|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 542 fasta sequence
[TTTTTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG-AACACAAA-TGCTCGATTCTGAC-AAAGTTTCCATCTACTACATGTTTA-TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT-CCAT-CCTCATCT-TGATCATGTTCT-TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT-GGCGCCTCTGCACATGTTCATAGTA-GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT-GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCCTCTCT]
[-] EMBL BI803917 [TTTTTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAAGTGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCTGTGATCATGTTCTGTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGGGCCTCTGGACATGTTCATAGTA GGACATTTCCTGTGCCATTGGAGCGTTATACATCTGGTCTCTCT GGTTCTG ]
[+] EMBL CF300597 [ ttttTTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAA AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAAAAAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCCTCTC ]
[-] EMBL AU064075 [ CGCATAGAAAGCACTTCAGATACCAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGC ]
[-] EMBL AU032487 [ tttttttttCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGGCGCCTCTGCACATGTTCATAGTAGGGACATGTCCTGTGCCATTGGAGCGTTATANATCTTGTCTCTCTGGCTTCTGATGAACAAGCANTCANCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGgc ]
[-] EMBL AK121057 [ GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATATTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCTCCTGTCCTCTCT]
[-] EMBL OSS12685A [ tttttttttGAAAGCACTTCAGATAACAGTA TCNGGGNTTCTTANAATAGNCCNCTTTTTCAGAAACACAAA TGCTCGATTCTGACAAAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGNACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGtt ]
[-] EMBL AU069820 [ tTTCCTTAAAATAGGCCCCTTTTTCAG AACACAAA TGCNCGATTCTGAC AAAG TTCCATCTACTACATGGTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGANGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGNACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAANACAACTANTCAAGGGCCA ]
[-] EMBL CF299758 [ tttttTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCATCCCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCTCC ]
[-] EMBL OSR19521A [ aAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTNCATGTTTANTTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCN TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGt ]
[-] EMBL OSS10627A [ A TGCTCGATTCTGAC AAAG TTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGNACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCC ]
[-] EMBL CF300598 [ ACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCT ]
[-] EMBL AU065987 [ GGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGNACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGNACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGtt ]
[-] EMBL OS1321918 [ AGAGAAANTCGAGNCAGGACTCNCNGGTCTCGTAGCAGNAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGGACAAGNACTCACCTCTCTAAAAAGGTTTCAGAGAAGNACACAACTATTCAAGGGCCAA GGTTTTC ]
consensusID : consensus_15440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 472 fasta sequence
[GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCAAGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA]
[-] EMBL AK061597 [GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCAAGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA]
[-] EMBL BI811772 [ tttttttTTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCcgg ]
consensusID : consensus_15440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 443 fasta sequence
[TTTTTTTTTTTGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT-GCACATGTTCATAGTAGGACATGTCCT-GTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAG]
[-] EMBL AU078060 [TTTTTTTTTTTGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT GCACATGTTCATAGTAGGACATGTCCT GTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAG]
[-] EMBL AU070647 [ ttttTTTAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT GCACATGTTCATAGTAGGACATGTCCT GTGCCATTGGA ]
[-] EMBL BI806540 [ ttttTTTTTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATG TTATT ATTTTAC TGATGACCACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGGCACATGTTCATAGTAGGACATGTCCTGGTGCCATTGGA ]
[-] EMBL AU031821 [ ttTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTNCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGNATGCATAGAGGCAACCCTTCNCCTCATGGCGCC ]
consensusID : consensus_15440#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATCCCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAAGCAGCACAGTCAGTGAGATGCATGCATAGAGNAACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTT]
[-] EMBL AU070474 [TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATCCCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAAGCAGCACAGTCAGTGAGATGCATGCATAGAGNAACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTT]
consensusID : consensus_15440#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 277 fasta sequence
[TTTTTCACACGCNTACNANGCCANTNCGGTANANCACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCANAGGCAGTCGAGGCANCACTCGCA]
[-] EMBL AU223276 [TTTTTCACACGCNTACNANGCCANTNCGGTANANCACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCANAGGCAGTCGAGGCANCACTCGCA]
consensusID : consensus_15440#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence
[CCTCTTCTTGAATTGTGTCTCCAAAACAGGAGAACAAGAAGAACATCATAAGAAAAAAAAACAAATTGCTCTCACCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTTTTCTCCTCGTGCCGATTC]
[-] EMBL CA999321 [CCTCTTCTTGAATTGTGTCTCCAAAACAGGAGAACAAGAAGAACATCATAAGAAAAAAAAACAAATTGCTCTCACCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTTTTCTCCTCGTGCCGATTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15440#3 TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATC 60
consensus_15440#5 ------------------------------------------------------------
consensus_15440#1 ------------------------------------------------------------
consensus_15440#4 ------------------------------------------------------------
consensus_15440#2 ------------------------------------------------------------
consensus_15440#0 ---------------------------------------------------------TTT 3
consensus_15440#3 CCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGG 120
consensus_15440#5 ---------------------------------------CCTCTTCTTGAATTGTGTCTC 21
consensus_15440#1 --------------------------------------------------GAAAGCACTT 10
consensus_15440#4 ----------------------------------TTTTTCACACGCNTACNANGCCANTN 26
consensus_15440#2 ---------------------------------------TTTTTTTTTTTGAAAGCACTT 21
consensus_15440#0 TTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATA-GAAAGCACTT 62
consensus_15440#3 CAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAA--------GCAGCACAGTCAGTG 172
consensus_15440#5 CAAAACAGG-AGAACAAGAAGAACATCATAAGAAAAA--------AAAACA-AATTGCTC 71
consensus_15440#1 CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 68
consensus_15440#4 CGGTANANC-ACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTC 85
consensus_15440#2 CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 79
consensus_15440#0 CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 120
* * * * * * * ** * *
consensus_15440#3 AGATGCATGCATAGAGN-AACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGG 231
consensus_15440#5 TCAC-CATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGG 130
consensus_15440#1 G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 126
consensus_15440#4 G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 143
consensus_15440#2 G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 137
consensus_15440#0 G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 178
* * ** ** * * * * * * * ***** * * * **
consensus_15440#3 AC-ATGTCCTGTGCCATT---GGAGCGTTATACATC----TTGTCTCTCTGCTTCTGATG 283
consensus_15440#5 AC-ATGTCCTGTGCCATT---GGAGCGTTATACATC----TTGTCTCTCTGCTTCTGATG 182
consensus_15440#1 CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 186
consensus_15440#4 CTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTG 203
consensus_15440#2 CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 197
consensus_15440#0 CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 238
** * ** ** ** * * * ** **** * ** * **
consensus_15440#3 AACAAGCACTCACCTC--TCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAG-GGCC 340
consensus_15440#5 AACAAGCACTCACCTC--TCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAG-GGCC 239
consensus_15440#1 ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 245
consensus_15440#4 ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCANAGGCAGTC 262
consensus_15440#2 ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 256
consensus_15440#0 ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 297
* ** * ** * * * * ** * ** * * ** * * * * *
consensus_15440#3 AAGGTT------------------------------------------------------ 346
consensus_15440#5 AAGGTTTTCTCCTCGTGCCGATTC------------------------------------ 263
consensus_15440#1 GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 305
consensus_15440#4 GAGGCANCACTCGCA--------------------------------------------- 277
consensus_15440#2 GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 316
consensus_15440#0 GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 357
***
consensus_15440#3 ------------------------------------------------------------
consensus_15440#5 ------------------------------------------------------------
consensus_15440#1 GTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTG 365
consensus_15440#4 ------------------------------------------------------------
consensus_15440#2 ATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTG 376
consensus_15440#0 ATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTG 417
consensus_15440#3 ------------------------------------------------------------
consensus_15440#5 ------------------------------------------------------------
consensus_15440#1 CTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCA 425
consensus_15440#4 ------------------------------------------------------------
consensus_15440#2 TGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTC 436
consensus_15440#0 TGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTC 477
consensus_15440#3 ------------------------------------------------------------
consensus_15440#5 ------------------------------------------------------------
consensus_15440#1 AGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA------------- 472
consensus_15440#4 ------------------------------------------------------------
consensus_15440#2 TAAAAAG----------------------------------------------------- 443
consensus_15440#0 TAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCC 537
consensus_15440#3 -----
consensus_15440#5 -----
consensus_15440#1 -----
consensus_15440#4 -----
consensus_15440#2 -----
consensus_15440#0 TCTCT 542
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||