cluster # 15381

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Oryza sativa
cluster # 15381 cluster # 15381 Sequences # 21 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15381#0 length = 901 sequences # 17
consensus_15381#1 length = 481 sequences # 2

consensus_15381#2 length = 276 sequences # 1
consensus_15381#3 length = 91 sequences # 1

consensusID : consensus_15381#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 901
fasta sequence

                              [CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG-CAGC-GGGCGG-CATGGGTT--CGTGG-TGGCGATCA-CGGGGGTGGAGGATGT-CGGC-AAGGGGCT-CATCA-GGGAGGG-CAC-GGGCTACGTCACCTT-CCCGGTCAAGTA-CCAGTGCGTCGTC-TTCCGCCCCTT-CAAGGGCGAGATCCTGGAGGCCGTCGTCA-CCATGGTCAACAAGAT-GGGGTTCTTCGCGGA-GGC-TGGGCCTGTGCAGATCTTCGTGTCCAACCA-TTTGATTCCTGATGATATGGAGTTCCAAT-CTGGGGATGTGCCA-AATTATACTACTTCTGATGGATCGGTGAAAATTCAG-AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG-TTGATGCAAC-AGAAA--TTTTTTGCATTGGCACAAT-AAAAGATGACTTCC--TGGGCG-TTAT-C-AG-TGAT-CCTGGTGCGGCAGTGT-AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG-TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAAGCACTGTATCCTTGCAATTAAACATT]

[+] EMBL CF277760             [CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGANA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAt                                                                                                                                                                                                     ]
[+] EMBL AK072739             [                            TGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAATTTTGCACTGTATCCTTGCAATTAAACATT]
[+] EMBL CF296716             [                            TGAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGG                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK103913             [                             GAGTCGAACTGTTGAGGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGCCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCGAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTCTCAAGCAGTCATTTAACTAATCAAGCTC                                                     ]
[-] EMBL CB669758             [                                            GGAATCGCTCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGAC                                                 ]
[+] EMBL OSS2823A             [                                              AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCANCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGATGGGGGTTCTTCGCGGAGGGCTTGGGCCTtt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSS3407A             [                                              AATCGCTCGCTCGCTCGCTCGCTCGCCGGC GNGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGN CATGGGTT  CGTGG TGGCGATCA CGNGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGNCCCTT CAAGGGCGAGATCCTGGAGGNCGTCGTCA CCATGGTCAACAAGAT AGGGTTCTTCGCGAA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS2782A             [                                              AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTCTTTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA ACATGGTCAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU066105             [                                              AATCGCTCGCTCGCTCGCTCGCTCGCCGGCGG GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AANGGGCT CATCA NGGAGGG CAC GGGCTACGTTACCTT CCCGGTCAAGTA CCAGTGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CB669757             [                                                    TCGCTCGCTCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTCTCCAAGCTCATCAAGGACGTCGAGGGCACCTG CAGC GGGCGG CATGGGTT  CGTGG TGGCGATCA CGGGGGTGGAGGATGT CGGC AAGGGGCT CATCA GGGAGGG CAC GGGCTACGTCACCTT CCCGGTCAAGTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTTCACTTTCAAGCAGTCA                                                                      ]
[+] EMBL AU086049             [                                                                                                                                                                                                               ACCTGCCACCGGGGCGGNCATGGGTTTCCNTGGTTGGCGATCACCGGGGTTGGAGGATGTCCGGCAAAGGGGCTCCATCAGGGGAGGGCCACGGGGCTACTTCACCTTCCCCGGTCAAGTACCCAGTGCGTCGTC TTCCGCCCCTTCCAAGGGCGAGATCCTGGAGNCCGTCGTCACCCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGCCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAATCCTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAGAAAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCaaaaaaa                                         ]
[+] EMBL BI809810             [                                                                                                                                                                                                                                                                                                                                   AAGTA CCAGTGCGTCGTC TTCCG CCCTT CAAGGGCGAGATCCTGGA GCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA  GC TGGGCCTGTCCAGATCTTCGTGTCCAACCACTTTGATTCCGGATGATATGGAGTTCCAAT CTGGGGATGTGCCACAATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTGTTTGATGCAACAAGAAATTTTTTTTGCATTGGCACAATAAAAAGATGACTTCC  TGGGCG TTAT CAAG TGAT CCTGGTGCCGCAGTGTAAAATTATCCGGTGACAAGATTACGTCTCTTCATGCTCTTGAACGGGAATATTCTGATGAATTGTAGTGTTAAAATATGGAATCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGACGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTTGTGGGATTCAACTTTCAAGCAGTCATTTAACCAATCAAACTCTGACCTTTTTACGGACTGTAAAAAAA                           ]
[-] EMBL CF277759             [                                                                                                                                                                                                                                                                                                                                     GTA CCAGTGCGTCGTC TTCCGCCCCTT CAAGGGCGAGATCCTGGAGGCCGTCGTCA CCATGGTCAACAAGAT GGGGTTCTTCGCGGA GGC TGGGCCTGTGCAGATCTTCGTGTCCAACCA TTTGATTCCTGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAaaaaaa                                                                                                                   ]
[+] EMBL AU174372             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGATGATATGGAGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAA                          ]
[-] EMBL CF296717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTTCCAAT CTGGGGATGTGCCA AATTATACTACTTCTGATGGATCGGTGAAAATTCAG AAAGATAGTGAGGTTCGGTTGAAGATTATTGGGACACGTG TTGATGCAAC AGAAA  TTTTTTGCATTGGCACAAT AAAAGATGACTTCC  TGGGCG TTAT C AG TGAT CCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACaaaaaa                               ]
[+] EMBL AU174424             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccnCGGG TT AAGCACC A AAA  TTTTTTGCATTGGCCCAAT AAAAGATG CTTNC  TGGGGG TTAT C AG TGAT CCTGGTGCGNCAGTGT AAATTATCCGGTGACAAGATTACGCCTTTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAA                          ]
[+] EMBL AU097206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             cntTTCCNTTGGGCGTTTATCC AGTTGATCCCTGGTGCGGCAGTGT AAATTATCCGGTGACAAGATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTG TTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCaaaaa                                           ]




>consensus_15381#0
CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGC
TCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTG
GAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTC
TCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCG
ATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACC
TTCCCGGTCAAGTACCAGTGCGTCGTCTTCCGCCCCTTCAAGGGCGAGATCCTGGAGGCC
GTCGTCACCATGGTCAACAAGATGGGGTTCTTCGCGGAGGCTGGGCCTGTGCAGATCTTC
GTGTCCAACCATTTGATTCCTGATGATATGGAGTTCCAATCTGGGGATGTGCCAAATTAT
ACTACTTCTGATGGATCGGTGAAAATTCAGAAAGATAGTGAGGTTCGGTTGAAGATTATT
GGGACACGTGTTGATGCAACAGAAATTTTTTGCATTGGCACAATAAAAGATGACTTCCTG
GGCGTTATCAGTGATCCTGGTGCGGCAGTGTAAATTATCCGGTGACAAGATTACGCCTCT
TCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACT
GGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCA
AGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAA
TCAAACTCTGACCTTTTTACGGACTGTACAAAAAAGCACTGTATCCTTGCAATTAAACAT
T

consensusID : consensus_15381#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 481
fasta sequence

                              [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGGCCGTCGTCAACA-TGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGATCTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATTTNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG]

[+] EMBL AU066343             [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGGCCGTCGTCAACA TGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGATCTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATTTNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG]
[+] EMBL AU066236             [TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACCTTCCCGGTCAAGTACCAGTGCGTCGTC TTCCGCCCCTTCAAGGGCGAGATNC TGGAGGCCGTCGTCAACATTGGTCAACAAGATNGGGTTTTTC                                                                                                                                           ]




>consensus_15381#1
TCGCTCGCTCGCTCGCTCGCCGGCGGGCGGACGAGGAGGGGGCGAGATGTTCTTCCACAT
CGTGCTGGAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAA
GCTCGTNTCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGT
GGTGGCGATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTA
CGTCACCTTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNC
TTGGAGGCCGTCGTCAACATGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTT
TCAAGATCTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTT
GGGGATTTNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAA
G

consensusID : consensus_15381#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA]

[+] EMBL CF315408             [AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA]




>consensus_15381#2
AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAGGGGCTGTAAGTG
GGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTGGCACTGTTGCTT
GAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAACTCTGACCTTTT
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA

consensusID : consensus_15381#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence

                              [AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGTCCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA]

[+] EMBL CA766519             [AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGTCCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA]




>consensus_15381#3
AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGTCCGTAAAAAGGTC
AGAGTTTGATTGGTTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      CATGACTGAAGGAGTAGAAAAAGCCAGTTGAGTCGAACTGTTGAGGAATCGCTCGCTCGC 60
consensus_15381#1      ----------------------------------------------------TCGCTCGC 8
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      TCGCTCGCTCGCCGGCGGCGCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTG 120
consensus_15381#1      TCGCTCGCTCGCCGGCGG-GCGGACGAGGAGGGGGCGAGATGTTCTTCCACATCGTGCTG 67
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      GAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCGACAAGCTCGTC 180
consensus_15381#1      GAGCGGAACATGCAGCTGCACCCGCGGCACTTCGGCCCGCACCTCCGCNACAAGCTCGTN 127
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      TCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCG 240
consensus_15381#1      TCCAAGCTCATCAAGGACGTCGAGGGCACCTGCAGCGGGCGGCATGGGTTCGTGGTGGCG 187
                                                                                   

consensus_15381#2      ------------AATATTCCGATGAATTGTAGTGTTAAAATATGGAAGCCCCACTGGAAG 48
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      ATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACC 300
consensus_15381#1      ATCACGGGGGTGGAGGATGTCGGCAAGGGGCTCATCAGGGAGGGCACGGGCTACGTCACC 247
                                                                                   

consensus_15381#2      GGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAATGGCGCTTTACCAAGTTG 108
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      TTCCCGGTCAAGTACCAGTGCGTCGTCTT-CCGCCCCTTCAAGGGCGAGATCCT-GGAGG 358
consensus_15381#1      TTCCCGGTCAAGTACCAGTNCGTCGTCTTTCCGCCCCTTCAAGGGCGAGATNCTTGGAGG 307
                                                                                   

consensus_15381#2      GCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAGTCATTTAACTAATCAAA 168
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      CCGTCGTCACCATGGTCAACAAGATGGGGTTCTTCGCGGAGGCT-GGGCCTGTGCA-GAT 416
consensus_15381#1      CCGTCGTCAACATGGTCAACAAGATGGGGTTCTTCGCGGAGGCTTGGGCCTTTTCAAGAT 367
                                                                                   

consensus_15381#2      CTCTGACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 228
consensus_15381#3      -------------AGAGGACGAGACAAGGGGTGCAAGGATACAGTGCAAAATTGTACAGT 47
consensus_15381#0      CTTC--GTGTCCAACCATTTGA--TTCCTGA-TGATATGGAG-TTCCAATCT-GGGGATG 469
consensus_15381#1      CTTTCGGTGTCCAACCATTTTNATTTCCTGAATGATATTGAGGTTCCAATNTTGGGGATT 427
                                    *                    *     *      **        *  

consensus_15381#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAA------------ 276
consensus_15381#3      CCGTAAAAAGGTCAGAGTTTGATTGGTTAAAAAAAAAAAAAAAA---------------- 91
consensus_15381#0      TGCCAAATTATACTACTTCTGA-TGGATCGGTGAAAATTCAGAAAGATAGTGAGGTTCGG 528
consensus_15381#1      TNCCAAATATTAATAATTTTNAATGGTTCGGNGAAATTTCAGAAAGTTNGTAAG------ 481
                           ***              *           ***    * **                

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      TTGAAGATTATTGGGACACGTGTTGATGCAACAGAAATTTTTTGCATTGGCACAATAAAA 588
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      GATGACTTCCTGGGCGTTATCAGTGATCCTGGTGCGGCAGTGTAAATTATCCGGTGACAA 648
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      GATTACGCCTCTTCATGCTCTTGAACGGGAATATTCCGATGAATTGTAGTGTTAAAATAT 708
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      GGAAGCCCCACTGGAAGGGGCTGTAAGTGGGTTGGAACCTGTATTTTCATCACTATAAAT 768
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      GGCGCTTTACCAAGTTGGCACTGTTGCTTGAGTGTGTTGTGGGATTCAACTTTCAAGCAG 828
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      ------------------------------------------------------------
consensus_15381#3      ------------------------------------------------------------
consensus_15381#0      TCATTTAACTAATCAAACTCTGACCTTTTTACGGACTGTACAAAAAAGCACTGTATCCTT 888
consensus_15381#1      ------------------------------------------------------------
                                                                                   

consensus_15381#2      -------------
consensus_15381#3      -------------
consensus_15381#0      GCAATTAAACATT 901
consensus_15381#1      -------------