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Oryza sativa
cluster # 15425 cluster # 15425       Sequences # 22       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15425#0 length = 850 sequences # 17  
consensus_15425#1 length = 593 sequences # 2  
consensus_15425#2 length = 396 sequences # 2  
consensus_15425#3 length = 120 sequences # 1  

consensusID : consensus_15425#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 850
fasta sequence
                              [CGCTGCTGCTCCTGCTCCCCTGCACGCACGCTCGCCGCCGCCGG-GCCATGGCCGCCTTCACCACCACCGCCGCCGGATCCGCCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC-TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC-TGAAGGCACTGACGTTACT-GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT-CCCTGGATACGGTTGAGA-TTGTTAT-GGGTC-TTGAAGAGGC-TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA-TTGCGACAG-TGGA-GGA-TGCTGCTGAGCT-CAT-CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG-AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA-GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT-GAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAAAAAAAAAATAAAAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGT]

[+] EMBL AU198130             [CGCTGCTGCTCCTGCTCCCCTGCACGCACGCTCGCCGCCGCCGGCGCCATGGCCGCCTTCACCACCACCGCCGCCGGATCCGCCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT C                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU075697             [   TGCTGCTCCTGCTCCCCTGCACGCACGCTCGCCGCCGCCGG GCCATGGCCGCCTTCACCACCACCGCCGCCGGATCCGCCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTNTTGTTGTTCGATGTCCATTTTTCTGTGCTAGGATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTG TTTGCGATGCTATGACATTTTAAGCTATTNAAAGTTGTTGAAAAAG                                                                                                                                                                                                                           ]
[+] EMBL C27419               [      TGCTCCTGCTCCCCTGCACGCACGCNCGCCGNCGCCGG GCCATGGCCGCCTTCACCACCACCGCCGCCGGATCCGCCGTAGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGAGGGATTGNTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAA                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU029351             [                                                                                  CCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT GAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAAAA                                                                                                                                                                                                     ]
[+] EMBL AU030006             [                                                                                  CCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCCTTGAAGGCACTGACG GACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGATTTGTTATGGGGTCTTTGAAGANGCTTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTTGCGACAGTTGGA GGA TTCTNCTGAGCTCCATCCGAC ANATTGTT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU166196             [                                                                                  CCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGTAGTTCTCCGTGCTTGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACTNGGTGCCTCTAAGTTCACCGATCTNGGTGCTGATTNCCCTGGATACGGTTGA A TTGTTATGGGGTC TTGAANAGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSC27011             [                                                                                  CCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGNACAATGTGGCTTTCACTCTNCAGACAGTGACACAAAGATTTGCAGNTCTCCGTGC TGNCAAAAAGGGAACAGTGGAGNAGGTTTGTGATATTGTAAAGGAGCAGCTTGTACTTCC TNAAGGCAATTACGGTACT NGTGg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU030098             [                                                                                                     AGCCAAGGCAATCAATGTCNGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCCGTGACACAAAGATTTGTCGTTCTCCGTGC TGCCAAAAAGGAAACNGTGGAGANGGTTTGTGATATTGTAAAGAAGCNGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCNCCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGN GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAATTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTNTT GANGTTGTTGAAAAAGAAATTTCATTGCCGNNGAAAAAA                                                                                                                                                                                                    ]
[+] EMBL AU108902             [                                                                                                            GCAATCAATGTCAGTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGACACAAAGATTTGCAGTTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT GAAGTTGTTGAAAAA                                                                                                                                                                                                                            ]
[+] EMBL BI804412             [                                                                                                                                                                                          AGATTTGCAGTTCTCCGTGC T CCCAAAAGGAAACGGTGGAGAA GTTTGTGATATTGTAAAGAA CAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGC CAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGAC AGATTGTTTCTAATGC AAGTAAACTCAAATTCGTTGG AATAATGTGTCAACTGTCCAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTATGCTA GATTTTACTGTGGAGAGGT CCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT GAAGTTGTTGAAAAAGAAAaa                                                                                                                                                                                                                      ]
[+] EMBL BI804413             [                                                                                                                                                                                           GATTTGCAGTTCTCCGTGC TGCC AAAAGGAAACGGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGAC AGATTGTTTCTAATGC AAGTAAACTCAAATTCGTTGG AATAATGTGTCAACTGTCCAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTATGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGAC TTTTAAGCTATT GAAGTTGTTGAAAAAGAAAaa                                                                                                                                                                                                                      ]
[+] EMBL OSEN63               [                                                                                                                                                                                                    TTCTCCGTGC TGCCAAAAAGGAAACAGTGGAGAAGGTTTGTAATATTGTAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTAAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT NGACAAGATTGTTTCTAATGCAAAG                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL D42459               [                                                                                                                                                                                                                             CAGTGGAGAAGGTTTGTGATATTGTAAAGAAGCAGCTTGTACTTNN TGAAGGCACTGACGTTACT GG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AK058903             [                                                                                                                                                                                                                                                     TAAAGAAGCAGCTTGTACTTCC TGAAGGCACTGACGTTACT GGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTC TTGAAGAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT GAAGTTGTTGAAAAAGAAATTTC                                                                                                                                                                                                                    ]
[+] EMBL AU198131             [                                                                                                                                                                                                                                                                                                                         GTGCTGATT CCCTGGATACGGTTGAGA TTGTTAT GGGTN TTGAANAGGC TTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAA TTGCGACAG TGGA GGA TGCTGCTGAGCT CAT CGACAAGATTGTTTTTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCNTTTTTCTGTGNTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACNTTTTAAGCTATT GAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAAAAAAAAAA                                                                                                                                                                                               ]
[-] EMBL CF308810             [                                                                                                                                                                                                                                                                                                                                                                                     GATCAGTGTCGATGAATCAAGAGCGCAGTCAA TTGGGACAG TGGA GGA TGGTGTTGAGCT CAT TGGCAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCCGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAAAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGATATGACATTTTAAGCTATT GAAGTTGTTCAAAAAGAAATTTCATTGCCGAGGACAAAAAAAAAT                                                                                                                                                                                              ]
[+] EMBL CF308809             [                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTGAGCT CAT CGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTA GATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATT GAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAAAAAAAAAAAAAAAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGT]


>consensus_15425#0 CGCTGCTGCTCCTGCTCCCCTGCACGCACGCTCGCCGCCGCCGGGCCATGGCCGCCTTCA CCACCACCGCCGCCGGATCCGCCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCA GTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGA CACAAAGATTTGCAGTTCTCCGTGCTGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATA TTGTAAAGAAGCAGCTTGTACTTCCTGAAGGCACTGACGTTACTGGTGCCTCTAAGTTCA CCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTT TCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTG AGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGT CAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTAGATT TTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATG ACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAAAAAAAAAAT AAAAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTT GAAGAGGCTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAG GATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGG AATAATGTGT



consensusID : consensus_15425#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 593
fasta sequence
                              [CCCCCCCCCCCGATCCCCTCCCTTCGCCGCCCACCAGCCATCATGCATTCAGTCTCTTTCCCTGTTTAAGGAAGAACCATGTGGCTTTCACTCTCACCAGTGACACCAAGATTTCAGTTCTCCGGCTCCCAAAAGGAAACGGTGGAGAAGGTTTGTGATATTGTAAAGAA-CAGCTTGTACTTCCTGAAGGCACTGACGTTACTGGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT-CCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCACAGCGC-CAGTC-ATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACCAGATTGTTTCTAATCCCAAGTAAACTCCAATTCGTTGGAATAATGTGTCCACTGTCCAAGAGATTAAACTGCTGTTGTTGTTCGATG-CC-TTTTTCTATGCTAGATTTTACTGTGGAGAGGTCCCTTAATACCACATGATTATC-TTGCCTGTTTTGCGATGCTATGAC-TTTTAAGCTATTGAAGTTGTTGAAAAAGAATTCCCATTGCCGAGGAAATCTATTTTCGCTAGGTCTTTCGTCAAAAA]

[+] EMBL BI798223             [CCCCCCCCCCCGATCCCCTCCCTTCGCCGCCCACCAGCCATCATGCATTCAGTCTCTTTCCCTGTTTAAGGAAGAACCATGTGGCTTTCACTCTCACCAGTGACACCAAGATTTCAGTTCTCCGGCTCCCAAAAGGAAACGGTGGAGAAGGTTTGTGATATTGTAAAGAA CAGCTTGTACTTCCTGAAGGCACTGACGTTACTGGTGCCTCTAAGTTCACCGATCTTGGTGCTGATT CCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCACAGCGC CAGTC ATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACCAGATTGTTTCTAATCCCAAGTAAACTCCAATTCGTTGGAATAATGTGTCCACTGTCCAAGAGATTAAACTGCTGTTGTTGTTCGATG CC TTTTTCTATGCTAGATTTTACTGTGGAGAGGTCCCTTAATACCACATGATTATC TTGCCTGTTTTGCGATGCTATGAC TTTTAAGCTATTGAAGTTGTTGAAAAAGAATTCCC                                          ]
[+] EMBL AU101473             [                                                                                                                                                             ATATTGTAAAGAAGCAGCTTGTACTTCCTGAAGGCACTGACG GACTGGTGCCTCTAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCA AGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTTCTGTGCTAGATTTTACTGTGGAGAGGTGCCT  ATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCGAGGAAATCTATTTTCGCTAGGTCTTTCGTCAAAAA]


>consensus_15425#1 CCCCCCCCCCCGATCCCCTCCCTTCGCCGCCCACCAGCCATCATGCATTCAGTCTCTTTC CCTGTTTAAGGAAGAACCATGTGGCTTTCACTCTCACCAGTGACACCAAGATTTCAGTTC TCCGGCTCCCAAAAGGAAACGGTGGAGAAGGTTTGTGATATTGTAAAGAACAGCTTGTAC TTCCTGAAGGCACTGACGTTACTGGTGCCTCTAAGTTCACCGATCTTGGTGCTGATTCCT GGATACGGTTGAGATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATC ACAGCGCCAGTCATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACCAGATTGTTTCT AATCCCAAGTAAACTCCAATTCGTTGGAATAATGTGTCCACTGTCCAAGAGATTAAACTG CTGTTGTTGTTCGATGCCTTTTTCTATGCTAGATTTTACTGTGGAGAGGTCCCTTAATAC CACATGATTATCTTGCCTGTTTTGCGATGCTATGACTTTTAAGCTATTGAAGTTGTTGAA AAAGAATTCCCATTGCCGAGGAAATCTATTTTCGCTAGGTCTTTCGTCAAAAA



consensusID : consensus_15425#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 396
fasta sequence
                              [GAATTCCCGGCCGGCTCTAAGTTCACCGANCTTGGTGCTGATNCCCTGGATACGGNTTGAGATTGTTATGGGNCTTGAAGAGNCTTTCAAGATCAGTGNCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTC-GATGTCCATTTTTCTGTGCTAGATTTTACTGTGGAGAGGTGC-CTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCCGAGGAAATCTATTTTCGCTAAAAAA]

[+] EMBL OSYK2                [GAATTCCCGGCCGGCTCTAAGTTCACCGANCTTGGTGCTGATNCCCTGGATACGGNTTGAGATTGTTATGGGNCTTGAAGAGNCTTTCAAGATCAGTGNCGATGAATCAAGCGCGCAGTCAATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTC GATGTCCATTTTTCTGTGCTAGATTTTACTGTGGAGAGGTGC CTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTAT                                                        ]
[+] EMBL BI802335             [                                                                                                                                                                     TTCTAATGCAAAGTAAACTCAAATTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCAGATGTCCATTTTTCTATGCTAGATTTTACTGTGGAGAGGTGCACTTAATAGCACATGATTATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCCGAGGAAATCTATTTTCGCTAAAAAA]


>consensus_15425#2 GAATTCCCGGCCGGCTCTAAGTTCACCGANCTTGGTGCTGATNCCCTGGATACGGNTTGA GATTGTTATGGGNCTTGAAGAGNCTTTCAAGATCAGTGNCGATGAATCAAGCGCGCAGTC AATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTA AACTCAATTTCGTTGGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTT CGATGTCCATTTTTCTGTGCTAGATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATT ATCATTGGCTGTTTTGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAA TTTCATTGCCCGAGGAAATCTATTTTCGCTAAAAAA



consensusID : consensus_15425#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence
                              [CACCTGACAGTTACATGGTGCCATCTAANGTTCACCNGATCCTTGGGTGCNTGATTCCCTTGGATACGGGTTGAGATTTGTTATGGGTCTTGAAGAGGCCTTTCAAGATCAAGTGTCGAT]

[+] EMBL D43460               [CACCTGACAGTTACATGGTGCCATCTAANGTTCACCNGATCCTTGGGTGCNTGATTCCCTTGGATACGGGTTGAGATTTGTTATGGGTCTTGAAGAGGCCTTTCAAGATCAAGTGTCGAT]


>consensus_15425#3 CACCTGACAGTTACATGGTGCCATCTAANGTTCACCNGATCCTTGGGTGCNTGATTCCCT TGGATACGGGTTGAGATTTGTTATGGGTCTTGAAGAGGCCTTTCAAGATCAAGTGTCGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15425#0      CGCTGCTGCTCCTGCTCCCCTGCACGCACGCTCGCCGCCGCCGGGCCATGGCCGCCTTCA 60
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      ------------------------------------------------------------
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      CCACCACCGCCGCCGGATCCGCCGTCGCCTTCGCGCGGCCAGCCAAGGCAATCAATGTCA 120
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      ---------------CCCCCCCCCCCGATCCCCTCCCTTCGCCGCCCACCAGCCATCATG 45
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      GTTCAGTCTCTTTCGCTGGTTTAAGGAAGAACAATGTGGCTTTCACTCTGCAGCCAGTGA 180
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      CATTCAGTCTCTTTCCCTGTTTAAGGAAGAACCATGTGGCTTTCACTCTC--ACCAGTGA 103
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      CACAAAGATTTGCAGTTCTCCGTGCTGCCAAAAAGGAAACAGTGGAGAAGGTTTGTGATA 240
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      CACCAAGATTTCAG---TTCTCCGGCTCCCAAAAGGAAACGGTGGAGAAGGTTTGTGATA 160
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      TTGTAAAGAAGCAGCTTGTACTTCCTGAAGGCACTGACGTTACTGGTGCC-TCTAAG-TT 298
consensus_15425#2      -----------------------------------GAATTCCCGGCCGGC-TCTAAG-TT 23
consensus_15425#1      TTGTAAAGAA-CAGCTTGTACTTCCTGAAGGCACTGACGTTACTGGTGCC-TCTAAG-TT 217
consensus_15425#3      ----------------------------CACCTGACAGTTACATGGTGCCATCTAANGTT 32
                                                           *  *    *  * * *****  **

consensus_15425#0      CACCG-ATCTT--GGTGCT-GATTCCC-TGGATACGGTT-GAGATT-GTTATGGGTCTTG 351
consensus_15425#2      CACCG-ANCTT--GGTGCT-GATNCCC-TGGATACGGNTTGAGATT-GTTATGGGNCTTG 77
consensus_15425#1      CACCG-ATCTT--GGTGCT-GATTCC--TGGATACGGTT-GAGATT-GTTATGGGTCTTG 269
consensus_15425#3      CACCNGATCCTTGGGTGCNTGATTCCCTTGGATACGGGTTGAGATTTGTTATGGGTCTTG 92
                       ****  * * *  *****  *** **  ********* * ****** ******** ****

consensus_15425#0      AAGAGGC-TTTCAAGATCA-GTGTCGATGAATCA-AGCGCGCAGTCAATTGCGACAGTGG 408
consensus_15425#2      AAGAGNC-TTTCAAGATCA-GTGNCGATGAATCA-AGCGCGCAGTCAATTGCGACAGTGG 134
consensus_15425#1      AAGAGGC-TTTCAAGATCA-GTGTCGATGAATCACAGCGC-CAGTCA-TTGCGACAGTGG 325
consensus_15425#3      AAGAGGCCTTTCAAGATCAAGTGTCGAT-------------------------------- 120
                       ***** * *********** *** ****                                

consensus_15425#0      AGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTT 468
consensus_15425#2      AGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTAAACTCAATTTCGTT 194
consensus_15425#1      AGGATGCTGCTGAGCTCATCGACCAGATTGTTTCTAATCCCAAGTAAACTCCAATTCGTT 385
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      GGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTT 528
consensus_15425#2      GGAATAATGTGTCAACTGTCAAAGAGATTAAACTGCTGTTGTTGTTCGATGTCCATTTTT 254
consensus_15425#1      GGAATAATGTGTCCACTGTCCAAGAGATTAAACTGCTGTTGTTGTTCGATGCC--TTTTT 443
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      CTGTGCTAGATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTT 588
consensus_15425#2      CTGTGCTAGATTTTACTGTGGAGAGGTGCCTTAATAGCACATGATTATCATTGGCTGTTT 314
consensus_15425#1      CTATGCTAGATTTTACTGTGGAGAGGTCCCTTAATACCACATGATTATC-TTGCCTGTTT 502
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      TGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCGAGG 648
consensus_15425#2      TGCGATGCTATGACATTTTAAGCTATTGAAGTTGTTGAAAAAGAAATTTCATTGCCCGAG 374
consensus_15425#1      TGCGATGCTATGAC-TTTTAAGCTATTGAAGTTGTTGAAAAAGAATTCCCATTGCC-GAG 560
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      AAAAAAAAA----AATAAAAAGTTCACCGATCTTGGTGCTGATTCCCTGGATACGGTTGA 704
consensus_15425#2      GAAATCTATTTTCGCTAAAAAA-------------------------------------- 396
consensus_15425#1      GAAATCTATTTTCGCTAGGTCTTTCGTCAAAAA--------------------------- 593
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      GATTGTTATGGGTCTTGAAGAGGCTTTCAAGATCAGTGTCGATGAATCAAGCGCGCAGTC 764
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      ------------------------------------------------------------
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      AATTGCGACAGTGGAGGATGCTGCTGAGCTCATCGACAAGATTGTTTCTAATGCAAAGTA 824
consensus_15425#2      ------------------------------------------------------------
consensus_15425#1      ------------------------------------------------------------
consensus_15425#3      ------------------------------------------------------------
                                                                                   

consensus_15425#0      AACTCAATTTCGTTGGAATAATGTGT 850
consensus_15425#2      --------------------------
consensus_15425#1      --------------------------
consensus_15425#3      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)