These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1217 fasta sequence [TCTCGCTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCGCCGGCGGCGCCGGG-GCCGAAGAGGTTCACGGCGCGGCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCCCACCTGTCGCCGGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT-CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC-TTTT-TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAATTTCTGGTCCTTAATACATACCTCTAATTAATAAAACTTTGAGTTTGGTTTCTCCTAAAAAA] [+] EMBL AK058638 [TCTCGCTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGGGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCGCCGGCGGCGCCGGG GCCGAAGAGGTTCACGGCGCGGCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCCCACCTGTCGCCGGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGGGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAATTTCTGGTCCTTAATACATACCTCTAATTAATAAAACTTTGAGTTTGGTTTCTCCT ] [+] EMBL OSC672 [ CTTCGNCTTCTCCTCTCCTTGTCCTTGANCTCCCCTGCTCCGNCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTNGCTGCTNTTCAACGGGAAGNGGTTCACGGTNTTCGACGNCAAGGGGAACCTCGTNTTCCGCGTC ] [+] EMBL AU063802 [ CTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAG GAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGNTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTtccgc ] [+] EMBL CB659394 [ TCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCGCCGGCGGCGCCGGG GCCGAAGAGGTTCACGGCGCGGCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCCCACCTGTCGCCGGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCNAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCT ] [+] EMBL CB681922 [ CCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCGCCGGCGGCGCCGGG GCCGAAGAGGTTCACGGCGCGGCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCCCACCTGTCGCCGGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCTAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCGAAGCT CCCTGCACCA ] [+] EMBL C72524 [ CCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAGGAGGAGAAGGGGGAGGCGGTGTCGCTGACGGTGTGGCGGCGGTCGCTGCTGTTCAACGGGAAGGGGTTCACGGTGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGAC GNCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCG CGGCGGCGCCGGGNGCCGAAGAGGTTCACGGCG ] [+] EMBL CA755273 [ GGGAAGGGGTTCACGGCGTTCGACGGCAAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGGTCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCACCATCCGCCGCAAGAAGCTGAGCTTCGCGGACGAGTGGCTCATCTACGACGGCGACGCGGCGTCGCCGGCGGCGCCGGG GCCGAAGAGGTTCACGGCGCGGCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCCCACCTGTCGCCGGAGCGCGCGTCGTCGTCCGCCGTCGCCGGAGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCACCGGCGTCGCGTGTCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGACCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGACGGCGCTCGCCATGTACGTCGTCATCCTCCTCGACCAGATGCACGTCTCGTTGAAGGTTCGCGCGCCCTCCCCCTGACGCTGCACGAATCTTCAAGGT CCCTGCAGCACAGCTGTGTGGCA ] [-] EMBL CB679652 [ GCCGGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACCTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAAAGGGTGGTCCTTAATACATACCTCTAATTAATAAA ] [-] EMBL CB659395 [ GGCGCGCGCGTCGTCGTCCGCCGCCGCCGGCGGCGGATCGGCGACCGCGCCGAGCGGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAATTTCTGGTCCTTAATACATACCTCTAATTAATAAAACTTTGAGTTTGGTTTCTCC ] [-] EMBL CB679281 [ GGCGCCTGCCGGTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGCCGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAATTTTTGGTCCTTAATACATCCCTCTAATGAATAAAACTTTGAGTTTG ] [-] EMBL CB679651 [ CGGCGAGCAGCGGCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGGACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTAGTCATCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGTTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTGGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTATATAAGTGTCAGGTTTTGGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTCCCTTGGTAGGGCAGATGATCCAAGATTTTGTATGGAGTGTATAT ] [+] EMBL AU182609 [ GCTTCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCT CCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAaa ] [+] EMBL CF196384 [ TCGCGCGCCCTCCCCCTGCCGCTGCACGAATCTCAAAGCTCCCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTCTTTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTA TAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAAAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAA ] [+] EMBL AU162184 [ AACAAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTT TTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAACAAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAaa ] [+] EMBL BI795730 [ ccgcAAAATCTCCTTGTTTCTTGAGAGCTCAAGACACCTCCTCTC TTTTGTTATGCTTCAAGATTAGCAAAGTTATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATGTAGGGGTGTGACGCTTTTAT ATTTTGGGTTCAGGATTTAGGGTTAAGAATCGGACGATGGATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAAC AAACTGTGCATTTAACGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGAGTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCC AAGGAAATTTCTGGTCCTTAATACATACCTCTAATTAATAAAACTTTGAGTTTGGTTTCTCCTAAAAAA] consensusID : consensus_15448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [GAGGCACGCCGCCTTCTGCCGCGCGCTCGGCTGCAGGTCCCCCGCCGCGGCGGAGCGGCTCATCGCGGCGGTGCGGCGGCTGCTCCGCGGCGCCGGCGAGGGCGGCAGGAAGGAGAAGGCCAAGGCCGTGGTGGTGCTGGAGTTCCATGACGCCTGAGACGACAGATCGAAGATCTGTTGCTCTCCCATGGCGCTAGCTATAGCTAGTCCTAGCCTCTCTCTCTTTTAATTTGAATCTCTCTACCTTAATTGCTGCTTAATTTTCCTAGCTTGATTATATTTAGCTCGCAATAATTACGTGCTCAATTTGTACGCAAAATCCTGCAAGTTCTCCAGCTTTGTGTAACTGTGAAGGAATGGGAAACAACATTCTGGAGGACAATGAGAGATTGAGAGCTAAGGTGGAAAAAAGAATTCCATTTTTCTCTCGCTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGCTCCCGCCCGTGGTGGAGGATGAGAATGGGGAGGCGGTGTCCTTGACCGTGTGGCGGCGGTCGCTTGTGTTCACGGGAAGGGTTTCACGGTGGCCGACCGGAAGGGGGAACCATCTGTTCTCGGCGTCAGAGCTACCCCGGGGGGTCGCCCAGGGGAGGTCGTGCTTATGGGAGGCCGACGGGCCGGCCCTTCTTAACATCCGCCGAAGGAAGCTGAACTTCCCGGACCATGGGGTTATTTACCAACGGGGACGCGGGGTTTCCCGGGGCGCCGGGGCCAAAAAGGTTACGGGGCGGGCCCAATTAGGCGGCGCCCAACCAAGTTCTTTGCCCACTTTTGACGGGCCCGGCGTTTTATTCCACGCCCCCGCGGGGGATAAGATAC] [+] EMBL BE040560 [GAGGCACGCCGCCTTCTGCCGCGCGCTCGGCTGCAGGTCCCCCGCCGCGGCGGAGCGGCTCATCGCGGCGGTGCGGCGGCTGCTCCGCGGCGCCGGCGAGGGCGGCAGGAAGGAGAAGGCCAAGGCCGTGGTGGTGCTGGAGTTCCATGACGCCTGAGACGACAGATCGAAGATCTGTTGCTCTCCCATGGCGCTAGCTATAGCTAGTCCTAGCCTCTCTCTCTTTTAATTTGAATCTCTCTACCTTAATTGCTGCTTAATTTTCCTAGCTTGATTATATTTAGCTCGCAATAATTACGTGCTCAATTTGTACGCAAAATCCTGCAAGTTCTCCAGCTTTGTGTAACTGTGAAGGAATGGGAAACAACATTCTGGAGGACAATGAGAGATTGAGAGCTAAGGTGGAAAAAAGAATTCCATTTTTCTCTCGCTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAGCGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGCTCCCGCCCGTGGTGGAGGATGAGAATGGGGAGGCGGTGTCCTTGACCGTGTGGCGGCGGTCGCTTGTGTTCACGGGAAGGGTTTCACGGTGGCCGACCGGAAGGGGGAACCATCTGTTCTCGGCGTCAGAGCTACCCCGGGGGGTCGCCCAGGGGAGGTCGTGCTTATGGGAGGCCGACGGGCCGGCCCTTCTTAACATCCGCCGAAGGAAGCTGAACTTCCCGGACCATGGGGTTATTTACCAACGGGGACGCGGGGTTTCCCGGGGCGCCGGGGCCAAAAAGGTTACGGGGCGGGCCCAATTAGGCGGCGCCCAACCAAGTTCTTTGCCCACTTTTGACGGGCCCGGCGTTTTATTCCACGCCCCCGCGGGGGATAAGATAC] [+] EMBL AK108326 [GAGGCACGCCGCTTTCTGCCGCGCGCTCGGCTGCAGGTCCCCCGCCGCGGCGGAGCGGCTCATCGCGGCGGTGCGGCGGCTGCTCCGCGGCGCCGGCGAGGGCGGCAGGAAGGAGAAGGCCAAGGCCGTGGTGGTGCTGGAGTTCCATGACGCCTGAGACGACAGATCGAAGATCTGTTGCTCTCCCATGGCGCTAGCTATAGCTAGTCCTAGCCTCTTTCTCTTTTAATTTGAATCTCTCTACCTTAATTGCTGCTTAATTTTCCTAGCTTGATTATATTTAGCTCGCAATAATTACGTGCTCAATTTGTACGCAAAATCCTGCAAGTTCTCCAGCTTTGTGTAACTGTGAAGGAATGGGAAACAACATTCTGGAGGACAATGAGAGATTGAGAGCTAAGGTGGAAA ] consensusID : consensus_15448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [TGGGCTGCGAGTATCGTGGGGGGAGTCGGGTGCTAGCACCACGAGTGGGCGTGGGCCGCGGGGTGGGGTGGTAGGGGTGGCGAGGGAGACGATGGCTGGGGCGGTGTGATGGGTGTGTGCTGGCTGGGACTGCGGGGGGTGGGGGTGGGGCGGCTGGGTGGGGCTGCGGGTGTCGGGGGTCCTTGTCGGGCGGGTTGTGTGCGGTTGTGGTGATGGGGATGCAGATTGGGTTTTGTTTTTGTGGGGAAATGGCGTGGTCGTTGCGTGTTCATCGGAGGCTCCTTTTATGAGGGGCCGCGGCGGCTTGAGGGTTGCGGGTGCGGGTGTGCGGGTTAAGTATCTCCCCGCAGGATGTGTCTCCAGGGGTGTTCTATAATCCCCGGGTTTTCCGGTTTTTAAGTTAGCGAAACCAAATCTGTGCACTTAAGGTTGGTGCTTGGGTGGGCCAGATGATCCAAGATTTTTTATGGAGTGTATATGACCAGGTAAATCCCAGCCCCTTTTTGTTTCTTTCCCAAAGGAATTTTCTGGTCCTTAATACATCCCTTTAATTAATAAACCTTTGAGTTTGGTTTCTCCAAAAAAAGAAAAAAAAAAAAAAAAA] [-] EMBL CA754008 [TGGGCTGCGAGTATCGTGGGGGGAGTCGGGTGCTAGCACCACGAGTGGGCGTGGGCCGCGGGGTGGGGTGGTAGGGGTGGCGAGGGAGACGATGGCTGGGGCGGTGTGATGGGTGTGTGCTGGCTGGGACTGCGGGGGGTGGGGGTGGGGCGGCTGGGTGGGGCTGCGGGTGTCGGGGGTCCTTGTCGGGCGGGTTGTGTGCGGTTGTGGTGATGGGGATGCAGATTGGGTTTTGTTTTTGTGGGGAAATGGCGTGGTCGTTGCGTGTTCATCGGAGGCTCCTTTTATGAGGGGCCGCGGCGGCTTGAGGGTTGCGGGTGCGGGTGTGCGGGTTAAGTATCTCCCCGCAGGATGTGTCTCCAGGGGTGTTCTATAATCCCCGGGTTTTCCGGTTTTTAAGTTAGCGAAACCAAATCTGTGCACTTAAGGTTGGTGCTTGGGTGGGCCAGATGATCCAAGATTTTTTATGGAGTGTATATGACCAGGTAAATCCCAGCCCCTTTTTGTTTCTTTCCCAAAGGAATTTTCTGGTCCTTAATACATCCCTTTAATTAATAAACCTTTGAGTTTGGTTTCTCCAAAAAAAGAAAAAAAAAAAAAAAAA] consensusID : consensus_15448#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 565 fasta sequence [AAATGGGATTGAGCAGCATCCCTAAAGAAAAATGGAATTCTTTTTTCCACCTTAGCTCTCAATCTCTCATTGTCCTCCAGAATGTTGTTTCCCATTCCTTCACAGATACACAAAGCTGGAGAACTTGCAGGATTTTGCGTACAAATTGAGCACGAAATTATTGCGAGCTAA-ATATAATCAAGCTAAGAAAATTAAGCAGCAATTAAGGTAGAGAGATTCAAATTAAAAGAGAAAGAGGCTAGGACTAGCTATAGCTAGCGCCATGGGAGAGCAACAGATCTTCGATCTGTC--GTCTCAGGCGTCATGGAACTCCAGCACCACCACGGCCTTGGCCTTCTCCTTCCTGCCGCCCTCGCCGGCGCCGCGGAGCAGCCGCCGCACCGCCGCGATGAGCCGCTCCGCCGCGGCGGGGGACCTGCAGCCGAGCGCGCGGCAGAAGGCGGCGTGCCTCGCGATCGCCGCTCCACCTCCACCACCACCGACCCGTCGTCCCCGGCGCCGCCCCGGAGCTGGGAGCTCCTCCCCCACGCTCGCGACAGGCGGACAGCACCGCCCGCGTAACGCG] [+] EMBL CB680523 [AAATGGGATTGAGCAGCATCCCTAAAGAAAAATGGAATTCTTTTTTCCACCTTAGCTCTCAATCTCTCATTGTCCTCCAGAATGTTGTTTCCCATTCCTTCACAGATACACAAAGCTGGAGAACTTGCAGGATTTTGCGTACAAATTGAGCACGAAATTATTGCGAGCTAA ATATAATCAAGCTAAGAAAATTAAGCAGCAATTAAGGGAGAGAGATTCAAATTAAAAGAGAAAGAGGCTAGGACTAGCTATAGCTAGCGCCATGGGAGAGCAACAGATCTTCCATCTGTC GTCTCAAGCGTCATGGAACTCCAGCACCACCACGGCCTTGGCCTTCTCCTTCCTGCCGCCCTCGCCGGCGCCGCGGAGCAGCCGCCGCACCGCCACGATGAGCCGCTCCGCCGCGGCGGGGGACCTGCAGCCGAGCGCGCGGCAGAAGGCGGCGTGCCT ] [-] EMBL BI805428 [ tttttttTTTTGCGTACAAATTGAGCACGTAATTATTGCGAGGTAANGTATAATCAAGCTAGGAAAATTAAGCAG AATTAAGGTAGAGAGATTCAAATTAAAAGAGAAAGAGGCTAGGACTAGCTATAGCTAGCGCCATGGGAGAGCAACAGATCTTCGATCTGTCGNGNGTCAGGNGTCATGGAACTCCAGCACCACCACGGCCTTGGCCTTCTCCTTCCTGCCGCCCTCGCCGGCGCCGCGGAGCAGCCGCCGCACCGCCGCGATGAGCCGCTCCGCCG GGCGGGGGACCTGCAGCCGAGCGCGCGGCAGAAGGCGGAGTGCCTCGCGATCGCCGCTCCACCTCCACCACCACCGACCCGTCGTCCCCGGCGCCGCCCCGGAGCTGGGAGCTCCTCCCCCACGCTCGCGACAGGCGGACAGCACCGCCCGCGTAACGCG] [-] EMBL CB680522 [ CAATTAAGGTAGAGAGATTCACATTAAAAGAGAAAGAGGCTAGGACTAGCTATAGCTAGCGCCATGGGAGAGCAACAGATCTTCGATCTGTC GTCTCAGGCGTCATGGAACTCCAGCACCACCACGGCCTTGGCCTTCTCCTTCCTGCCGCCCTCGCCGGCGCCGCGGAGCAGCCGCCGCACCGCCGCGATGAGCCGCTCCGCCGCGGCGGGGGACCTGCAGCCGAGCGCGCGGCAGAAGGCGGCGTGCCTC ] consensusID : consensus_15448#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 202 fasta sequence [CGGTGTTCGACGGCCAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGTGTCCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCAACATCCGCGCAAGAAAGCTTGACGCTTCGCGGACGAAGTGGCGTCATCTACGAGGCGACGCGGGTCCGCCTGGCTGGCGCCCGGCGCCCGAAGAG] [-] EMBL BI811153 [CGGTGTTCGACGGCCAGGGGAACCTCGTGTTCCGCGTCGAGAGCTACGCCGGGGGGTCGCCGAGGGAGTGTCCGTGCTCATGGACGCCGACGGCCGCGCCCTCCTCAACATCCGCGCAAGAAAGCTTGACGCTTCGCGGACGAAGTGGCGTCATCTACGAGGCGACGCGGGTCCGCCTGGCTGGCGCCCGGCGCCCGAAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15448#0 TCTCGCTTCGCCTTCTCCTCTCCTTGTCCTTGACCTCCCCTGCTCCGCCGCGCCGCAGAG 60 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 --GAGGCACGCCGCCTTCTG-CCGCGCGCTCGGCTGCAGGTCCCCCGCCGCG--GCGGAG 55 consensus_15448#2 -----------------------------TGGGCTGCGAGT-----ATCGTGGGGGGAGT 26 consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 CGAGCGGCCATGACCAAGGTGCACCCCAACGTCGCGGTGGTGGCGCCGGCGGTGGTGGAG 120 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 CGGCTCATCGCGGCGGTGCGGCGGCT--GCTCCGCGGCGCCGGCGAGGGCGGCAG-GAAG 112 consensus_15448#2 CGGGTGCTAGCACCACGAGTGGGCGTGGGCCGCGGGGTGG-GGTGGTAGGGGTGGCGAGG 85 consensus_15448#3 ------------------------------------AAATGGGATTGAGCAGCATCCCTA 24 consensus_15448#0 GAGGAGAAGGGGGAGGCGGTGTCGCTGACGGT--GTGGCGGCGGTCGCTGCTGTTCAACG 178 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 GAGAAGGCCAAGGCCGTGGTGGTGCTGGAGTTCCATGACGCCTGAGACGACAGATCGAAG 172 consensus_15448#2 GAGACGATGGCTGGGGCGGTGTGATGGGTGT---GTGCTGGCTGGGACTGCGGGGGGTGG 142 consensus_15448#3 AAGAAAAATGGAATTCTTTTTTCCACCTTAGCTCTCAATCTCTCATTGTCCTCCAGAATG 84 consensus_15448#0 GGAAGGGGTTC----ACGGTGTTCG--ACGGCAAGG---GGAACCTCGTGTTCCGCGTCG 229 consensus_15448#4 ----------------CGGTGTTCG--ACGGCCAGG---GGAACCTCGTGTTCCGCGTCG 39 consensus_15448#1 ATCTGTTGCTCTCCCATGGCGCTAGCTATAGCTAGTCCTAGCCTCTCTCTCTTTTAATTT 232 consensus_15448#2 GGGTGGGGCGGCTGGGTGGGGCTGCGGGTGTCGGGGGTCCTTGTCGGGCGGGTTGTGTGC 202 consensus_15448#3 TTGTTTCCCATTCCTTCACAGATACACAAAGCTGGAG--AACTTGCAGGATTTTGCGTAC 142 * * * * * consensus_15448#0 AGAGCTA-CGCCGGGGGGTCGCCGAGGGAGG--TCGTGCTCA--TGGACGCCGACGGCCG 284 consensus_15448#4 AGAGCTA-CGCCGGGGGGTCGCCGAGGGAGTGTCCGTGCTCA--TGGACGCCGACGGCCG 96 consensus_15448#1 GAATCTC-TCTACCTTAATTGCTGCTTAATTTTCCTAGCTTGATTATATTTAGCTCGCAA 291 consensus_15448#2 GGTTGTG--GTGATGGGGATGCAGATTGGGT---TTTGTTTT--TGTGGGGAAATGGCGT 255 consensus_15448#3 AAATTGAGCACGAAATTATTGCGAGCTAAATATAATCAAGCTAAGAAAATTAAGCAGCAA 202 ** ** consensus_15448#0 CGCCCTCCT-CACCATCCGCCGCAAGAAGCTGA--GCTTCGCGGACGA-GTGGC-TCATC 339 consensus_15448#4 CGCCCTCCT-CAACATCCGCGCAAGAAAGCTTGACGCTTCGCGGACGAAGTGGCGTCATC 155 consensus_15448#1 TAATTACGTGCTCAATTTGTACGCAAAATCCTGCAAGTTCTCCAGCTTTGTGTAACTGTG 351 consensus_15448#2 GGTCGTTGC---GTGTTCATCGGAGGCTCCTT-----TTATGAGGGGCCGCGGCGGCTTG 307 consensus_15448#3 TTAAGGTAG-AGAGATTCAAATTAAAAGAGAAAGAGGCTAGGACTAGCTATAGCTAGCGC 261 * * consensus_15448#0 TACGACGGCGACGCGGCGTCGCCGG--CGGCGCCGGGG--CCGAAGAGGTTCACGGCGCG 395 consensus_15448#4 TACGA-GGCGACGCGGGTCCGCCTGGCTGGCGCCCGGCGCCCGAAGAG------------ 202 consensus_15448#1 AAGGAATGGGAAACAACATT--CTGGAGGACAATGAGAGATTGA-GAGCTAAGGTGGAAA 408 consensus_15448#2 AGGGTTGCGGGTGCGGGTGTGCGGGTTAAGTATCTC---CCCGCAGGATGTGTCTCCAGG 364 consensus_15448#3 CATGGGAGAGCAACAGATCT-TCGATCTGTCGTCTCAGGCGTCATGGAACTCCAGCACCA 320 * * * * consensus_15448#0 GCGCCACGTCAGCCTGCGCCCCACCAAGTCCCTCGCC--CACCTGTCGCCGGCGCGCGCG 453 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 AAAGAATTCCATTTTTCTCTCGCTTCGCCTTCTCCTC--TCCTTGTCCTTGACCTCCCCT 466 consensus_15448#2 GGTGTTCTATAATCCCCGGGTTTTCCGGTTTTTAAGT--TAGCGAAACCAAATCTGTGCA 422 consensus_15448#3 CCACGGCCTTGGCCTTCTCCTTCCTGCCGCCCTCGCCGGCGCCGCGGAGCAGCCGCCGCA 380 consensus_15448#0 TCGTCGTCCGCCGCCGCCGGCGG----CGGATCGGCGACCGCGCCGAGCGGCGCCTGCCG 509 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 GCTCCGCC--GCGCCGCAGAGCG----AGCGGCCATGACCAAGGTGCACCCCAACGTCGC 520 consensus_15448#2 CTTAAGGTTGGTGCTTGGGTGGGCCAGATGATCCAAGATTTTTTATGGAGTGTATATGAC 482 consensus_15448#3 CCGCCGCGATGAGCCGCTCCGCCGCGGCGGGGGACCTGCAGCCGAGCGCG-CGGCAGAAG 439 consensus_15448#0 GTACGACGTGGAGGGCTCGTACGCCGCCCGCTGCCTCGACGTGTTCGCCTCCGCCAGCGC 569 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 GGTGGTGGCGCCGGCGGTGGTGGCTCCCGCCCGTGGTGGAGGATGAGAATGGGGAGGCGG 580 consensus_15448#2 CAGGTAAATCCCAGCCCCTTTTTGTTTCTTTCCCAAAGGAATTTTCTGGTCCTTAATACA 542 consensus_15448#3 GCGGCGTGCCTCGCGATCGCCGCTCCACCTCCACCACCACCGACCCGTCGTCCCCGGCGC 499 consensus_15448#0 CGGCGAGCAGCG-GCGGCGCGTGGCGGCGGTGTGCAGTAAGGAGGCCGCCGTGGGCCCGG 628 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 TGTCCTTGACCGTGTGGCGGCGGTCGCTTGTGTTCACGGGAAGGGTTTCACGGTGGCCGA 640 consensus_15448#2 TCCCTTTAATTAATAAACCTTTGAGTTTGGTTTCTCCAAAAAAAGAAAAAAAAAAAAAAA 602 consensus_15448#3 CGCCCCGGAGCTGGGAGCTCCTCCCCCACGCTCGCGACAGGCGGACAGCACCGCCCGCGT 559 consensus_15448#0 ACGTGTTCCGGCTGGTGGTGGAGCCGGGCTTCGAGCCGGCGCTCGCCATGGCCGTCGTCA 688 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 CCG------GAAGGGGGAACCATCTGTTCTCGGCGTCAGAGCTACCCCGGGGGGTCGCC- 693 consensus_15448#2 AA---------------------------------------------------------- 604 consensus_15448#3 AACGCG------------------------------------------------------ 565 consensus_15448#0 TCCTCCTCGACCAGATGCACGCCTCGTGAAAGCTTCGCGCGCCCTCCCCCTGCCGCTGCA 748 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 -CAGGGGAGGTCGTGCTTATGGGAGGCCGACGGGCCG-GCCCTTCTTAACATCCGCCGAA 751 consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 CGAATCTCAAAGCTCCCTGCACCACAGCTGTGTGCCACAAGGAACAAAAATCTCCTTGTT 808 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 GGAAGCTGAACTTCCCGGACCATGGGGTTATTTACCAACGGGGACGCGGGGTTTCCCGGG 811 consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 TCTTGAGAGCTCAAGACACCTCCT------CTCTTTTTTATGCTTCAAGATTAGCAAAGT 862 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 GCGCCGGGGCCAAAAAGGTTACGGGGCGGGCCCAATTAGGCGGCGCCCAACCAAGTTCTT 871 consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 TATGAATCACTCATGAGCTGAGATGATCAATCTGCAGCTATAGCAGAAGCATTTTTTATG 922 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 TGCCCACTTTTGACGGGCCCGGCGTTTTATTCCACGCCCCCGCGGGGGATAAGATAC--- 928 consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 TAGGGGTGTGACGCTTTTATGGTTTCGGGTTCAGGATTTAGGGTTAAGAATCGGACGATG 982 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 ------------------------------------------------------------ consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 GATGGGTATCCAGAGGTGTTCTATAAGTGCCAGGTTTTCGGATTTTAAGTTAGTGAAAAC 1042 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 ------------------------------------------------------------ consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 AAAACTGTGCACTTAAGGTTGGTACTTTGGTAGGGCAGATGATCCAAGATCTTGTATGGA 1102 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 ------------------------------------------------------------ consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 GTGTATATGAACATGTAAATCCCAGCCCCTTTTTGTTTCCTTCCCAAAGGAAATTTCTGG 1162 consensus_15448#4 ------------------------------------------------------------ consensus_15448#1 ------------------------------------------------------------ consensus_15448#2 ------------------------------------------------------------ consensus_15448#3 ------------------------------------------------------------ consensus_15448#0 TCCTTAATACATACCTCTAATTAATAAAACTTTGAGTTTGGTTTCTCCTAAAAAA 1217 consensus_15448#4 ------------------------------------------------------- consensus_15448#1 ------------------------------------------------------- consensus_15448#2 ------------------------------------------------------- consensus_15448#3 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||