These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1491 fasta sequence [TCCCAAACCCCTCTCGCACCCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT-CGGGAAGAAGTACGT-CATTCTCTTCTTCTACCCGTTGGACTTCACC-TTCGTCTG-CCCGACC-GAGATTACCGCTTTCAGTG-ACAGATACGATGAGTTCGAGAAGTTGAACACTG-AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT-CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT-CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA-TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTT-AGTGCGTTTCAAGATCGCTTCTGTTTTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCTTTTTTTTAACACAAGGGCCAATTTCCGGCCCTTTAATTTAATTTCCCCTTATAGGAATTCTTTTAAAAATCCCTTGCCCGTCTTTTAAAAACTTGGTAATTGAAAAACCCTTGGTTTTCCCAATTTAATTCCCTTTAAAAAAAATCCCCTTTTCCCCATTTGGCTTATTACCAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCAACCTTATACTTCCGGAATTTAAGGTTTTACCCTTAAAAAAAAAAAACCCTTTTTCCCTTTTTTGGGGTTTCCCAAATTATTTTTTTTACCC] [+] EMBL AK068919 [TCCCAAACCCCTCTCGCACCCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTT AGTGCGTTTCAAGATCG ] [+] EMBL AK104703 [ CCCAAACCCCTCTCGCACCCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTT ] [+] EMBL BP184475 [ TCGCACCCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTG TTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGG ] [+] EMBL CB655092 [ CCCACCCTAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGCGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAATCCAATTTCCAAGCCCTTTGGCGCCTTGATCCCTGACCAGGGAATTGCTCCTGAGAGGAC ] [+] EMBL AU162786 [ CCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGNCCATGGCCGGCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACNCCCTCTCCCTCCCCCGCGCTCCCGCCGCCA GNCCCTCCGCCTCNCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACCGGAGATTACCGCTTTCAGTGAACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGNACTCTACCATTAACAACCTTGCCATTGGACG AG GTAGATGAG ] [+] EMBL AU182276 [ GCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCCCCCGCCGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTNATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGAC ] [+] EMBL BP185001 [ acgagGCGCCGCACTCCCTCTCCCTCCCCCGCGCTCCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAG ] [+] EMBL BP184961 [ ACGAGGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAGTCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGG ] [-] EMBL CB682775 [ TCATCAACGTGAAGCTGTCCGACTACAT CGGGAAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTAAGCATGTATACATGTT AGTGCGTTTCAA ] [+] EMBL AU160910 [ ACATCCGGGAAGAAGTACGTCCATTCTCTTCTTCTACCCGTTGGACTTCACCTTTCGTCTGCCCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGNGTTCGAGAAGTTGAACACTGAAGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGNCCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTA TTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTAaaaaaa ] [-] EMBL CB655093 [ AAGAAGTACGT CATTCTCTTCTTCTACCCGTTGGACTTCACC TTCGTCTG CCCGACC GAGATTACCGCTTTCAGTG ACAGATACGATGAGTTCGAGAAGTTGAACACTG AGATCCTCGGTGTTTCAATTGACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGCCCCTTCAGGCGTTGCAGTACGTCTAGGACAACCCGGCCGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCACGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCTAAAGGAATAAGGCTTTGT ] [+] EMBL BI796730 [ GTCCAGACA ACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAAT CAATTTCGAAGTCCTTTGGTGTCTTGATCCCTGACCAGGGAATTGCT CTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAG TTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCC AAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAAC AATAAGGCTTTGTTTTGGTCGTGTTATAaaaaaaaa ] [+] EMBL AU065872 [ GATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTTAAGTGCGTTTCAAGATCGCTTCTGTTTTGGGTAAAAAA ] [+] EMBL OSS14328A [ GATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAACCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTG ] [+] EMBL AU096571 [ ATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTA TTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTNACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTT AGTGCGTTTCAAGATCGCTTCTGTTTTGGGTTAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU057894 [ cnGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGNATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCNCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGA TTTTGTTANTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATNNATGTT AGTGCGTTTCAAGATCGCTTCTGTTTTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF319008 [ AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCTTTTTTTTAACACAAGGGCCAATTTCCGGCCCTTTAATTTAATTTCCCCTTATAGGAATTCTTTTAAAAATCCCTTGCCCGTCTTTTAAAAACTTGGTAATTGAAAAACCCTTGGTTTTCCCAATTTAATTCCCTTTAAAAAAAATCCCCTTTTCCCCATTTGGCTTATTACCAAAAAGCCCCCCCCCAATCCCCTTTCCAAAAATTTGCCAACCTTATACTTCCGGAATTTAAGGTTTTACCCTTAAAAAAAAAAAACCCTTTTTCCCTTTTTTGGGGTTTCCCAAATTATTTTTTTTACCC] consensusID : consensus_15444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 592 fasta sequence [AATTGACCAGTGTGTTCTCCCATCTTGCATGGGTNCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTGGTGTCTTGA-NCCCTGACCAGGGAATTGCTCTGAGAGGACTTTT-CATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACANCCTTGCCATTGGACGCAGTNTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTNTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTGTTACTTGTTCGCCNCCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096250 [AATTGACCAGTGTGTTCTCCCATCTTGCATGGGTNCAGACAGACAGGAAATCTGGTGGGCTTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTGGTGTCTTGA NCCCTGACCAGGGAATTGCTCTGAGAGGACTTTT CATCATTGACAAGGAGGGAGTGATTCAGCACTCTACCATTAACANCCTTGCCATTGGACGCAGTNTAGATGAGACCATGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTNTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTGTTACTTGTTCGCCNCCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029370 [ GAAATACCCATTGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTGGTGTCTTGATCCCCTGACCAGGGAATTGCTCTGANAGGACTTTTCCATCATTGACAAGGAGGGANTGATTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGACCCTTNAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGAAGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCATCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGAGAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATAAA NAAAAAAAAAA ] consensusID : consensus_15444#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 456 fasta sequence [ATGTCACGCACCTTCTATCCACTTAACCACACGCCTTGTCCACTTGTGANACGTCACGTGCTACGATGACGACCCACTGACGGACCCTTCACGGCCGCTTGCCACGTACGCTCCACGGACACATCCCGGACCGAGGCTGTTGCCCGGTCCGGATGGAATGCCCGGTGATCACAGTCGATGAAGCCTGATCTCCCACAGGGAAGCCACATGGAGTACTTCGCGGCCATTCTAAGCACCACCACTATTGCATATGCCTGGTGATGGATGTATGGGAGTTCTNTTTGCTTTCGCCGAGAGCCACTTGCGTTTCGTCTCCACAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTTAGTGCGTTTCAAAAAAAAAA] [+] EMBL BQ908828 [ATGTCACGCACCTTCTATCCACTTAACCACACGCCTTGTCCACTTGTGANACGTCACGTGCTACGATGACGACCCACTGACGGACCCTTCACGGCCGCTTGCCACGTACGCTCCACGGACACATCCCGGACCGAGGCTGTTGCCCGGTCCGGATGGAATGCCCGGTGATCACAGTCGATGAAGCCTGATCTCCCACAGGGAAGCCACATGGAGTACTTCGCGGCCATTCTAAGCACCACCACTATTGCATATGCCTGGTGATGGATGTATGGGAGTTCTNTTTGCTTTCGCCGAGAGCCACTTGCGTTTCGTCTCCACAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTTGTTACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTTAGTGCGTTTCAAAAAAAAAA] consensusID : consensus_15444#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 381 fasta sequence [CAGGATTCGGCACGAGCGCACCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCGCCTGCCTCGCCGCACTCCCTCTCCCTCCCTCGCTCCCCCGCCGCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCCTCCAGATTCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGGGGTGTGGACGATGCGCCGCTGGTCGGGAACAANGCGCCCGACTTCGATGCGGANGCAGTCTTCGACCAAGAATTCATCAACGTGAANCTGTCCGACTACATCGGGAAGAAGTACGTCATTCTCTT] [+] EMBL AA753022 [CAGGATTCGGCACGAGCGCACCAATCCAACCCAATCCCCTCCTCATCCACTCCGCTCTGCGGCCATGGCCGCCTGCTGCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCGCCTGCCTCGCCGCACTCCCTCTCCCTCCCTCGCTCCCCCGCCGCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCCTCCAGATTCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGGGGTGTGGACGATGCGCCGCTGGTCGGGAACAANGCGCCCGACTTCGATGCGGANGCAGTCTTCGACCAAGAATTCATCAACGTGAANCTGTCCGACTACATCGGGAAGAAGTACGTCATTCTCTT] [+] EMBL BE040474 [ GCTCCTCCCTCGCCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATCCCGCCTGCCTCGCCGCACTCCCTCTCCCTCCCTCGCTCCCCCGCCGCCGCCGCCAGGCCCCTCCGCCTCTCCGCCTCCTCCTCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCGGCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15444#0 ------------------------------------------------------------ consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 AATTGACCAGTGTGTTCTCCCATCTTGCATGGGTNCAGACAGACAGGAAATCTGGTGGGC 60 consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 ------------------------------------------------------------ consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 TTGGTGATCTGAAATACCCATTGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTG 120 consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 -------------------------------TCCCAAACCCCTCTCGCAC---CCAATCC 26 consensus_15444#3 ---------------------------------CAGGATTCGGCACGAGCGCACCAATCC 27 consensus_15444#1 GTGTCTTGANCCCTGACCAGGGAATTGCTCTGAGAGGACTTTTCATCATTGACAAGGAGG 180 consensus_15444#2 ---------------------------ATGTCACGCACCTTCTATCCACTTAACCACACG 33 consensus_15444#0 AACCCAATCCCCTCCTCATCCACTCCGCTCT-GCGGC--CATGGCCGCCTGCTGCTCCTC 83 consensus_15444#3 AACCCAATCCCCTCCTCATCCACTCCGCTCT-GCGGC--CATGGCCGCCTGCTGCTCCTC 84 consensus_15444#1 GAGTGATTCAGCACTCTACCATTAACANCCTTGCCATTGGACGCAGTNTAGATGAGACCA 240 consensus_15444#2 CCTTG--TCCACTTGTGANACGTCACGTGCT-ACGAT--GACGACCCACTGACGGACCCT 88 ** * * * ** * * * * * * consensus_15444#0 CCTCG--CCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATC-CCCCCCGC 140 consensus_15444#3 CCTCG--CCACCGCCGTCTCCTCCTCCTCCGCCAAGCCCCTCGCCGGCATC-CCGCCTGC 141 consensus_15444#1 TGAGGACCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGAC-GAGGTN--TGCCCGG 297 consensus_15444#2 TCACGGCCGCTTGCCACGTACGCTCCA-CGGACACATCCCGGACCGAGGCTGTTGCCCGG 147 * * * * * * * *** * * ** * consensus_15444#0 -CGCGCCGCACTCCCTCTCCCTCCC--CCGCGC---TCCCGCCGCC-------AGGCCCC 187 consensus_15444#3 -CTCGCCGCACTCCCTCTCCCTCCC--TCGCTC---CCCCGCCGCCG-CCGCCAGGCCCC 194 consensus_15444#1 -CCGGATGGAA-GCCCGGTGACAA--GTCGATGAAGCCTGACCCCA---AGGGAAGCAA- 349 consensus_15444#2 TCCGGATGGAATGCCCGGTGATCACAGTCGATGAAGCCTGATCTCCCACAGGGAAGCCAC 207 * * * * ** ** * * * * ** consensus_15444#0 TCCGCCTCTCCGCCTCCTCATCCAGATCCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCG 247 consensus_15444#3 TCCGCCTCTCCGCCTCCTCCTCCAGATTCGCCCGGGCCAGCAGCTTCGTCGCCCGCGCCG 254 consensus_15444#1 --GGAGTACTTCGCGGCCAT-CTAAGCAC----ACATATGCATATGCCTGGTGATGGATG 402 consensus_15444#2 ATGGAGTACTTCGCGGCCATTCTAAGCACCACCACTATTGCATATGCCTGGTGATGGATG 267 * * * * * * * *** * * * * * * consensus_15444#0 GCGGTGTGGACGATGCGCCGCTGGTCGGGAACAAGGCGCCCGACTTCGATGCGGAGGCAG 307 consensus_15444#3 GGGGTGTGGACGATGCGCCGCTGGTCGGGAACAANGCGCCCGACTTCGATGCGGANGCAG 314 consensus_15444#1 TA-GGGAGTT-TTTTTGCT-TTCGC-GAGAGCCA-TTGCGTTTCGTCTCCA-AAGTGTAG 456 consensus_15444#2 TATGGGAGTTCTNTTTGCT-TTCGCCGAGAGCCACTTGCGTTTCGTCTCCACAAGTGTAG 326 * * * * ** * * * ** * * ** * ** * ** consensus_15444#0 TCTTCGACCAGGAGTTCATCAACGTGAAGCTGTCCGACTA---CATCGGGAAGAAGTACG 364 consensus_15444#3 TCTTCGACCAAGAATTCATCAACGTGAANCTGTCCGACTA---CATCGGGAAGAAGTACG 371 consensus_15444#1 T-----ACCGTGTGCTCGTCTGATCGGATTTT-GTTACTTGTTCGCCNCCAGCTGTTACT 510 consensus_15444#2 T-----ACCGTGTGCTCGTCTGATCGGATTTTTGTTACTTGTTCGCCACCAGCTGTTACT 381 * *** * ** ** * * * *** * * * *** consensus_15444#0 TCATTCTCTTCTTCTACCCGTTGGACTTCACCTTCGTCTGCCCGACCGAGATTACCGCTT 424 consensus_15444#3 TCATTCTCTT-------------------------------------------------- 381 consensus_15444#1 TTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTAAAAAAAAAAAAAA 570 consensus_15444#2 TTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTGTTATACATGTATACATGTTAGTGC 441 * *** ** consensus_15444#0 TCAGTGACAGATACGATGAGTTCGAGAAGTTGAACACTGAGATCCTCGGTGTTTCAATTG 484 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 AAAAAAAAAAAAAAAAAAAAAA-------------------------------------- 592 consensus_15444#2 GTTTCAAAAAAAAAA--------------------------------------------- 456 consensus_15444#0 ACAGTGTGTTCTCCCATCTTGCATGGGTGCAGACAGACAGGAAATCTGGTGGGCTTGGTG 544 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 ATCTGAAATACCCATTGATTTCAGATGTTACTAAATCAATTTCGAAGTCCTTTGGTGTCT 604 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TGATCCCTGACCAGGGAATTGCTCTGAGAGGACTTTTCATCATTGACAAGGAGGGAGTGA 664 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TTCAGCACTCTACCATTAACAACCTTGCCATTGGACGCAGTGTAGATGAGACCATGAGGA 724 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 CCCTTCAGGCGTTGCAGTACGTCCAGGACAACCCGGACGAGGTGTGCCCGGCCGGATGGA 784 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 AGCCCGGTGACAAGTCGATGAAGCCTGACCCCAAGGGAAGCAAGGAGTACTTCGCGGCCA 844 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TCTAAGCACACATATGCATATGCCTGGTGATGGATGTAGGGAGTTTTTTTGCTTTCGCGA 904 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 GAGCCATTGCGTTTCGTCTCCAAAGTGTAGTACCGTGTGCTCGTCTGATCGGATTTTGTT 964 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 ACTTGTTCGCCACCAGCTGTTACTTTGTTCCCTAACAAATAAGGCTTTGTTTTGGTCGTG 1024 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TTATACATGTATACATGTTAGTGCGTTTCAAGATCGCTTCTGTTTTGGGTTAAAAAAAAA 1084 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1144 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 AAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTTACCTTTTTTTTAACACAAG 1204 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 GGCCAATTTCCGGCCCTTTAATTTAATTTCCCCTTATAGGAATTCTTTTAAAAATCCCTT 1264 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 GCCCGTCTTTTAAAAACTTGGTAATTGAAAAACCCTTGGTTTTCCCAATTTAATTCCCTT 1324 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TAAAAAAAATCCCCTTTTCCCCATTTGGCTTATTACCAAAAAGCCCCCCCCCAATCCCCT 1384 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 TTCCAAAAATTTGCCAACCTTATACTTCCGGAATTTAAGGTTTTACCCTTAAAAAAAAAA 1444 consensus_15444#3 ------------------------------------------------------------ consensus_15444#1 ------------------------------------------------------------ consensus_15444#2 ------------------------------------------------------------ consensus_15444#0 AACCCTTTTTCCCTTTTTTGGGGTTTCCCAAATTATTTTTTTTACCC 1491 consensus_15444#3 ----------------------------------------------- consensus_15444#1 ----------------------------------------------- consensus_15444#2 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||