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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 928 fasta sequence
[TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTATGTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTCTGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACGTAAAACACAGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTGACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT]
[+] EMBL CB679157 [TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTATGTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTCTGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACGTAAAACACAGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTGACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAAAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAAAGCTCGAGCAAAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCAAAGCCTTGGCCGCAAATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCAAGGCCAAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACAACGGGAACGCGCGGCTGCACGTCTTGCAAACAAAGTCCC ]
[-] EMBL AY305864 [ TGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGT ]
[-] EMBL AK119690 [ ATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT]
[-] EMBL AY286473 [ CAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTC ]
[+] EMBL CB966330 [ AGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
[+] EMBL CB967030 [ AGGTGGCTGGTCCGGTGGCCG CCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTC TGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
[+] EMBL BU673467 [ GCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
[+] EMBL BU673802 [ CTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACG AGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
[+] EMBL BI306687 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGC ]
[+] EMBL BI306031 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGC ]
[+] EMBL CB965506 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGGT ]
[+] EMBL CB965847 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
[+] EMBL CB965279 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG ]
consensusID : consensus_15368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 866 fasta sequence
[CGAGTTTTTTTTTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGATTGAGAGAGAGATTTTTGGTTGGGGGGAGAT]
[-] EMBL CF303437 [CGAGTTTTTTTTTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGC ]
[-] EMBL AK068861 [ GAAAGAATTATATTACATCTGTGTGTGTATATACATCTGAACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCAAACGCTAATG AAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACTTTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACACACTGCGTCAGTTCAAAACTTGGACGAAACTAATGGAGACCAGCGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGATTGAGAGAGAGATTTTTGGTTGGGGGGAGAT]
[-] EMBL AY286474 [ CGGTAACTAGGCGAACAACTCCAGCAACACCGGTGGCTCGGCGGCGATCCCCTCCGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCGGCGGAGGATCCACCGCCGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCCGCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGCTTGTCCCTGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGTCGAGCCCGTTGCTCCGGCCGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTGGAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGCCACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGACGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTCCTCCTGCCTCGGGTGCTTCATCt ]
consensusID : consensus_15368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence
[GGGCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAAGCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCAGGCGCTCGGCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCG-GACGCCGCCG-GCGACGACCCGCGCCGC-GGCTTCTTCC-GCTCGCCG-C-TATCCGCGGCAGCGCCG-AGCGTGAGCGACAGCGA-GAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGA]
[-] EMBL CB679156 [GGGCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAAGCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCAGGCGCTCGGCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCG GACGCCGCCG GCGACGACCCGCGCCGC GGCTTCTTCC GCTCGCCG C TATCCGCGGCAGCGCCG AGCGTGAGCGACAGCGA GAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGA]
[+] EMBL BU673650 [ TGGTCCGGTGGCCGCCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGAGACGCCGCCGTGCGACGACCCGCGCCGCTGGCTTCTTCCTGCTCGCCGACATATCCGCGGCAGCGCCGAAGCGTGAGCGACAGCGACGAGG ]
consensusID : consensus_15368#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[CGTTTCGTTTTTTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT]
[-] EMBL CA755660 [CGTTTCGTTTTTTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAAATCTCTATCTGAAAAAAGAAAAATAATGAATGCAATAGCCACAATCGTGCACCAATATGTACAGGCAGCAATCGCACGAATCTAAACGAAGAGCTCGAGCAGAACGGGCGGCGCGTGCACCGCCGCGGCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCCGCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGCCGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCGCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT]
consensusID : consensus_15368#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TTTGAACTGACGCAGTGTGTGTCACCATTAATTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGATCTTGTAACTATGATAGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTTTTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAGATGTAATATAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGTTTGTGCCAGAAATAAATTCAGCGCGCTGTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF309128 [TTTGAACTGACGCAGTGTGTGTCACCATTAATTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGATCTTGTAACTATGATAGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTTTTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAGATGTAATATAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGTTTGTGCCAGAAATAAATTCAGCGCGCTGTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15368#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[AAGGGAATAGCTGCGGCGCGCAGGTGGCTGGTCGGTGGCCGCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG]
[+] EMBL CB964817 [AAGGGAATAGCTGCGGCGCGCAGGTGGCTGGTCGGTGGCCGCCAGCGCCTGGAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGCCGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAAAGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGCTAGCTAGCTTCTGACTCGATCGAGAGAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15368#0 TCCTTTTTATTTTTTTTTTTTTTTTCTGTAACAGGTGGTATGGCCTTTAATTATGTGTAT 60
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 ----------------------------------------------------------GG 2
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 -------------------------------------------------CGAGTTTTTTT 11
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 GTACACAAAACAAACTACGCTTCCATCATGTGAGTAAAATCTCTGTTATCTAAATTATTC 120
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 GCTCGGGTTTGGCCTCGCCGCCGCCACGGCCAAGGAGACCCCCAAGAAGGTGCAGGAGAA 62
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 TTTTTTTTTTTAGCTATGAATGAAGAAATTATATTACATCTGTGTGTGTATATACATCTG 71
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 TGGCATGTACATGTGTGGTACATATATAAATCAATATTTGAAAACAGGGAACAATGGACG 180
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 GCCGGCGGCGGCGGCGACCCACGAGTGCCACATCTGCGGCCAAGGCTTCGAGATGGGCCA 122
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 AACTCAACAAATCTCCACCAAACGGTTCAAAAACTGACCGATTCAAAACCGAACAACCCA 131
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 TAAAACAC-AGCCGATTCGATCGAACAGTCTGACACAAATAAAATTCGATTGGAAAATTG 239
consensus_15368#3 ----------------------------------------------CGTTTCG---TTTT 11
consensus_15368#2 GGCGCTCG-GCGGCCACATGCCCCGCCCCCGCGAGGAGGCCGCCGCCGCCGCCGCGGCCG 181
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 AACGCTAATGAAAAAAAAAATTAAACCCCTATCATAGTTACAAGATCGATGAACCTGACT 191
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 ACTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAA 299
consensus_15368#3 TTTAATGAATGAATGAATGAATTAGTATATCCAGCGTAAAGCAATTCCTACAATGGTAAA 71
consensus_15368#2 CCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGCGGCGGCGAGGCCGAGCG 241
consensus_15368#5 ----------------------------------------------------------AA 2
consensus_15368#1 TTTTTTTTCTAGACATGTACATGAACTAATTAATGGTGACACA--CACTGCGTCAGTTCA 249
consensus_15368#4 -----------------------------TTTGAACTGACGCAGTGTGTGTCACCATTAA 31
consensus_15368#0 ATCTCTATCTGAAAA-AAGAAAAATAATGAATGCAATAGCCACA-ATCGTGCACCAATAT 357
consensus_15368#3 ATCTCTATCTGAAAA-AAGAAAAATAATGAATGCAATAGCCACA-ATCGTGCACCAATAT 129
consensus_15368#2 CGAGCCCGTGGCGGC-CGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTGGAACGAC 300
consensus_15368#5 GGGAATAGCTGCGGC--GCGCAGGTGGCTGGTC-GGTGGCCGCC-AGCGCCTGGAACGAC 58
consensus_15368#1 AAACTTGGACGAAACTAATGGAGACCAGCGGTA-ACTAGGCGAACAACTCCAGCAACACC 308
consensus_15368#4 TTAGTTCATGTACATGTCTAGAAAAAAAAGTCAGGTTCATCGAT--CTTGTAACTATGAT 89
* * * *
consensus_15368#0 GTACAGGCAGCAATCGCACGAATC--TAAACGAAGAGCTC------GAGCAGAACGGGCG 409
consensus_15368#3 GTACAGGCAGCAATCGCACGAATC--TAAACGAAGAGCTC------GAGCAGAACGGGCG 181
consensus_15368#2 GGGAACGC-GCGGCTGCACGTCTTG-CAGACGAAGTCCCCACTCCCGGACGCCGCCGGCG 358
consensus_15368#5 GGGAACGC-GCGGCTGCACGTCTTG-CAGACGAAGTCCCCACTCCCGGACGCCGCCGGCG 116
consensus_15368#1 GGTGGCTCGGCGGCGATCC--CCTC-CGGCCGCGCGTCGCAGCGCCAGACCCAGTCGTCG 365
consensus_15368#4 AGGGGTTTAATTTTTTTTTTCATTAGCGTTTGGGTTGTTCGGTTTTGAATCGGTCAGTTT 149
* * *
consensus_15368#0 GCG-CGTGCACCGCCGCG-GCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCC 467
consensus_15368#3 GCG-CGTGCACCGCCGCG-GCGGCGGCGGCGGCCTCCTCGCGGTGGCGGCGCATGTGGCC 239
consensus_15368#2 ACGACCCGCGCCGCGGCT-TCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGC 417
consensus_15368#5 ACGACCCGCGCCGCGGCT-TCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGTGAGC 175
consensus_15368#1 GCG-GAGGATCCACCGC---CGGCGGCGGCCATCTCCTCGCGGTGGCGCCGCATGTGTCC 421
consensus_15368#4 TTGAACCGTTTGGTGGAGATTTGTTGAGTTCAGATGTATATACACACACAG-ATGTAATA 208
* * * * * * * **
consensus_15368#0 GCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGC 527
consensus_15368#3 GCCGAGCGCCTGGCCCATCTCGAAGCCTTGGCCGCAGATGTGGCACTCGTGGGTCGCCGC 299
consensus_15368#2 GAC-AGCGAGAGGCTGATCACCTCGCCGTC-CCTCGGATGCT-TGGTCATGG-TCAAGAA 473
consensus_15368#5 GAC-AGCGAGAGGCTGATCACCTCGCCGTC-CCTCGGATGCT-TGGTCATGG-TCAAGAA 231
consensus_15368#1 GCCGAGCGCCTGGCCCATCTCGAAGCCGAGGCCGCAGATGTGGCACTCGTGC-TTGTCCC 480
consensus_15368#4 TAATTCTTTCATTCATAGCTATACCTCTTGTAAATATATGCAACATTTATGT-TTGTGCC 267
* * * * *** * ** *
consensus_15368#0 CGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGC-GGCGGCGAGGC 586
consensus_15368#3 CGCCGCCGGCTTCTCCTGCACCTTCTTGGTGGTCTCCTTGGCCGTGGC-GGCGGCGAGGC 358
consensus_15368#2 AGAAACCGAACGAACTGGAG----ATCGATCGAACACAAGATGATCGA-CGAGACGAGTT 528
consensus_15368#5 AGAAACCGAACGAACTGGAG----ATCGATCGAACACAAGATGATCGA-CGAGACGAGTT 286
consensus_15368#1 TGTGCTCCTTGTCGGCCGCCCTGTGCAGCCTGATCGCCTTGTCGCCGATGGCGCCGAGGT 540
consensus_15368#4 AGAAATAAATTCAGCGCGCT--GTTCCTCCTGAAAAAAAAAAAAAAAAAAAAACCAAAAA 325
* * * * *
consensus_15368#0 CGAGC--GCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGTCCGGTGGCCGCCCAGCGCCTG 644
consensus_15368#3 CGAGC--GCGAGCCCGTGGCGGCCGCGCAGGTGGCTGGT--------------------- 395
consensus_15368#2 TTAGCTAGCTAGCTTCTGAC--TCGATCGAGAGA-------------------------- 560
consensus_15368#5 TTAGCTAGCTAGCTTCTGAC--TCGATCGAGAGAATGG---------------------- 322
consensus_15368#1 CGAGCCCGTTG--CTCCGGC---CGCGGAGGTGGCTGGTCCGGTGGCCCCCGAGCGCCTG 595
consensus_15368#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------------- 363
*
consensus_15368#0 GAACGACGGGAACGCGCGGCTGCACGTCTTGCAGACGAAGTCCCCACTCCCGGACGCCGC 704
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 ------------------------------------------------------------
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 GAAGGTCGGGAACGCGCGGCTGCAAGTCTTGCACACGAACTCCCCTTCCCCCGACGTCGC 655
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 CGGCGACGACCCGCGCCGCGGCTTCTTCCGCTCGCCGCTATCCGCGGCAGCGCCGAGCGT 764
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 ------------------------------------------------------------
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 CACCACGCTCCTCCGCCGCGCCCTCTTCCTCCTCGCCGCGCCGCCCGCCGCCGCCGCCGA 715
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 GAGCGACAGCGAGAGGCTGATCACCTCGCCGTCCCTCGGATGCTTGGTCATGGTCAAGAA 824
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 ------------------------------------------------------------
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 CGAGTCCGACGCCGTCGACGAGCAGTCCGTGCTCAGCGCCAGCGCCAGCGACACCTCCTC 775
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 AGAAACCGAACGAACTGGAGATCGATCGAACACAAGATGATCGACGAGACGAGTTTTAGC 884
consensus_15368#3 ------------------------------------------------------------
consensus_15368#2 ------------------------------------------------------------
consensus_15368#5 ------------------------------------------------------------
consensus_15368#1 CTCCTGCCTCGGGTGCTTCATCCCCGATTCGATAAGCTTGTGAATTAATGGATCGATGGA 835
consensus_15368#4 ------------------------------------------------------------
consensus_15368#0 TAGCTAGCTTCTGACTCGATCGAGAGAATGGTTAATATTGCTGT 928
consensus_15368#3 --------------------------------------------
consensus_15368#2 --------------------------------------------
consensus_15368#5 --------------------------------------------
consensus_15368#1 TTGAGAGAGAGATTTTTGGTTGGGGGGAGAT------------- 866
consensus_15368#4 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||