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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1291 fasta sequence
[TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA------GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG-TGACAAGTGTCAAGCTGCC-TGACTACAATTC-TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC-TGTGGTTGAATTTT-CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG-TGCAGAAGCTGGG-TTTGACACTGCTACAGGAAAATTTACCAAG-TACAGTGC-TGCG-ATAGG-TGTAACCAAGCCAGATTATCATGCTGCAATCGTT-CTGGCGGACAAAGGTGACA-CC-GTTAAAGTGTCAGGTG-TATATCA-CC-TTGATG-ATAAGCAGAAAT-CCTCTG-TT-GTTGC-TGA-ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT-CAC-TG-TTGGTGGCCTG-TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT-CTGGTGAATTCGACA-CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT-GGTT-GATGGCTGTTAAATTTCGAATTCTTTGGTT-GTTTTGCAAAGCAAT-GGCCAATAA-TTTGTTCCGCA-G-ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK121020 [TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCAC ]
[+] EMBL AU173384 [ CCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGGGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACT ]
[+] EMBL AF074806 [ TCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTTGACAAGTGTCAAGCTGCCTTGACTACAATTCTTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTTGTGGTTGAATTTTCCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTTGCAGAA CTGGGTTTTGAAACTGCTACAGGAAAATTTACCAAGTTACAGTGCTTGCGAATAGGTTTTTACCAACCCAGATTATCATGCTGCAATCNTTCCTGGCGGA AAAAGTGACACCC GTTAAATTTTCNGGTGTTTTATCA CCTTTGATGAATAANCA AAAT CCTCTGTTT GTTGCTTGA ATTAACCC CAGG TCTCCACAAATGAAAACACTCT CCCTTGTTTGGTNGCCTGTTACAA ]
[+] EMBL AU062398 [ TCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACANGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTT ]
[+] EMBL AY224468 [ AAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACT ]
[+] EMBL CA999978 [ CTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGCGTTTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGAGACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CCGGTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCA ]
[+] EMBL CA998440 [ TGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCT ]
[+] EMBL D43177 [ ATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCCTGGTGAATTCGGCACCCAAGGCCTTGGNCAGACCCCCCA ]
[+] EMBL AA749597 [ AGGTGACA CC GTTAAAGTGTCAGGTG TATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCAT ]
[+] EMBL AU082590 [ GTGACA CC GTTAAAGTGNCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACANTCT CAC TG TTGGTGNCCTG TACAAGNTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGNTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGNCCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCACAAAAAAAA ]
[+] EMBL C27072 [ GACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTNAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGGTTGGATGGCTGTTAAATTTCGGATTCTTTGGTTGGTTTTGCAAAGCAATGGGCCAATAATTTTGTTCCGCAGG ACCTGTTACTTCAATCTT ]
[+] EMBL BI797880 [ TAAAGTGTCAGGTG TATATCATCC TTGATG ATAAGCAGAAATGCCTCTG TTGGTTGC TGATATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTGCAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCC ATAA TTTGTTCCGCA G ACCTGTTACTTCAAaaaaaaaa ]
[+] EMBL C73766 [ GTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTNCAGCATGAGGTTAAACCCAAGTCGGNTTTNACAATCT CTNGTCAATTCGACA CCAAGGCCTTG ]
[+] EMBL OS0038A [ CTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTTAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCA ]
[+] EMBL AU173385 [ CAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTNTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCAAAAAAAAA ]
[+] EMBL AU164172 [ TCTGT GGTT GNTGGCTGTTAAA TTCGAA TCTTTGGTT GTTTTGC AAGC AT GGCCNATAA TTTGTTCCGCA GAACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCNATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTNAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCNCCNGTAGTNTNTATTGATATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence
[GCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTGACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTGCTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTGACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTGCTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCAGCATGANGTTAACCAAGTTCGGTTTTGAAATCTCTGGTGAATTCGACACAAGGCCTTGGAAACCCCCAAATTTTGGCTAGCGCTTGACTCAGCCCTGAAATCGCTGGGGGGTTGAGGGTTGTAAATTCCAATTTTTGGGGTTGTTTTCAAACCATGGCCAATATTTTTATCCAAGACTGTACTTTAATTTTTAAAAGTTTGGCGATCTGGGGCCGGAGCACCGGGCGACGCCGTCGTGATAT]
[+] EMBL CA758220 [GCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTGACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTGCTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTGACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTGCTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCAGCATGANGTTAACCAAGTTCGGTTTTGAAATCTCTGGTGAATTCGACACAAGGCCTTGGAAACCCCCAAATTTTGGCTAGCGCTTGACTCAGCCCTGAAATCGCTGGGGGGTTGAGGGTTGTAAATTCCAATTTTTGGGGTTGTTTTCAAACCATGGCCAATATTTTTATCCAAGACTGTACTTTAATTTTTAAAAGTTTGGCGATCTGGGGCCGGAGCACCGGGCGACGCCGTCGTGATAT]
consensusID : consensus_15384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCTCACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGANTGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTNCAANANTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGCTGCCTGACTACAATTCTGGAAAGGTGGANATGCNATACTTCCNTGAAAATGCAAGTTTTGCCNCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAACANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTTCTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAAAAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNGTGGCCGTTNAAGT]
[+] EMBL AF074772 [GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCTCACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGANTGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTNCAANANTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGCTGCCTGACTACAATTCTGGAAAGGTGGANATGCNATACTTCCNTGAAAATGCAAGTTTTGCCNCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAACANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTTCTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAAAAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNGTGGCCGTTNAAGT]
consensusID : consensus_15384#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[CTGTTGTTGCTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACACCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAAAAAAAAAAAAAAA]
[+] EMBL C97870 [CTGTTGTTGCTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACACCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAAAAAAAAAAAAAAA]
[-] EMBL BI306258 [ CCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGG ]
consensusID : consensus_15384#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[ACTCTCGTCGATGTCAAAGTGGACACAGAANCTAANANCTCTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANCTGCCTGACTACAANTCTGGAAAGGTGGAGATGCAANACTTCCATGAGAATGCAANTTTTGCCACTGCTGTTAAANTTCGAANTCTTTGGTTGTTTTGCAAANCAATGGCCAANAANTTGTTCCGCANACCTGTTACTTCAANCTTTTAAANTTTTGCTGCTCTGTGGGCAGGAGCCAAAAAA]
[+] EMBL AU068701 [ACTCTCGTCGATGTCAAAGTGGACACAGAANCTAANANCTCTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANCTGCCTGACTACAANTCTGGAAAGGTGGAGATGCAANACTTCCATGAGAATGCAANTTTTGCCACTGCTGTTAAANTTCGAANTCTTTGGTTGTTTTGCAAANCAATGGCCAANAANTTGTTCCGCANACCTGTTACTTCAANCTTTTAAANTTTTGCTGCTCTGTGGGCAGGAGCCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15384#0 TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCT 60
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCA 120
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 TGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCA 180
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGG 240
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 GCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTT 300
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 -------------------------------GCTTTATACTCTTGATGTCAGCTCAGTTT 29
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 ACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTA 360
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTA 89
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTG 420
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 CTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTG 149
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 ACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTG 480
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 ACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTG 209
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGAC 540
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 CTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGAC 269
consensus_15384#2 ------------------------------------------------------------
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 TTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTG 600
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 TTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTG 329
consensus_15384#2 --------------GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGC 46
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTG 660
consensus_15384#3 ------------------------------------------------------------
consensus_15384#1 CTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTG 389
consensus_15384#2 CATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCT 106
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 ACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTG 720
consensus_15384#3 ---------------------------------------------------CTGTTGTTG 9
consensus_15384#1 ACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTG 449
consensus_15384#2 CACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAN 166
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 CTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTT-GGTGGCCTGTAC 779
consensus_15384#3 CTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTT-GGTGGCCTGTAC 68
consensus_15384#1 CTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTAC 509
consensus_15384#2 TGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTT-GATGTCAGCTCA 225
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 AAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 839
consensus_15384#3 AAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 128
consensus_15384#1 AAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 569
consensus_15384#2 GTTTACAAGTNCAANANTACTCTC--GTCGATGTCAAAGTGGACACAGAATCTAATATCT 283
consensus_15384#4 ------------------ACTCTC--GTCGATGTCAAAGTGGACACAGAANCTAANANCT 40
** * * * * * ** ** ** ** **
consensus_15384#0 CTTCT-CCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACAC 898
consensus_15384#3 CTTCT-CCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACAC 187
consensus_15384#1 CTTCT-C-AGCATGANGTTAA-CCAAGTTCGGTTTTGA-AATCTCTGGTGAATTCGACAC 625
consensus_15384#2 CTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGC 343
consensus_15384#4 CTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANC 100
** ** * * *** ** * * * * ** * * *
consensus_15384#0 CAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACA 958
consensus_15384#3 CAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACA 247
consensus_15384#1 -AAGGCCTTGGAAA---CCCCCAAATTTTGGCTAGCGCTTG-ACTCAG-CCCTGAAATCG 679
consensus_15384#2 ---TGCCTGACTACAATTCTGGAAAGGTGGANATGCNAT---ACTT---CCNTGAAAATG 394
consensus_15384#4 ---TGCCTGACTACAANTCTGGAAAGGTGGAGATGCAAN---ACTT---CCATGAGAATG 151
**** * ** * * ** *** ** *** *
consensus_15384#0 TCGTCTGTGGTTGATGGCTGTTAAATT----TCGAATTCTTTGGTTG--TTTTGCAAAGC 1012
consensus_15384#3 TCGTCTGTGGTTGATGGCTGTTAAATT----TCGAATTCTTTGGTTG--TTTTGCAAAGC 301
consensus_15384#1 CTGG--GGGGTTGAGGGTTGT-AAATT----CCAATTTTTGGGGTTG--TTTTC--AAAC 728
consensus_15384#2 CAAGTTTTGCC--NCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAAC 452
consensus_15384#4 CAANTTTTGCC--ACTGCTGTTAAANT----TCGAANTCTTTGGTTG--TTTTGCAAANC 203
* * *** * * * ***** **** * *
consensus_15384#0 AA----TGGCCAATAATTTGTTCC----GCAGACCTGTTACTTCAATCTTTTA----AAG 1060
consensus_15384#3 AA----TGGCCAATAATTTGTTCC----GCAGACCTGTTACTTCAATCTTTTA----AAG 349
consensus_15384#1 CA----TGGCCAATATTTTTATC------CAAGACTGT-ACTTTAATTTTTAA----AAG 773
consensus_15384#2 ANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGG-GTTTGACACTGCTACAGGAAA 511
consensus_15384#4 AA----TGGCCAANAANTTGTTCC----GCANACCTGTTACTTCAANCTTTTA----AAN 251
** *** ** ** *** ** * * * **
consensus_15384#0 TTTTGCT--GCTCTGTG----GGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCT 1114
consensus_15384#3 TTTTGCT--GCTCTGTG----GGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCT 403
consensus_15384#1 TTTGGC---GATCTG-G----GGCCGGAGC-ACCGGGCGACGC-CGTCGTGATAT----- 818
consensus_15384#2 ATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTT 571
consensus_15384#4 TTTTGCT--GCTCTGTG----GGCAGGAGCCAAAAAA----------------------- 282
** * * * * * * * * *
consensus_15384#0 ACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTT 1174
consensus_15384#3 ACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAA 463
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 -CTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAA 630
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 AGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGA 1234
consensus_15384#3 AAAAAAAAAAAAA----------------------------------------------- 476
consensus_15384#1 ------------------------------------------------------------
consensus_15384#2 AAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNG 690
consensus_15384#4 ------------------------------------------------------------
consensus_15384#0 TATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1291
consensus_15384#3 ---------------------------------------------------------
consensus_15384#1 ---------------------------------------------------------
consensus_15384#2 TGGCCGTTNAAGT-------------------------------------------- 703
consensus_15384#4 ---------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||