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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2564 fasta sequence
[CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAGCCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGAACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAGAGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTATCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAGACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAAGCATCAAGAATTAAACAAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAATCAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAGACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAGAAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAGTCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGGATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAGACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAGGATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCACTCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCCTTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATTTCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGCGTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGTCCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGCATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTCCGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACGGAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTTACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCATCTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCCGGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGAGCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTCATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAGCCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATGTTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCCCGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTAGCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCCGACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCTCTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATGCATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTTAGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCAGCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGCCGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGAAATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAATTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGACCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGACCACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGCTGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGTAAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA]
[+] EMBL AK119440 [CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAGCCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGAACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAGAGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTATCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAGACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAAGCATCAAGAATTAAACAAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAATCAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAGACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAGAAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAGTCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGGATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAGACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAGGATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCACTCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCCTTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATTTCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGCGTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGTCCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGCATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTCCGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACGGAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTTACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCATCTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCCGGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGAGCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTCATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAGCCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATGTTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCCCGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTAGCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCCGACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCTCTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATGCATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTTAGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCAGCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGCCGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGAAATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAATTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGACCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGACCACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGCTGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGTAAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA]
consensusID : consensus_1542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[ACAGATGTTCGTTCCTGGTGATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGAGTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGATCGTCACAGATGGGAAATTGGGGTCAAGGAGGAAGCAACACCGGCAGCAGTATCAGATCAGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG]
[+] EMBL CA757428 [ACAGATGTTCGTTCCTGGTGATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGAGTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGATCGTCACAGATGGGAAATTGGGGTCAAGGAGGAAGCAACACCGGCAGCAGTATCAGATCAGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1542#0 CATGTTAAAAAAGAGGATGTATGAGTTGATCCTAACGAGACTTTGATCGGGGGCTGAAAG 60
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CCCTTTTACAGGAGAGCCTGGAATCACGTAAGTTGGAGCTGCGGGCCAAACCCACTTTGA 120
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ACATGGTGATACCAATGAATGTGTTTGAAAGGTCAAAGGACTTAAGGGCCACTGAACTAG 180
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 AGAATGGAGGAGAAAATGCATCCGTGAGTATCAATGATGGGGATGGTGGCAAGGTGTGTA 240
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TCAAGGTGCTTGTGAAGAAAGGGCACAAACAGCAGATAAAGGAAATGTTCATCCCTGGAG 300
consensus_1542#1 ----------------------------------------ACAGATGTTCGTTCCTGGTG 20
* ****** * ***** *
consensus_1542#0 ACTGCTCACTTGTTCAGAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAAA 360
consensus_1542#1 ATTGCTCACTTGTGCAAAGCACAAAGCAGCAAGAGGCTGCTGAGCTTGAGGAGAAGCAGA 80
* *********** ** ***************************************** *
consensus_1542#0 GCATCAAGAATTAAAC---AAAACGTCATTGCAAACTGGGGACTGAAGCCAAGGAGGAAT 417
consensus_1542#1 GTATTAAGCGCAGGATCCTGGAATACAATGAAAGGGAGGAAGAAGAAATGAATGGTGGAT 140
* ** *** * ** ** * ** *** ** * * **
consensus_1542#0 CAACGCAGGCAGCAGTATCAGGTCTGCTGGGCGTGGCAGCTGGGATGCTGGTTCAAACAG 477
consensus_1542#1 CGTCACAGATGGGAAATTGGGGTCAA--GGAGGAAGCAACACCGGCAGCAGTATCAGATC 198
* * *** * * * **** ** * *** * * ** *
consensus_1542#0 ACGTGGAGGTGCTCGGCGGCGCTACCACATCACTGGTGGGTTCAACTATGGTTATGGCAG 537
consensus_1542#1 AGGTGGACGGGGCATTTGGGATGGTTCGATCAGAGGAG---------------------- 236
* ***** * * ** **** ** *
consensus_1542#0 AAGTCGAGATCATAAACTGGCTGCCACATCCTTTGCCTCAGAAATGATCCGTCTGTATAG 597
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TCATCCCGAGGAAGTGAAGGTGCACGACTGTGAGGTCGCTCTAACATTACTCGATGACGG 657
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ATGAATAGATAATCGTGGAATCCTCCTCCAGTATTTTACTGACATCCGTTGTGCCCGCAG 717
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ACTGCATCTTCCATTCATCCATTGTGCCCGCAGGCTGCATCCGAAGACCCTAAGCTTGAG 777
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GATTCAGTTTACTCGCTTTCTCAGTGCCCTTTTTACCCGTTCGAGCTGTACGCGCGCCAC 837
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TCCTGGACTCCTGGTGCCTGAGTGCCTCCCATCATCTGGTACCAACACTACCCCTCTTCC 897
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TTCCTCCCCCTTCATGATTAACACCTCTTGCTCGATACGCGTTTGTGCGCGTCTACTATT 957
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TCCACCCAGCAATTACGACGGGGTAAAGCAAAAGCGAGGCGCCCGGGGTGACCGGCGCGC 1017
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GTGACCCCGATGCCAAGCCCCGCTCCCCCAATGCGATCGCGCCGCGGTGCTCGTCCGAGT 1077
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CCACTACGGGTTGGCACACCGGTGTCGCGTCCGATGTTACGCAGGGCGCCCGACCCGCGC 1137
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ATCTACAGGGAGCGCATCGTCGCGGCAGTAATCCATGATTACGGCTCGGAATTCTCCGTC 1197
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CGTCCCTGCCCCTTCGGAGCGCACAGGCCACAGTGCCCCCACAATCACAAGGCCCAAACG 1257
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GAATCGACCTCTTTACGCCTTCCAATCCATATGCTCCTCTCTCTTTAGTCTTTACTCTTT 1317
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ACACGGGTGGGCACCCTGCATATGGGGCGTCGTCGTCCTAGCTAGTAGCGCAGTTGCCAT 1377
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CTCGGAGGAAGGATCCATGCAACTGACTCATCAACAGCCATCTTTAAATCTTCTTTTCCC 1437
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GGGCTCCTGACACTGGTGAGCGAACTTACGGCTTTAGGCTGTCCATCCATAGTTGCTGGA 1497
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GCACTAGGGGAAAATAGTATCTGGGTGGCCTCTGGAATCTCTGGAGAAGTGGATTCTGTC 1557
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 ATGGTGTCACTTGCAGCATCACCTTTTATTCCTCCAAGGAATCTGATGTGCGCGGCGCAG 1617
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CCGTGGTGGCCTCGACGCCTCGCGGGGGAAGGGAAGGGGGAGCCTTGACTTTTCGGGATG 1677
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TTTTGACTCTTGCGTGAGGTGCTAGATTCTGCGTCGCGCTGCCTGCCTAGTTGGGTTTCC 1737
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CGGTTTTGTTAGTGTGGCGCGAATAAAGCGGCCGGATTCTGTTTCTTCCTGCCTGCTTTA 1797
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GCCGTGGGATTGTGGTGCATGCTCCCCCTCTCTTTTCTCTTCACTTGTTCTTCTTGATCC 1857
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GACTTGGATAAAGAAGCTAGCCAGCCACCGCATCTATGCGTATAATATCTAATCCCTCCT 1917
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CTTTCTCTCTCTCTCCAGAGTCCAGTCTCAGGTGACCTTGATGTGGAAAAATAAGTAATG 1977
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CATGCTTAGTGTGCCCGTGTTTGTGTTAGTGCCTTGCTTTATGTGTAAGCTATCGCCTTT 2037
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 AGCCGGAGACGTGACTCGTATCTCGCTCCAAGAGATCGTTCACTTGCTCACTTGACTGCA 2097
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 GCATATGACAGCAATTCCTCCACTACGTACGTGGACGCGGTAAATCCTTATGTGCTCTGC 2157
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CGTATAGTGGAAATCAAGGAGAACAAAAAGTTTGTTTACCGAACTATGTTCTCTGGGCGA 2217
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 AATGAAGGCCACATATGGATGTGGATGGGGGTTTGATTGTTTCGAGGGTAATTCAGCCAA 2277
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TTTGGAGAAAAAAGGATTTTGGTGTCTCATGGTGGGGCCGTGCTACCACCTTTGGAGGGA 2337
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CCACCCAAAACAATTCCCCTACTGCACCTCTCACCGTCGAGTGTTGTGCATCTTAGTGAC 2397
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 CACCAGCGCTGAATTGCAACTCCGGCTTGCTGGGTCCCACCGCAAATTCTATATGTGCGC 2457
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 TGTACACTTCAGAGTTCAGACAATTACCGAACGAGAGAAGAGAACAGGGAGTAGATTTGT 2517
consensus_1542#1 ------------------------------------------------------------
consensus_1542#0 AAGTGGGAATGTATAGTACAAAATAGTTCAGGCTCTGCACAGAAGCA 2564
consensus_1542#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||