGGATGCTTACAGGGGTTGGATTATTTGTTGTAGAACTCTAGTTTCCTTACCACCAA 568
                       *  * * *    *   **  * ***** * ****  *  **   * * *  * * **   

consensus_15350#2      CGGATCTGCTGTGGA-GAATTGGCTACAGGTT-GATGT--TGTGCCCTTTCTAGGC-GTT 593
consensus_15350#3      CGGATCTGCTGTGGA-GAATTGGCTACAGGTT-GATGT--TGTGCCCTTTCTAGGC-GTT 359
consensus_15350#0      CGGATCTGCTGTGGA-GAATTGGCTACAGGTT-GATGT--TGTGCCCTTTCTAGGC-GTT 818
consensus_15350#1      CACAAACCTTATGAATGGTTTGGCAACATTCTAGATATCATGTATATATTCTACACTGTT 628
                       *  *     * ** * *  ***** ***   * *** *  ***     *****  * ***

consensus_15350#2      -----CACTCCCCTGCTGTTGTTGTCAGTGA----------------------------- 619
consensus_15350#3      -----CACTCCCCTGCTGTTGTTGTCAGTGA----------------------------- 385
consensus_15350#0      -----CACTCCCCTGCTGTTGTTGTCAGTGAATTTATTCTGTTCTCCCATTGTTGGTCTC 873
consensus_15350#1      TGTTGCAGTTTTTTTGTGCTATTACCAATTGAAGAAGTTTGGTCAGGTAATTT------- 681
                            ** *    *  ** * **  ** *                               

consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      GCTGTTTGTTAGATAGGATTAAAAACAAGTTGTCAGCCTGGCCTGTAATTAACCGAGATG 933
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      AGCTAGCTCCGAAAAAGTCACGAAAATGCATCTTTCTCCTGAAGATGCCAGCAGCTGTGT 993
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      ------------------------------------------------------------
consensus_15350#3      ------------------------------------------------------------
consensus_15350#0      ATAGCAAACATACATCGACGTCACTATCCTTTATACTTTAAAGATAACTTGTATCTAGTC 1053
consensus_15350#1      ------------------------------------------------------------
                                                                                   

consensus_15350#2      ---------------------------
consensus_15350#3      ---------------------------
consensus_15350#0      TCTTTTCAGTCCCAAAAAAAAAAAAAA 1080
consensus_15350#1      ---------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)