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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 947 fasta sequence
[TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAAC-TTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGAGCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCTTTCTACTCCTTCAGTCCGTG]
[+] EMBL CF310661 [TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAAC TTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAAT ]
[-] EMBL CF281866 [ TATTTCCTGAAGAACGAACTTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGAGCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCTTTCTACTCCTTCAGTCCGTG]
consensusID : consensus_15374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 903 fasta sequence
[TTTTTTTTTTTTTTTTTT--TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG-GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC--TTCCTAAAA-CCTGG-AACTGGC-GGTGCATCACG-AGCC-AAGC-TTGTC-AAGGCTTC-ATC-AAACA-CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG---------CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT-CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCTCAGTCCATG]
[-] EMBL AU162961 [TTTTTTTTTTTTTTTTTTGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGNTCACCTTCAGGTTTTCCT ]
[+] EMBL CF335278 [ TTTTTTTTTTTTTGA TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCT ]
[+] EMBL CF337119 [ TTTTTTTTTTTAAA TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC ]
[+] EMBL CF337390 [ TTTT TTTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGNGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCC ]
[+] EMBL CA759754 [ TT TTTTTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGCCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAAAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGACGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGCATTTCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGA ]
[+] EMBL CB679295 [ ggCACTTGCAACCTGCATATCAACTGCAATGCCTTATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGA ]
[-] EMBL AK067623 [ CTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCCTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGA ]
[-] EMBL AK104876 [ TTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGCGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACAC TGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCT ]
[+] EMBL CF281867 [ ttttTCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACAGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATNTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGA ]
[-] EMBL CB679294 [ GGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTGTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG ATCTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTGGCGTGACACAACGGATGTCTTGGCGTTTTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCAT ]
[-] EMBL CF335277 [ TTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTC ]
[-] EMBL CF317933 [ CAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCCCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCTCAGTCCATG]
[-] EMBL CF310619 [ CAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGG ]
[-] EMBL CF299812 [ TGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT ATGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTTTGTCCTCTTCTCAGCTC GGAAAA A TTTCTACTC ]
[-] EMBL CF310660 [ GATGCTGAGTATTTCATGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTT ]
[-] EMBL CF317661 [ CTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGgagcc ]
[-] EMBL OSC9991 [ TTCNCCCTCCTTTGGACCNTCCCTAAAACCCTGGAAACTGGCGGGTGCATCACGAAGCCAAAGCTTTGTCAAAGGCTTCAATCAAAACACCCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACNTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCC NTGACGCCATGGATGCGGCTTGC ]
[-] EMBL CB096215 [ AGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCACCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAG ]
consensusID : consensus_15374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence
[TTTTTTTTTTTTTTTTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTATATTTGATGTTCTCCCCTTCAACATCCAACAGATTTCCATGAAGGAACAGGAAAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTGCGGTAAACGGACCCGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCGGGCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCGCTTG]
[+] EMBL CA759755 [TTTTTTTTTTTTTTTTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTATATTTGATGTTCTCCCCTTCAACATCCAACAGATTTCCATGAAGGAACAGGAAAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTGCGGTAAACGGACCCGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCGGGCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCGCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15374#0 TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAA 60
consensus_15374#1 ---------------------------------------------------TTTTTTTTT 9
consensus_15374#2 -------------------------------------TTTTTTTTTTTTTTTTACACAAA 23
*
consensus_15374#0 TCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 120
consensus_15374#1 TTTTTTTTTTGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 69
consensus_15374#2 TCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 83
* * * ***************************************************
consensus_15374#0 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 180
consensus_15374#1 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 129
consensus_15374#2 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 143
************************************************************
consensus_15374#0 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGT 240
consensus_15374#1 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGT 189
consensus_15374#2 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGT 203
************************************** *********************
consensus_15374#0 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 300
consensus_15374#1 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 249
consensus_15374#2 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 263
************************************************************
consensus_15374#0 ATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 360
consensus_15374#1 ATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 309
consensus_15374#2 ATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 323
***************** ******************************************
consensus_15374#0 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 420
consensus_15374#1 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 369
consensus_15374#2 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 383
************************************************************
consensus_15374#0 GAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTA 480
consensus_15374#1 GAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTA 429
consensus_15374#2 GAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTA 443
*** ***************************************** **************
consensus_15374#0 TATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGA 540
consensus_15374#1 TATTTGATGTTCTCCCTCCTTTGGACTTCCT-AAAACCTGGAACTGGCGGTGCATCACGA 488
consensus_15374#2 TATTTGATGTTCTCCC---CTTCAACATCCAACAGATTTCCA-----TGAAGGAACAGGA 495
**************** ** ** *** * * * * * * * ** **
consensus_15374#0 GCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTT-TCCAGGCAAATCCAC 599
consensus_15374#1 GCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTT-TCCAGGCAAATCCAC 547
consensus_15374#2 AAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTG 555
** * ** * **** * * * * * * * ** ** ** * * **
consensus_15374#0 TCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCG 659
consensus_15374#1 TCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGAT-GTCTTGGCGTTCTGCAGCG 606
consensus_15374#2 CGGTAAACGGACC---CGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCG 612
** * ** * * **** * * * ** * * **** **
consensus_15374#0 ACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCG 719
consensus_15374#1 ACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCG 666
consensus_15374#2 G-GCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCG 671
* ** * * *** * *** ** *** *** ** ***
consensus_15374#0 ACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCT 779
consensus_15374#1 ACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCT 726
consensus_15374#2 CTTG-------------------------------------------------------- 675
consensus_15374#0 GACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGT 839
consensus_15374#1 GACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGT 786
consensus_15374#2 ------------------------------------------------------------
consensus_15374#0 GGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATG 899
consensus_15374#1 GGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATG 846
consensus_15374#2 ------------------------------------------------------------
consensus_15374#0 CGGCTTGCTCTGTCCTCTTCTCAGCTC----------TTTCTACTCCTTCAGTCCGTG 947
consensus_15374#1 CGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCT-CAGTCCATG 903
consensus_15374#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||