cluster # 15370

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Oryza sativa
cluster # 15370 cluster # 15370 Sequences # 21 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15370#0 length = 892 sequences # 15
consensus_15370#1 length = 621 sequences # 1

consensus_15370#2 length = 429 sequences # 4
consensus_15370#3 length = 93 sequences # 1

consensusID : consensus_15370#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 892
fasta sequence

                              [CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG-GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC-GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC-GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT-GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG---TGAAATGCTTTCTCGATGTAAGACAAGAAAGC---TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK064849             [CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGG       TGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTCTCGATGTAAGACAAGAAAGC   TAGTAGCAAAATCATACTATT                                                                      ]
[+] EMBL AK119599             [ AGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTCTCGATGTAAGACAAGAAAGC   TAGTAGCAAAATCAT                                                                            ]
[+] EMBL AK065690             [   CTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTCTCGATGTAAGACAAGAAAGC   TAGTAGCAAAATCATACTATT                                                                      ]
[+] EMBL AK062091             [    TCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGGCCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTCTCGATGTAAGACAAGAAAGC   TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCT                                            ]
[+] EMBL BP184476             [              AGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCG                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C73857               [                          TCTAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACANGTCGGCGTTCGGCAACAAGNACATCGAGAGCCCGGAGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF325298             [                            TAAACTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAA GAGGAGG GC GGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGACNGCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCG                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS14863A            [                                CTGAAGCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGANGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGNTGGCGAGCGACACGTNGGCGTTCGCCAACACGTACATCGAGAGCCGNGAGACGNCGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CA754054             [                                gttctcCTTAATCTATATATAAGGAGAGTTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGNAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGNCGTCGTCGCACCCGCTGTCNGAGGCG AGGCAATCGAAGCCAGCCCGTAGTGGATGCGATG ACACACACACACACACACAGA                                                                                                                                                                                                                                            ]
[+] EMBL AU065961             [                                                                                              AGTGAATTAGTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGA  CCTGTGAACCCGTTCAGCATCTTTGGGACGACGGTNGCNGCGGACG GTNGCTGGCGAGCGACACGTCGGCGTTCG CAACACGTACATCGAGAGCCGGGANAC GCGNAGG GTACGTGTTCCGGGCGGACCTNCCGGCGGGGGTGAAGATGGANGAGGTGCGGGTCGAGGTGGACGAGGGGAACGTGCTGGTGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS13055A            [                                                                                                       GTGATATCGATCAGAGTGTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGNGTTCGACGCCTG GAACCCGTTCAGCATCTTTGGGACGACGGTGGCGGCGGACGANTNGCTGGCGANCAACACGTCGGCGTTCG CAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTTTTNCGGGCGGACCTGCCGGCGGGGGTNAAGAAGGAGGAGNCGGGGNTNGAGGTGGACGAGGGGAACGTNCTGGTGATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB681826             [                                                                                                                                                                                    GTTCCCCTTCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCGTTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGACCTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTCTCGATGTAAGACAAGAAAGC   TAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCC                                    ]
[-] EMBL BI306548             [                                                                                                                                                                                                                                                                                                                                                                   GTGCTGGTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGCC GAGGCGAAGGCAATCGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACA   A AGTCAGTCAATCCAACGATCCGTACGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATG                                                    ]
[+] EMBL CF196255             [                                                                                                                                                                                                                                                                                                                                                                            ATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGAC GCCGTCGTCGACCTCGTCAGGGCGTNNNNGGACGGCGGCATGCTCACCGT                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU172756             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ttGCCGCCGCCGCACCCGTCCCCGCCGTTGTNGCACCCCCTGTC GAGGCGAAGGCAATNGAAGCCAGCCCGTAGT GATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATNATAAGTTCAAAGTGCTTGCGAGTAAGGNGCNTNCTGNACTTTTGGTTTAATTACCTTTGGTG   TGAAATGCTTTNTCGATGTAANACAANAAAGC   TAGTAGCAAAATCATACTATTTGCTTGATGCAANACATGTTCCATNTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15370#0
CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAG
TTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGT
GTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTGGAACCCG
TTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCG
TTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGAC
CTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAACGTGCTG
GTGATCACCGGCGAGCGCAGCGTCCGGCGGGAGGAGAAGGGCCAGCGGTCGCACCACATC
GAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCTCCCCGACGACGCCGTCGTCGAC
CTCGTCAGGGCGTCCATGGACGGCGGCATGCTCACCGTCACCGTGCCCAAGGTGGTCACT
GACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTC
GAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACACA
GACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGT
GCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTGTGAAATGCTTT
CTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATG
TTCCATCTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15370#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCTTGCCCGCCGGGGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGCTGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCACCACATCGAGCGCAGTGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCCGTCGTCGNCCTCGTCAGGNCGTCCATGGACGGCGGCATGTTNACCGTCACCGTGCCCAAGNTGGTCACTGACCAAGNAGCCGCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTGTGAAATGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCATATGAACATTATCAATCATTCAAAAAAA]

[+] EMBL AU089765             [CCTTGCCCGCCGGGGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGCTGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCACCACATCGAGCGCAGTGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCCGTCGTCGNCCTCGTCAGGNCGTCCATGGACGGCGGCATGTTNACCGTCACCGTGCCCAAGNTGGTCACTGACCAAGNAGCCGCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCGTCGCACCCGCTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTTGGTGTGAAATGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCATATGAACATTATCAATCATTCAAAAAAA]




>consensus_15370#1
CCTTGCCCGCCGGGGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAAC
GTTGCTGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGG
TCGCACCACATCGAGCGCAGTGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGAC
GCCCGTCGTCGNCCTCGTCAGGNCGTCCATGGACGGCGGCATGTTNACCGTCACCGTGCC
CAAGNTGGTCACTGACCAAGNAGCCGCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTC
GTCGCACCCGCTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC
ACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTATACGTTGTCGTCGA
TGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTTT
GGTGTGAAATGCTTTCTCGATGTAAGACAAGAAAGCTAGTAGCAAAATCATACTATTTGC
TTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCATATGAAC
ATTATCAATCATTCAAAAAAA

consensusID : consensus_15370#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 429
fasta sequence

                              [TTCCACCTGCCCCGACGACGCCGTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCAAGGTGGTCTCTTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCC-CCGTCGGTCGCACCCGTCTTCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAA-GTCA-GTCAATCC-ACGATCCGTACGTANTAC-GTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAG-C-AAATCATACTATTTGCTTGATGC-ATACATGTTCCA-TCTTAGTTCCCTCTTCTGAAAAAAAAAA]

[+] EMBL BI807730             [TTCCACCTGCCCCGACGACGCCGTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCAAGGTGGTCTCTTGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCC CCGTCGGTCGCACCCGTCTTCCGAGGCGAAGGCTATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAA GTCA GTCAATCC ACGATCCGTACGTA TAC GTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAG  ACAGAAAGCTAGTAGTAG CAAAATCATACTATTTGCTTGATGC ATACATGTTCCA TCTT                        ]
[+] EMBL BQ908919             [                                                                CACCGTC ACCGTGCCCAAGGTGGTCAC TGACAAGCAGCCCGCCATCGCCGCCGCCGCACCCGTCCCCGCCGTC GTCGCACCCG CTGCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACACAAAGGTCAGGTCAATCC ACGATCCGTACGTANTACGGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAG C AAATCATACTATTTGCTTGATGC ATACATGTTCCA TCTTAGTTCCCTCTTCTGAAAAAAAAAA]
[+] EMBL BI806017             [                                                                                                                                                                    GGC ATCGAAGCCAGCCCGTAGTGATGCGATGAACACACACACACACAC AA GTCA GTCAATCCAACGATCCGTACGTATTAC GTTGTCGTCGATGATAAGTTCCAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGAC CAGAAAGCTAGTAGTAGCC AAATCATACTATTTGCTTGATGC ATACATGTTCCACTCTTAGTT                    ]
[+] EMBL BI808420             [                                                                                                                                                                                                                                                                                           AGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTCTGGTGTGATG AACGCTTTCTCGATGTAAGACA AGAAAGCTAGTAGTAG C AAATCATACTATTTGCTTGATGCAATACATGTCCCC TCTTAGTTCCCTCTTC  AAAAAAA   ]




>consensus_15370#2
TTCCACCTGCCCCGACGACGCCGTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCA
TACTCACCGTCTCCCGTGCCCAAGGTGGTCTCTTGACAAGCAGCCCGCCATCGCCGCCGC
CGCACCCGTCCCCCCGTCGGTCGCACCCGTCTTCCGAGGCGAAGGCAATCGAAGCCAGCC
CGTAGTGATGCGATGAACACACACACACACACAAAGTCAGTCAATCCACGATCCGTACGT
ANTACGTTGTCGTCGATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTT
TGGTTTAATTACCTCTGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGT
AGTAGCAAATCATACTATTTGCTTGATGCATACATGTTCCATCTTAGTTCCCTCTTCTGA
AAAAAAAAA

consensusID : consensus_15370#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 93
fasta sequence

                              [TTTTTTTTTTTTTTTTTCAAAAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCAAATAGTATGATTTTGCTACCCCTTGTCTCGTCCTC]

[+] EMBL CA761072             [TTTTTTTTTTTTTTTTTCAAAAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCAAATAGTATGATTTTGCTACCCCTTGTCTCGTCCTC]




>consensus_15370#3
TTTTTTTTTTTTTTTTTCAAAAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCAAA
TAGTATGATTTTGCTACCCCTTGTCTCGTCCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15370#1      ------------------------------------------------------------
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      CAGCTCGCCATCCAAGCATCAAAGCTTCTAAACTGAAGCTTAATCTATATATAAGGAGAG 60
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ------------------------------------------------------------
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      TTCATTTTGATTTTGGTGAGGAAGAAGTAGTAGAAGTGAATTAGTGATATCGATCAGAGT 120
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ------------------------------------------------------------
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      GTGAAGAAGATGTCTCTGGTGAAGCTGTTTGATACGTTGGCGTTCGACGCCTGGAACCCG 180
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ------------------------------------------------------------
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      TTCAGCATCTTTGGGACGACGGTGGCGGCGGACGCGTGGCTGGCGAGCGACACGTCGGCG 240
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ------------------------------------------------------CCTTGC 6
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      TTCGCCAACACGTACATCGAGAGCCGGGAGACGGCGGAGGCGTACGTGTTCCGGGCGGAC 300
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      CCGCCGG-GGTTGAAAGAAAGGAGGAGTTGCGGTTGGAGTTGGACGAAGGGAAACGTTGC 65
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      CTGCCGGCGGGGGTGAAGAAGGAGGAGGTGCGGGTGGAGGTGGACGAGGGGAAC--GTGC 358
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      TGGTGAATCACCCGGCGAGCGCAGCGTTCCGGCGGGAGGAAGAAAGGGCCAGCGGTCGCA 125
consensus_15370#2      ------------------------------------------------------------
consensus_15370#0      TGGTGATCA--CCGGCGAGCGCAGCGT-CCGGCGGGAGGAG--AAGGGCCAGCGGTCGCA 413
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      CCACATCGAGCGCAG-TGCGCCACCTTCTTCGGCAAGTTCCACTTCCCCCNGAGACGCCC 184
consensus_15370#2      -------------------------------------TTCCACCTGCCCCGACGACGCC- 22
consensus_15370#0      CCACATCGAGCGCAGCTGCGCCACCTTCTTCGGCAGGTTCCACCT-CCCCGACGACGCC- 471
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      GTCGTCGNCCTCGTCAGGNCGTCCATGGACG-GCGGCATGTTNACCGTCACC-GTGCCCA 242
consensus_15370#2      GTCGTCGACCTCTTCAGGGCGTCCATGGACGTGCGGCATACTCACCGTCTCCCGTGCCCA 82
consensus_15370#0      GTCGTCGACCTCGTCAGGGCGTCCATGGACG-GCGGCATGCTCACCGTCACC-GTGCCCA 529
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      AGNTGGTCACTGACCAAGNAGCC-GCCATCGCCCGCCGCCCGCACCCGTCCCCGCCGTCG 301
consensus_15370#2      AGGTGGTCTCTTGACAAGCAGCCCGCCATCGCC-GCCGCC-GCACCCGTCCCCCCGTCGG 140
consensus_15370#0      AGGTGGTCACTGA-CAAGCAGCCCGCCATCGCC-GCCGCC-GCACCCGTCCCCGCCGTCG 586
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      TCGCACCCG-CTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 360
consensus_15370#2      TCGCACCCGTCTTCCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 200
consensus_15370#0      TCGCACCCG-CTGTCGAGGCGAAGGCAATCGAAGCCAGCCCGTAGTGATGCGATGAACAC 645
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTAT-ACGTTGTCGTCG 419
consensus_15370#2      ACACACACACACA----AAGTCAGTCAATCCA-CGATCCGTACGTANTACGTTGTCGTCG 255
consensus_15370#0      ACACACACACACACAGACAGTCAGTCAATCCAACGATCCGTATGTAT-ACGTTGTCGTCG 704
consensus_15370#3      ------------------------------------------------------------
                                                                                   

consensus_15370#1      ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTT 479
consensus_15370#2      ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTGCTTTTGGTTTAATTACCTC 315
consensus_15370#0      ATGATAAGTTCAAAGTGCTTGCGAGTAAGGTGCTTGCTGTACTTTTGGTTTAATTACCTT 764
consensus_15370#3      ------------------------------------------------TTTTTTTTTTTT 12
                                                                       ***  **   * 

consensus_15370#1      TGGTGTGA---AATGCTTTCTCGATGTAAGACA-AGAAAGCTAGTAGCA--AAATCATAC 533
consensus_15370#2      TGGTGTGATGAAACGCTTTCTCGATGTAAGACACAGAAAGCTAGTAGTAGCAAATCATAC 375
consensus_15370#0      TGGTGTGA---AATGCTTTCTCGATGTAAGACA-AGAAAGCTAGTAGCA--AAATCATAC 818
consensus_15370#3      TTTTTCAA---AAAAGGGAACTAAAATGGAACATGTATTGCATCAAGCA---AATAGTAT 66
                       *  *   *   **          *  *   ***   *  **    ** *   ***  ** 

consensus_15370#1      TATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTACGTATTTTGTGTGTTCCCA 593
consensus_15370#2      TATTTGCTTGATGCA-TACATGTTCCATCTTAGTTCCCTCTTCTGAAAAAAAAAA----- 429
consensus_15370#0      TATTTGCTTGATGCAATACATGTTCCATCTTAGTTCCCTTAAAAAAAAAAAAAAAAAAAA 878
consensus_15370#3      GATT---TTGCTAC--CCCTTGTCTCGTCCTC---------------------------- 93
                        ***   *** * *    * ***  * ** *                             

consensus_15370#1      TATGAACATTATCAATCATTCAAAAAAA 621
consensus_15370#2      ----------------------------
consensus_15370#0      AAAAAAAAAAAAAA-------------- 892
consensus_15370#3      ----------------------------