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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 966 fasta sequence
[ATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG-TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC-GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCAAAT]
[+] EMBL CA764788 [ATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTC TTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGNGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTCTGGGATGGAAACAACACCAAGTCACCGGGGAACGTCACGTGGCATTT ]
[+] EMBL CF304202 [ ACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCT ]
[+] EMBL CB633319 [ TAGGGCCTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTTTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTAATCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAGTACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACA ]
[+] EMBL CB238424 [ TATTTATATTATGCCTCTGGTGAAGGGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTT ]
[+] EMBL CF305004 [ TTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCAAAT]
[+] EMBL AK062613 [ CCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGT ]
consensusID : consensus_15432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[TCCTTATTTTTTTGGCACAGAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGGCGGAATCGAAATAGGCACGCTCATGGTCCTTATTAATGAGAGGTTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACTTCAGTTTAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACATGCGTAAGCACTAAGCAGTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGCTAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAGGTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATGCAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAGTTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGTGCTTCTGTTAT]
[+] EMBL CB633320 [TCCTTATTTTTTTGGCACAGAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGGCGGAATCGAAATAGGCACGCTCATGGTCCTTATTAATGAGAGGTTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACTTCAGTTTAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACATGCGTAAGCACTAAGCAGTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGCTAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAGGTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATGCAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAGTTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGTGCTTCTGTTAT]
consensusID : consensus_15432#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 753 fasta sequence
[GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCTCCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA-CAGAGGG-AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT-CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG-CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC-TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF334043 [GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCTCCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCCCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATC ]
[+] EMBL AK062385 [ GATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAA ]
[+] EMBL CF301016 [ AAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATG ]
[+] EMBL CF308619 [ ACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGTAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGG ]
[+] EMBL OSS15816A [ CGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAANAAACAGCACAAAAGGCACAACCGNGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTTCACGGAGGCCTGCGTNCACGTCAGGCGCGACGGNATAGTGTGCTTCAATCTCAGCAGTTAGCACTNCATGTTT CATTTGTgn ]
[+] EMBL CF293059 [ GTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTga ]
[+] EMBL C73939 [ AGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAA NAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTTGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTNATCCCATTATTTATTGGGATGTTAATATGGNTAT ]
[+] EMBL C99720 [ GCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCA TTGGCAAGCAAGGCGCCAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCNCGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99715 [ cttCGACACCAGAGGGTAGGAGGGATCGTCCCAGAACAAAT TGGAGGATTTTCTCCCAAAGAAACCTCTCATTAATTAGGACC TGAGCGTGCCTATTTCGNTTCCGCCGATTGGGCA TTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAG CCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCNGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCNATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA763911 [ ATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTG GCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACA ]
[-] EMBL CF334042 [ GACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCTTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGCCAAAAAAAAAAAAAA ]
[-] EMBL CF301017 [ GACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACAAAAAA ]
consensusID : consensus_15432#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence
[CGAAGACAACAGACAGCGACACAGAGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCCCGATTGGGCAC-TTGGCAAG-CAAGGCGCAAGCAACAG-CACAAAAGGCACAA-CCGAGCCCC-TGAAACCC-AAG-TTGCAGCGC-AC-GGCATATCCCCAGC-TTCCT-CCACGAAGGCCTGCGTGCACG-TCAGGCGCGACGGAATAGTG-TGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCA-AGGGGGGGCATAGAGTTTGATCCCATTATTAATTGGGATGTAAATATGGATATTGTCCGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGAC-ATCCGGCGAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA]
[+] EMBL BI795327 [CGAAGACAACAGACAGCGACACAGAGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCCCGATTGGGCAC TTGGCAAG CAAGGCGCAAGCAACAG CACAAAAGGCACAA CCGAGCCCC TGAAACCC AAG TTGCAGCGC AC GGCATATCCCCAGC TTCCT CCACGAAGGCCTGCGTGCACG TCAGGCGCGACGGAATAGTG TGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCA AGGGGGGGCATAGAGTTTGATCCCATTATTAATTGGGATGTAAATATGGATATTGTCCGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGAC ATCCGGCGAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA]
[+] EMBL AU096810 [ TTGGCCACTTTGGCAAGCCAAGGCGCAAGCAACAGCCACAAAAGGCATAANCCGAGCCCCTTGAAACCCAAAGTTTGCAGCGCTACGGGCATATCCCCAGCTTTCCTCCCACGAAGGCCTGCGTGCACGTTCAGGCGCGACGGAATAGTGTTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGAATTGCCGAAAATGTATTCACGACAATCCGGCGAATGCAAAGTTGAGGAATAAGTTCACTTTAA ]
consensusID : consensus_15432#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence
[TTTTTTGTCACAGAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTGTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAACAGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTACTCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGG]
[+] EMBL CF293060 [TTTTTTGTCACAGAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTGTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAACAGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTACTCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15432#2 GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCT 60
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 -----------------------------------------TCCTTATTTTTTTGGCACA 19
consensus_15432#4 ------------------------------------------------TTTTTTGTCACA 12
consensus_15432#0 ------------------------------------------------------------
consensus_15432#2 CCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACA 120
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 GAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCC 79
consensus_15432#4 GAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCC 72
consensus_15432#0 -----------------------------------------------------ATAAACA 7
consensus_15432#2 AAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCG 180
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 AATTAATAATTGGATCAAACTCTATGCCCCCCCT--TGATTGCCCTGCCATACTCTCACA 137
consensus_15432#4 AATTAATAATTGGATCAAACTCTATGCCCCCCCTG-TGATTGCCCTGCCATACTCTCACA 131
consensus_15432#0 AAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCG 67
consensus_15432#2 ATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGT 240
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 GTCTCAGCGAC------------------------------------------------- 148
consensus_15432#4 GTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAAC 191
consensus_15432#0 ATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGT 127
consensus_15432#2 GGTTGG-ACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGC 299
consensus_15432#3 ------------------------------------------CGAAGACAACAGA-CAGC 17
consensus_15432#1 ------------------------------------------------------------
consensus_15432#4 AGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTAC 251
consensus_15432#0 GGTTGG-ACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGC 186
consensus_15432#2 GACACAGAGGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAA------ 353
consensus_15432#3 GACACAGAGG-AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAA------ 70
consensus_15432#1 ----AAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGT------ 198
consensus_15432#4 TCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGT------ 305
consensus_15432#0 GACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCT 246
* * * * * * * * * * *
consensus_15432#2 -GAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTG--GGC 410
consensus_15432#3 -GAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCC-CCGATTG--GGC 126
consensus_15432#1 -CGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCA 257
consensus_15432#4 -CGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCA 364
consensus_15432#0 CCGTGCCTCTCCTCGACTTT-ACCATGATCA-GCCTACCATGGCATGAACATTTC-TTGC 303
*** * * * ** * * * *
consensus_15432#2 ACTTGGCAAGCAAGGCGCAAGCAACAGCA-CAAAAGGCACAACCGAGCCCCTGAAACCCA 469
consensus_15432#3 ACTTGGCAAGCAAGGCGCAAGCAACAGCA-CAAAAGGCACAACCGAGCCCCTGAAACCCA 185
consensus_15432#1 ACTTGGGTTTCAGGGGCTCGGTTGTGCCT-TTTGTGCTGTTGCTTGCGCCTTGCTTGCCA 316
consensus_15432#4 ACTTGGGTTTCAGGGGCTCGGTTGTGCCT-TTTGTGCTGTTGCTTGCGCCTTGCTTGCCA 423
consensus_15432#0 TTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCT 363
* ** * * * *
consensus_15432#2 AGTTGCAGCGCACGG-CATATCCCCAGCTTCCTCCACGAAGGCCTGCGT-GCACGTCAGG 527
consensus_15432#3 AGTTGCAGCGCACGG-CATATCCCCAGCTTCCTCCACGAAGGCCTGCGT-GCACGTCAGG 243
consensus_15432#1 AGTGCC--CAATCGG-CGGAATCGAAATAGGCACGCTCATGGTCCTTAT-TAATGAGAGG 372
consensus_15432#4 AGTGCC--CAATCGG--------------------------------------------- 436
consensus_15432#0 ATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGG 423
* * **
consensus_15432#2 CGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCT 587
consensus_15432#3 CGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCT 303
consensus_15432#1 TTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACT 432
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 TGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACT 483
consensus_15432#2 G-AGAC---TGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGA-GT----TTGAT 638
consensus_15432#3 G-AGAC---TGTGAGAGTATGGCAGGGCAATCA-AGGGGGGGCATAGA-GT----TTGAT 353
consensus_15432#1 TCAGTT---TAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACAT----GCGTA 485
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 CTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGT 543
consensus_15432#2 CCAATTATTAA----TTGGGATGTAAATATGGATATT---GTCAGCATGTAGCTATGTGC 691
consensus_15432#3 CCCATTATTAA----TTGGGATGTAAATATGGATATT---GTCCGCATGTAGCTATGTGC 406
consensus_15432#1 AGCACTAAGCA----GTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGC 541
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 TACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAAT 603
consensus_15432#2 AATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 751
consensus_15432#3 AATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGT 466
consensus_15432#1 TAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAG 601
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 CAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTC 663
consensus_15432#2 AA---------------------------------------------------------- 753
consensus_15432#3 TTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGACATCCGGC 526
consensus_15432#1 GTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATG 661
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 TCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCG 723
consensus_15432#2 ------------------------------------------------------------
consensus_15432#3 GAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA---------------------- 564
consensus_15432#1 CAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAG 721
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 TTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACCGTGAACGTCACGTGGCA 783
consensus_15432#2 ------------------------------------------------------------
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 TTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGT 781
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 TTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCA 843
consensus_15432#2 ------------------------------------------------------------
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 GCTTCTGTTAT------------------------------------------------- 792
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 AATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAAC 903
consensus_15432#2 ------------------------------------------------------------
consensus_15432#3 ------------------------------------------------------------
consensus_15432#1 ------------------------------------------------------------
consensus_15432#4 ------------------------------------------------------------
consensus_15432#0 AAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCA 963
consensus_15432#2 ---
consensus_15432#3 ---
consensus_15432#1 ---
consensus_15432#4 ---
consensus_15432#0 AAT 966
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||