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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15351#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 938 fasta sequence
[CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC-TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG-TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT]
[+] EMBL CF293744 [CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCA CTGGAGTG ]
[+] EMBL AK120268 [ CAGCGGCACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT]
[+] EMBL CF329864 [ CAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTGGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGAT ]
[+] EMBL AK061939 [ CGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCC ]
[+] EMBL CF332938 [ CTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTG ]
[+] EMBL CF332541 [ CTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCG ]
[+] EMBL CB684419 [ CCCTCCCCCCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTC ]
[+] EMBL C26996 [ TCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGNAGGAGGTGATCGGNAAGCTCAACGTCCGCNTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTNAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTNTGGAATNAAGTACTTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTANAACTTGAAGTTTTTCGATGAGGTTAAATTC ]
[+] EMBL AU065993 [ CGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCNTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTNTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTACTTGCAGCTC ]
[+] EMBL OSS12722A [ AACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAG TGAGTTCAACGTGACTTACATCTACGATGCTGCTAAGNTGGATCTAAAGCATGTTTCTGACGGGGC ]
[-] EMBL CB684420 [ CGTCCTCTCCTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAATGAAGTAC TGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAG TTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAA GGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTAGTTCCAATAGTAATGCTTTCGATGTCTAAAAAA ]
consensusID : consensus_15351#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 858 fasta sequence
[AGTTTAGTGTTTTGCATTGTTGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCGGATGCTCATCAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTTACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATT-CCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAAT-CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG-TTATATTTGTACTCCTT-AGT-GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG-AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAAAAAAAAACCTCGTGCC]
[-] EMBL CB674616 [AGTTTAGTGTTTTGCATTGTTGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCGGATGCTCATCAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTTACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATT CCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAAT CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAga ]
[-] EMBL CF332540 [ GAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCCAATCCTGTCTGGAATGAAGTACTGCAGCTCGCAGTCACAAATCCCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTAaaaaa ]
[-] EMBL CF332937 [ ACTGCAGCTCGCAGTCACAAAT CCTACAAAGCCAGTAAAACTTGAAGTTTTCGATGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTAaaaaa ]
[-] EMBL CF325491 [ CAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAGAAAAAAAAATGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAAAAAAAAACCTCGTGCC]
[+] EMBL OSC29101 [ AGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCA NTGGTCTCTGAATNTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTTATATTTGTACTCCTTNAGTGGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCT ]
[-] EMBL CF293745 [ GATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGACTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAA ]
[+] EMBL AU088694 [ taATCTTGGCGCAGAGAGCCNCGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCNCTCTGAAGCTGANCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCAGGTGTTACCCTCTGAGCAGTGTCCGNTGGTCGTCGATGGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGG TTATATTTGTACTCCTT AGT GTCAAGTGTNTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGAGCGAGATGTAAATTAAG AATTCAGGTGTTCATTATGTTGTAGAATTGTCCGATTTGTTCCAATAGTAATGCTTTCGATGTCTAAAAAAAAAA ]
consensusID : consensus_15351#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 791 fasta sequence
[CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTCCCTTAATTTCTTCCTTTCTTGCGTTTGGGGATCCTTCGTGACTGACCTCCGCATTTTGGGGATCCGGGGCTCGGGACGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCGTCCGCTTTGTCCGGGACCGGGGTGCGAATCTGTCGCTGTGTGTGCTCACAAGGTGTTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGGCCTTTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAATTCGCATTGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGGTCAGTTGTCCATGGACCTGCAAAACTGGTTAATCAGAACAAATTTTGTTAACTAAGGGGTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAATGACAAATCTTGTCAGCTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTGTAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTGATGCTCAAAATGG]
[+] EMBL CB674615 [CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGCGGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGGCTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTCCTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTCCCTTAATTTCTTCCTTTCTTGCGTTTGGGGATCCTTCGTGACTGACCTCCGCATTTTGGGGATCCGGGGCTCGGGACGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCGTCCGCTTTGTCCGGGACCGGGGTGCGAATCTGTCGCTGTGTGTGCTCACAAGGTGTTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGGCCTTTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAATTCGCATTGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGGTCAGTTGTCCATGGACCTGCAAAACTGGTTAATCAGAACAAATTTTGTTAACTAAGGGGTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAATGACAAATCTTGTCAGCTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTGTAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTGATGCTCAAAATGG]
consensusID : consensus_15351#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNCAACCTTNTTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAAAAGATCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGNAAACTNAAGTTNCNGTGGGGTAAATCCCGCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAACTCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGGCCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGTTNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA]
[-] EMBL AI096164 [TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNCAACCTTNTTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAAAAGATCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGNAAACTNAAGTTNCNGTGGGGTAAATCCCGCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAACTCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACGATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGGCCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGATGGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTTTCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGTTNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA]
consensusID : consensus_15351#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[TTCCAATCCTNTCTGGAATGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGATGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACGATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCNGGTGTTACCCTCTGAGCNGTGTCCGATGGTCGTCGATGGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTTTCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGNGCGNNATGTAAATTAAGAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU031586 [TTCCAATCCTNTCTGGAATGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGATGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTCAACGTGACTGACATCTACGATGCTGCTAAGCTGGATCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACGATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGGAAAAATGGCAAGGTCGTCCAAGACATCACTCTGAAGCTGAGCAAGGTTGACAGTGGCCTGATCGTGCTGCAGCTGGAGTGGGTTCACGTCCCNGGTGTTACCCTCTGAGCNGTGTCCGATGGTCGTCGATGGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAGACTATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTTTCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGTGTCACAATAAGAATCGACCTGCTGAGGTCATCTGGNGCGNNATGTAAATTAAGAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15351#1 ----------------------------------------AGTTTAGTGTTTTGCATTGT 20
consensus_15351#4 ------------------------------------------------------------
consensus_15351#3 ------------------------------------------------------------
consensus_15351#0 CACCAGCGACACCTACTACTCCTCCTCCCCTCCCCTCTCGAAACGCGGCTTCGACATGGC 60
consensus_15351#2 --------------------------CCCCTCCCCTCTCGAAACGCGGCTTCGACATGGC 34
consensus_15351#1 TGATTATGTAAACTGTAGCTTTTGCAGAGGCATACATGTTATATTCTTCG-GATGCTCAT 79
consensus_15351#4 ------------------------------------------------------------
consensus_15351#3 ------------------------------------------------------------
consensus_15351#0 GGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGG 120
consensus_15351#2 GGCGGCGGCGGCGCACAAGGAGGAGGTGATCGGGAAGCTCAACGTCCGCGTGGTGCGGGG 94
consensus_15351#1 CAATTTTTTATATGTTACTCCCAATCTTACCATATTTTTTTATCACTGAAGTGTTCTTTT 139
consensus_15351#4 ------------------------------------------------------------
consensus_15351#3 ------------------TCCCCCCCNTGGGAATTNGNNCCCCCCCCCCGGGGCCGGTNC 42
consensus_15351#0 CTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTC 180
consensus_15351#2 CTCCAACCTCATCATCGCCGACCCGCTCACCCACACCAGCGACCCCTACGTCGTCCTCTC 154
consensus_15351#1 ACTGATGGTATAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAA 199
consensus_15351#4 ------------------------------------------TTCCAATCCTNTCTGGAA 18
consensus_15351#3 AACCTTN-TTCAATCNNNNANTNCCCCTTTCTCCCCCCAAANTACCCNTCCCAA--AAGA 99
consensus_15351#0 CTACGGCCCACAGAAAGTGAAGACCAGTGTCCAGAAGAAGAATTCCAATCCTGTCTGGAA 240
consensus_15351#2 CTACGGCCCACAGGTCCGCCACCGCCATACCCATGTTC----CCTTAATTTCTTCCTTTC 210
*
consensus_15351#1 TGAAGTACTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAGTTTTCGA 259
consensus_15351#4 TGAAGTACTGCAGCTCGCCGTCACAAATCCTACAAAGCCCGTAAAACTTGANGTTTTCGA 78
consensus_15351#3 TCACCTTCTGATAANTCCCGCNCCAGCNAACCTCCAGCCGN--AAACTNAAG--TTNCNG 155
consensus_15351#0 TGAAGTACTGCAGCTCGCAGTCACAAATCCTACAAAGCCAGTAAAACTTGAAGTTTTCGA 300
consensus_15351#2 TTGCGTTTGGGGATCCTTCGTGACTGA-CCTCCGCATTTTG-GGGATCCGGGGCTCGGGA 268
* * * * * * * *
consensus_15351#1 TGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 318
consensus_15351#4 TGCGGATAAATTCACAGCNGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 137
consensus_15351#3 TG-GGGTAAATCCC--GCCGATGCCACCATGGCCTTAGCTGAGTTCCAACGTGACTGAAC 212
consensus_15351#0 TGAGGATAAATTCACAGCAGATGACAGCATGGGCGTAGCTGAGTTC-AACGTGACTGACA 359
consensus_15351#2 CGGGGGGGTCTTCGATCGATCTGCCGCGGTATCCGTACGTGAAGCCAAGAAATGTTGGCG 328
* ** * * ** * * * ** *** * * **
consensus_15351#1 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 377
consensus_15351#4 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCNGGATCAAGACG 196
consensus_15351#3 TCTACGATGCTGCTAAGCTGGAATCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 272
consensus_15351#0 TCTACGATGCTGCTAAGCTGGA-TCTAAAGCATGTCTCTGACGGGGCCAGGATCAAGACG 418
consensus_15351#2 TCCGCTTTG-TCCGGGACCGGGGTGCGAATC-TGTCGCTGTGTGTGCTCA---CAAGGTG 383
** * ** * * * ** * ** * **** *** * ** **** *
consensus_15351#1 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 436
consensus_15351#4 ATCTACCCNGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 255
consensus_15351#3 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCCGAGAGCCACGTTTCATGGGAAAAATGG 332
consensus_15351#0 ATCTACCCAGTTGGTGTGAACTATCTTGGCGCAGAGAGCCACGTTTCATGG-AAAAATGG 477
consensus_15351#2 -TTTGATAAGATGGCGACATGTTCGCGACTTTCCAGGGATTTTTTTTTTGG------CCT 436
* * * *** * * * ** * *** ***
consensus_15351#1 C-AAGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 492
consensus_15351#4 C-AAGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 311
consensus_15351#3 CCAAGGTCGTTCAAGACATCACTCTGAAGCTGAGCCAAGGTTGACCAGTGGCCCTGATCG 392
consensus_15351#0 CAAGGGTCGTCCAAGACATCACTCTGAAGCTGAGC-AAGGTTGAC-AGTGGCC-TGATCG 534
consensus_15351#2 TTCGATTTGATAGGGTGACTGACTGCCAGTTGAGCTAAACAGGACGCTTAAAT-TCGCAT 495
* * * * ** ***** ** *** * *
consensus_15351#1 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-AGGTGTTACCCTCTGAGCAGTGTCCGA 547
consensus_15351#4 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-NGGTGTTACCCTCTGAGCNGTGTCCGA 366
consensus_15351#3 TGCTGCAGCTGGAG----TGGGTTCACGTCCCCAGGTGTTACCCTCTGAGCAGTGTCCGA 448
consensus_15351#0 TGCTGCAGCTGGAG----TGGGTTCACGTCCC-AGGTGTTACCCTCTGAGCAGTGTCCGA 589
consensus_15351#2 TGCTGAATTTAAAAATTCTGAATTTTGGTCGGTTTGAGTTGGCCTTCAGTCCCAGTTTGG 555
***** * * * ** ** *** * *** *** * ** *
consensus_15351#1 T-GGTCGTCGAT---GGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 602
consensus_15351#4 T-GGTCGTCGAT---GGAGCTGCNGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 421
consensus_15351#3 T-GGTCGTTCGCATGGNAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAGCACT 507
consensus_15351#0 T-GGTCGTCGAT---GGAGCTGCAGGTGCAGCTGGTCTCTGAATGTGATATTGTAG-ACT 644
consensus_15351#2 TCAGTTGTCCAT---GGACCTGCAAAACTGGTTAATC--AGAACA-AATTTTGTTA-ACT 608
* ** ** * * **** * * ** *** ** **** ***
consensus_15351#1 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 662
consensus_15351#4 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTNGTT 481
consensus_15351#3 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 567
consensus_15351#0 ATGCGTGTGGACGTTGTTTGCAATGTGTACCTCCGATATGTGTGCTGTTGGTTTGTAGTT 704
consensus_15351#2 AAGGG-GTAGTTATGCTTTGACGAATTTTGAACTGAAGAGCAGAGTAACAAGCCCTGTAA 667
* * * ** * * **** * * * ** * * *
consensus_15351#1 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 721
consensus_15351#4 TCTGCGGTTATATTTGTACTCCTTNGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 540
consensus_15351#3 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 626
consensus_15351#0 TCTGCGGTTATATTTGTACTCCTTAGTGTCAAGTGTTTGTGTCTATCAGTGT-GTCACAA 763
consensus_15351#2 TGACAAATCTTGTCAG--CTAAGGGATATACAGCTTCGCAGAACATCACTCTTAACTCTG 725
* * * * * ** * * ** * * **** * * * *
consensus_15351#1 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGAGCGAGATGTAAATTAAGAATTC-AGGTGT 778
consensus_15351#4 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGNGCGNNATGTAAATTAAGAAAAA-AAAAAA 597
consensus_15351#3 TAAGAATCGAACCTGCTGAGGTNCATCTGGACCGAGATGTAAATTAAGAATTNCAGGTGT 686
consensus_15351#0 TAAGAATCGA-CCTGCTGAGGTC-ATCTGGAGCGAGATGTAAATTAAGAATTC-AGGTGT 820
consensus_15351#2 TAATGACAAATCTTGGATAGTCTTTCATGACGCATCACACGAATGCTGAATTG---ATGC 782
*** * * * ** ** ** * * *** ***
consensus_15351#1 TC-ATTATGTTGTAGAATTGTCCGATTTGTTCC-AATAGTAATGCTTTCGATGTCTAAAA 836
consensus_15351#4 AA-AAAAAAA-------------------------------------------------- 606
consensus_15351#3 TNCATTATGTTGTAGAATTGTCCGATTTGTTNCCAATAGTAA------------------ 728
consensus_15351#0 TC-ATTATGTTGTAGAATTGTCCGATTTGTTCC-AATAGTAATGCTTTCGATGTCTAAAA 878
consensus_15351#2 TC-AAAATGG-------------------------------------------------- 791
* *
consensus_15351#1 AAAAAAAAAAAAACCTCGTGCC-------------------------------------- 858
consensus_15351#4 ------------------------------------------------------------
consensus_15351#3 ------------------------------------------------------------
consensus_15351#0 AATAGAAGTGTTCCAACTTTTTTATTCCATGATCTTTAAAAAAAAAGTAATACTTTCGAT 938
consensus_15351#2 ------------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||