These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1289 fasta sequence [TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT-GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT-CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC-TCCCTG-CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC-AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT-ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA-CCTCCACTTTA-TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071410 [TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGGATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTG ] [+] EMBL CB671877 [ GATCCGCTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGC ] [+] EMBL CB654857 [ CTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCCTGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGATGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCTATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTGTGAGCATGTTTCCCAGATTCCATC AAAGac ] [+] EMBL CF304228 [ GAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT AT ] [+] EMBL C99560 [ ACGTCATCGTCGAGTGGAACGTNGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACNCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTGCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACNACCCTGNCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCAT ] [-] EMBL AU075571 [ CGTCATCGTCGAGTGGAACGN GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATA CTGATGGCTAAAGAAGTTCTCAACAAGTTNCCc ] [+] EMBL AU070592 [ CGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATNGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGNTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTNTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCC ] [+] EMBL CF322797 [ CGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAAC ] [-] EMBL CB671878 [ CACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAAT ] [-] EMBL CB654858 [ GTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGGGCATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGT TTTCATGCGTTTTTTAATAGATGACGCTTGACTTTTTCTCACTAAAAgga ] [+] EMBL CF309610 [ CTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGC AAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGA ] [-] EMBL CF309609 [ TGAGCATGTTTCCCAGATTCCATCAAAAGTCATTCTGCTTCACACAAAAGGATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACTAATACTTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGC AAGGATGCCGAACCCTCCACTTTANTCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAAA ] [+] EMBL CF311309 [ AGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGACGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGT ] [-] EMBL CF311310 [ AA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGACGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGCACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTT ] [+] EMBL AU081589 [ CCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAA ] [+] EMBL C99559 [ CGATGNACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTNACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCNCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU081611 [ AAAGTTNTAAAAGCAATCAATGGTNCTGGGGAAGCTCNCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTNTGTNACAATCNCATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTNCATGGCCAGCTATAGTTACNCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTNAAATNTNCAACCTCCGTTTTTTAATAGATGACNCTTGACTTTTTNTCAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_15404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence [CACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT-GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAAAGACAGTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAAGTGCTACTACGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGCTGAAGTGTCAGAAAAGCAAAATAATTTAACTAGTTAACTTCTGATGAAGTATAAACGAAGGAAATATAAATTTTAACAAAACCAGACTGCTTTTTGTCATACATATATGCTCAATTTGTACTAGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGAGAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAAGGCTAAAGGTTATAAATTTTCT] [+] EMBL AK065779 [CACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAAAGACAGTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAAGTGCTACTACGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGCTGAAGTGTCAGAAAAGCAAAATAATTTAACTAGTTAACTTCTGATGAAGTATAAACGAAGGAAATATAAATTTTAACAAAACCAGACTGCTTTTTGTCATACATATATGCTCAATTTGTACTAGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGAGAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAAGGCTAAAGGTTATAAATTTTCT] [+] EMBL AU081590 [ CGTCATCGTCGAGTGGAACGTAGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCT ] [+] EMBL CA763136 [ ATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTACCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAG ] consensusID : consensus_15404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence [CAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCGGTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATCAAAGTCATT] [+] EMBL CB676723 [CAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCGGTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATCAAAGTCATT] consensusID : consensus_15404#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [GNCCTGCCGCCCGATGACCACACGGGACCATTGAAGCNACAGTGAGCCGCCCCAAGTCAAAGTTGTNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGAACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCNGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAACATGTGAGAAAAAGTNAACGGCGTNATATATTTAAAAACGGAGGGAGTACCCACTTGNACATTTGAAGGCTNAAGGTTATAAAATTTCTTCTCCTTTGTACTTNAAAAAAAACACAACCANACGCTANGN] [-] EMBL C26378 [GNCCTGCCGCCCGATGACCACACGGGACCATTGAAGCNACAGTGAGCCGCCCCAAGTCAAAGTTGTNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGAACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCNGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAACATGTGAGAAAAAGTNAACGGCGTNATATATTTAAAAACGGAGGGAGTACCCACTTGNACATTTGAAGGCTNAAGGTTATAAAATTTCTTCTCCTTTGTACTTNAAAAAAAACACAACCANACGCTANGN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15404#1 ------------------------------------------CACTCGCACAGATCGGAT 18 consensus_15404#2 --------------------------------------------------CAGATCGGAT 10 consensus_15404#0 TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGAT 60 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 78 consensus_15404#2 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 70 consensus_15404#0 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 120 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 138 consensus_15404#2 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 130 consensus_15404#0 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 180 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 198 consensus_15404#2 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 190 consensus_15404#0 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 240 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 258 consensus_15404#2 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 250 consensus_15404#0 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 300 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 CACCGT------------------------------------------------------ 264 consensus_15404#2 CACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCG 310 consensus_15404#0 CACCGT------------------------------------------------------ 306 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 -------------------------GTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 299 consensus_15404#2 GTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 370 consensus_15404#0 -------------------------GTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 341 consensus_15404#3 ---------------------------------------------------GNCCTGCCG 9 ** * consensus_15404#1 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 358 consensus_15404#2 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 429 consensus_15404#0 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 400 consensus_15404#3 CC--CGATGACCACACGG-GACCATTGAAGCNACAGTGAGCCGCCCCA-AGTCAAAGTTG 65 ** ** ** * *** ** *** * ** * ** * * * * ** * consensus_15404#1 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 417 consensus_15404#2 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 488 consensus_15404#0 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 459 consensus_15404#3 TNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGA 125 * * ** * * ** * * *** * * * ** * * * * * consensus_15404#1 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 476 consensus_15404#2 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 547 consensus_15404#0 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 518 consensus_15404#3 ACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAAT-TGT 184 * ** * * * * ** * * ** * **** * * * ** consensus_15404#1 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 536 consensus_15404#2 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 607 consensus_15404#0 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 578 consensus_15404#3 ACATGGCCNGCTA--TAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGA-AC 241 * * * * * * * * * * **** * * * ** ** * consensus_15404#1 CTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAA 596 consensus_15404#2 CTCAGT--------CCGGGTTCGAAAAATTTGTGA-GGGATCGCTACACACTTCTTCCTG 658 consensus_15404#0 CTCAGT--------CCGGGTTCGAAAAATTTGTGA-GGGATCGCTACACACTTCTTCCTG 629 consensus_15404#3 CTCAAA---------CATGTGAGAAAAAGTNA-------ACGGCGTNATATATTTAAAAA 285 **** * * ** * ** * consensus_15404#1 AGACA-GTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAA--GTGCTACTA 653 consensus_15404#2 ATACAAGAGAAAGGATTGTAGCAACAGA--AGTAACTGCCTGGTGGAGGT-ATCCTTTTG 715 consensus_15404#0 ATACAAGAGAAAGGATTGTAGCAACAGA--AGTAACTGCCTGGTGGAGGT-ATCCTTTTG 686 consensus_15404#3 CGGAGGGAGTACCCACTTGNACATTTGA--AGGCTNAAGGTTATAAAATTTCTTCTCCTT 343 * * * * * ** * * * ** * consensus_15404#1 CGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGC--TGAAGTGTCA 711 consensus_15404#2 AGCATGTTTCCCAGATTCCATCAAAGTCATT----------------------------- 746 consensus_15404#0 AGCATGTTTCCCAGATTCCATCAAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAA 746 consensus_15404#3 TGTACTTNAAAAAAAACACAACCANACGCTANGN-------------------------- 377 * * * * * consensus_15404#1 GAAAAGCA-----AAATAATTTAACTAGTTAACTTC-TGATGAAGTATAAA-----CGAA 760 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 AGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAG 806 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GGAAATATAAATTTTAACAAA--ACCAGACTGCTTTTTGTCATACATATATGCTCAATTT 818 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 TGCAGAATACACTATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCAT 866 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GTACT-AGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGT---------------- 861 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 CTGTTCAGCTAAGGATGCCGAACCTCCACTTTATCCCTGTTAACTTAGGGAACAAAGAAA 926 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 ---CCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAA 918 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 ATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGA 986 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGA 978 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 CCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGG 1046 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAA 1038 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 GGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGA 1106 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 GGCTAAAGGTTATAAATTTTCT-------------------------------------- 1060 consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 AGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCC 1166 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 ------------------------------------------------------------ consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 ATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTA 1226 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 ------------------------------------------------------------ consensus_15404#2 ------------------------------------------------------------ consensus_15404#0 ATAGATGACGCTTGACTTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1286 consensus_15404#3 ------------------------------------------------------------ consensus_15404#1 --- consensus_15404#2 --- consensus_15404#0 AAA 1289 consensus_15404#3 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||