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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15458#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1208 fasta sequence
[CCCCCACGCACTCACGCGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC-AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA-GGTCAACTTATATGCT-GGACAAGGACAA-TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT-GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG-ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG-CAACATGTTATGGGCTTTGTGC-ACGTTTAGTACATCGTCGGATA-CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC-AAATT-GCTCATGTGAAAAATGTA-CCTACCAGAGACC-GTGATGAAATCTAGAGACTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTCCCCTAAAAAAAAAAAAAAAAA]
[+] EMBL AK102617 [CCCCCACGCACTCACGCGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTA ]
[+] EMBL AK061053 [ CCCCACGCACTCACGCGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAG ]
[+] EMBL OSC792 [ ACTCACGNGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCNTGGTGCTGAGCTGGGTGCGGAGGNAGCCGTCCAAGGTCAAGGCGTTCCTCGNCGTGGTCGCC ]
[+] EMBL CB647359 [ ACGCGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTANCTGCGCAC ]
[+] EMBL BP184384 [ ACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCG CCACGCGCTCGGCCTCGGAGTCCTCATCTACAAAGCTCACCAAG ]
[+] EMBL BP184984 [ acgagGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGC ]
[+] EMBL AK060043 [ CACAACGCGCTCGCCTCGCCTCGCCCCGATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAGAGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGCTGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGATGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTA ]
[+] EMBL C28868 [ ATCCGATTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCCGAGGCCGCCCACGCGCTCGGCCTNGGAGTCCTCATCTAC AAGCTCACCAAGGAGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGGTCAACTTATATGCTGGGACAAGGACAATTTTTGCATTGTACTACGTGGTGTTACCTTGTGCTTGGCTAG TCTCCTGGGTTAATCCTT AACATGGGAT ACAT ATC ACAGGA ]
[-] EMBL CB647360 [ CAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC ]
[+] EMBL BP184385 [ TTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGA GGTCAACTTATATGCT GGACAAGGACAA TTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTTTAACTACTTAGCTTTTAaaaaaaaa ]
[-] EMBL CA762647 [ TTATTTGCT GGACAAGGACAA TTCTGCATTGTACTACGGGGTGTT CCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCACCATCGCATACCATCATCACCAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTTTTAGCTGCGCACACTGGGTCCTTCAGGTTCTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTCCCCTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762648 [ TTATTTGCT GGACAAGGACAA TTCTGCATTGTACTACGGGGTGTT CCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCACCATCGCATACCATCATCACCAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTTTTAGCTGCGCACACTGGGTCCTTCAGGTTCTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTCCCCTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762649 [ TTATTTGCT GGACAAGGACAA TTCTGCATTGTACTACGGGGTGTT CCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCACCATCGCATACCATCATCACCAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTTTTAGCTGCGCACACTGGGTCCTTCAGGTTCTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTCCCCTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762657 [ TTATTTGCT GGACAAGGACAA TTCTGCATTGTACTACGGGGTGTT CCTTGTGCTGGCCTAGCTCTCCT GGTTCATCCTTCACCATCGCATACCATCATCACCAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTTTTAGCTGCGCACACTGGGTCCTTCAGGTTCTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATT GCTCATGTGAAAAATGTA CCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTTTAACTACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTCCCCTAAAAAAAAAAAAAAAAA]
[+] EMBL CA999949 [ GCTGTTTCAGTGCTGCCACAGTTGCGTTTGAT CCTTACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGGGGGCGGTTGTTGACTGCTCTGGGCTATGGTCTCGGGCCTTCGATGGTGCTTCTCTCTGAAATCATTCAAACGTTCATCCAAGCTGATTTCTGCTACTAGTATGCGAAGAGTG ]
[+] EMBL CA999720 [ CTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAG ATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTG ]
[+] EMBL AU172343 [ ACACAAAGAATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTTCCGTCTGGAGTGGTGTAAAAATGCAGCAGGATG CAACATGTTATGGGCTTTGTGC ACGTTTAGTACATCGTCGGATA CCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTACAAAATT GCTCATGTGAAAAATGTA CCTACCAGAGACCAGTGATGAAATCTAGAGACTAGTTTTTAACTAaaaaaaa ]
[-] EMBL AU225750 [ ccgctAAATGCAGCAGGATGCCAACATGTTATGGGCTTTGTGCAACGTTTAGTACATCGTCGGATACCCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTAC AAATTGGCTCATGTGAAAAATGTACCCTACCAGAGACC GTGATGAAATCTAGAGACTAGTTTagcggc ]
consensusID : consensus_15458#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 805 fasta sequence
[CAGAGGACGAGACAAGGGGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGTCAACTTATATGCTGGACAAGGACAATTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCTGGTTCATCCTTCAACATCGCATAACATCAT-CAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGT-GCTTTTG-GAG-GG-AAC-TTGTCCTTCGAC-TTCCGTCTGGAGTGGTGT-AAAAATGCAGCAGGATGCAACATGCTATGGGCTTTGCGCACGTTT-AGTACATCGTCGGATA-CCAGA-GCCTTG-TTTGCTTGATAA-TTTTTTTCAGGT-AC-AAATTGG-TCATGC-GAA-AAA-GTACCTACCA-AAACCGCGAGGAAATCTAAAGACTAGTTTTTAACTAAAAAAAAAAAAAAAAAA]
[+] EMBL CA766875 [CAGAGGACGAGACAAGGGGAAGACCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGTCAACTTATATGCTGGACAAGGACAATTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCTGGTTCATCCTTCAACATCGCATAACATCAT CAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGT GCTTTTG GAG GG AACTTTGTCCTTCGAC TTCCGTCTGGAGTGGTGT AAAAATGCAGCAGGATGCAACATGCTATGGGCTTTGCGCACGTTT AGTACATCGTCGGATA CCAGA GCCTTG TTTGCTTGATAA TTTTCTT AGGT AC AAATTGG TCATGC GAA AAA GTACCTACCA AAACCGCGAGGAAATCTAAAGA ]
[+] EMBL CB096533 [ CGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGCTGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAGCAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGTCAACTTATATGCTGGACAAGGACAATTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCTGGTTCATCCTTCAACATCGCATAACATCAT CAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTAGCTGCGCACACTGGGTCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGNGCTATGGTCTGTGGCCTTCGATGGTGCTTCTCTCNGAAATCGNTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTGGCTTTTGNCCGNGC AAC TTGTCCTTCGACNTCCCGTCTGGAGTGGCGTCAAAAANGCAGCANGATGCAACATGNTATGGGCTTTGCGCACGTTTAANTNCATCGTCGCATACCCAGANCCCTTGNTTTGCTTGANAACTTTTTTTCAGNTAACAAAATTGGNTCATGCGGAANAAA GTACC ]
[+] EMBL AU094464 [ TGGACAAGGACAATTTTGCATTGTACTACGTGGTGTTNCCTTGTGCTGGCCTAGCTCTCCTGGTTCATCCTTCAACATCGCATAACATCATCCAACAGGATCTCCTGGGCTTTCTGTGTTTATTTGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAACCATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCTTA NTGCGCACACTGGGNCCTTCAGGTTTTGGATACCCGTGGTCGCTTGTTGACTGCTCTGGGCTATGGTCTCTGGCCTTCGATGGTGCTTCTCTCTGAAATCGTTCAGACGTTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGT GTTTTTG GTG GGCAAC TTGTCCTTCGAC TTCCGTCTGGAGTGGTGT AAAAATGCAGCAGGATGCAACATGTTATGGGCTTTGTGCACGTTT AGTACATCGTCGGATA CCAGA GCCTTG TTTGCTTGATAA TTTTTTTCAGTT AC AAATTGC TCATGT GAA AAATGTACCTACCAGAGACCGTGATGAAATCTAGAGACTAGTTTTTAACTAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15458#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 374 fasta sequence
[GGCAGAAAAAAACCCTCCCCGTGTTCTCCGATCGGCGGCGAGGCGAGGCGAGGGCGGCGGAGATGAGGGGGGCGAAGCGGCCGCTCGGCGCGGTGATGGCGTGGGTGCGGCGGCAGCCGCCCAAGGTGAAGGCCTTCCTGGCCGTCGTCACCGGCATGGCCGCGCTCGTCTTCATCCGGTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCGGAGGCCGCGCACGCGCTCGGCATCGCCGTGCTCATCTACAAGCTCACCAAGGAGAAGACCTGCGCCGGTTCGCCCCCCCCTCTCGGCTCACGTGTACGGTGTTGCCAGTTCCGTCGCGCGCGCGTGCGCGCGCGCGTCGATCCGTCGAGATCGCCG]
[+] EMBL CB639876 [GGCAGAAAAAAACCCTCCCCGTGTTCTCCGATCGGCGGCGAGGCGAGGCGAGGGCGGCGGAGATGAGGGGGGCGAAGCGGCCGCTCGGCGCGGTGATGGCGTGGGTGCGGCGGCAGCCGCCCAAGGTGAAGGCCTTCCTGGCCGTCGTCACCGGCATGGCCGCGCTCGTCTTCATCCGGTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCGCGGAGGCCGCGCACGCGCTCGGCATCGCCGTGCTCATCTACAAGCTCACCAAGGAGAAGACCTGCGCCGGTTCGCCCCCCCCTCTCGGCTCACGTGTACGGTGTTGCCAGTTCCGTCGCGCGCGCGTGCGCGCGCGCGTCGATCCGTCGAGATCGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15458#0 CCCCCACGCACTCACGCGCACTGCACGCCGCAACACAACGCGCTCGCCTCGCCTCGCCCC 60
consensus_15458#1 ------------------------------------------------------------
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 GATCGGTGGTGGTGCTCGCCGTCGCCGGGCGGCGCTAGGGTGGCCGGAGAGGCTCCGGAG 120
consensus_15458#1 ------------------------------------------------------------
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 AGTAGGAGGAGGAGGAGGAGCCGGAGATGAGGGGGTCGAGGAGGCCGGTGGCCGTGGTGC 180
consensus_15458#1 ------------------------------------------------------------
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 TGAGCTGGGTGCGGAGGCAGCCGCCCAAGGTCAAGGCGTTCCTCGCCGTGGTCGCCGGGA 240
consensus_15458#1 ------------------------------------------------------------
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 TGGCCGCGCTCGTCTTCATCCGCTTCATCGTCCACGACCACGACAACCTCTTCGTCGCCG 300
consensus_15458#1 ------------------------------------------------------------
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 CCGAGGCCGCCCACGCGCTCGGCCTCGGAGTCCTCATCTACAAGCTCACCAAGGAGAAGA 360
consensus_15458#1 -------------------------------------CAGAGGACGAGACAAGGGGAAGA 23
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 CCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGC 420
consensus_15458#1 CCTGCGCCGGACTCTCACTCAAGTCTCAGGATTTAACAGCACTATTTCTGGCTGTTAGGC 83
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 TGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAG 480
consensus_15458#1 TGTACTGCAGTTTTGTTATGGAGTATGACATCCATACCATACTTGATACAGCTACACTAG 143
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 CAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGTCAACTTATATGCTGG 540
consensus_15458#1 CAGCTACTCTCTTTGTCATCTACATGATTCGGTTCAAACTGAGGTCAACTTATATGCTGG 203
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 ACAAGGACAATTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCTGG 600
consensus_15458#1 ACAAGGACAATTTTGCATTGTACTACGTGGTGTTACCTTGTGCTGGCCTAGCTCTCCTGG 263
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 TTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATT 660
consensus_15458#1 TTCATCCTTCAACATCGCATAACATCATCAACAGGATCTCCTGGGCTTTCTGTGTTTATT 323
consensus_15458#2 ------------------------------------------------------GGCAGA 6
*
consensus_15458#0 TGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAAC 720
consensus_15458#1 TGGAAGCTGTTTCAGTGCTGCCACAGTTGCGTTTGATGCAAAACACAAAGATTGTGGAAC 383
consensus_15458#2 AAAAAACCCTCCCCGTGTT-CTCCGATCGGCGGCGAGGCGAGGCG--AGGGCGGCGGAGA 63
** * * * *** * * * * * ** ** * * * * * ***
consensus_15458#0 CATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCT----TAGCTGCGCA 776
consensus_15458#1 CATTTACAGCTCATTATGTGTTTGCATTGGGTGTTGCAAGGTTTCT----TAGCTGCGCA 439
consensus_15458#2 TGAGGGGGGCGAAGCGGCCGCTCGGCGCGGTGATGGCGTGGGTGCGGCGGCAGCCGCCCA 123
** * * * * ** * ** ** * * *** ** **
consensus_15458#0 CACTG--GGTCCTTCAGGTTTTGGATACC--CGTGGTCGCTTGTTGACTGCTCTGGGCTA 832
consensus_15458#1 CACTG--GGTCCTTCAGGTTTTGGATACC--CGTGGTCGCTTGTTGACTGCTCTGGGCTA 495
consensus_15458#2 AGGTGAAGGCCTTCCTGGCCGTCGTCACCGGCATGGCCGCGCTCGTCTTCATCCGGTTCA 183
** ** * * * ** * * *** * *** *** * ** ** *
consensus_15458#0 TGGTCTCTGGCCTTCGATGGTGCTTC----TCTCTGAAATCGTTCAGACGTTCATCCTTG 888
consensus_15458#1 TGGTCTGTGGCCTTCGATGGTGCTTC----TCTCTGAAATCGTTCAGACGTTCATCCTTG 551
consensus_15458#2 TCGTCCACGACCACGACAACCTCTTCGTCGCCGCGGAGGCCGCGCACGCGCTCGGCATCG 243
* *** * ** **** * * ** ** ** ** ** * * *
consensus_15458#0 CTGATTTCTGCTACTA-CTATGTGAAGAGTGTTTTTGGTGGGCAACTTGTCCTTCGACTT 947
consensus_15458#1 CTGATTTCTGCTACTA-CTATGTGAAGAGTGCTTTTGGAGGG-AACTTGTCCTTCGACTT 609
consensus_15458#2 CCGTGCTCATCTACAAGCTCACCAAGGAGAAGACCTGCGCCG--GTTCGCCCCCCC-CTC 300
* * ** **** * ** * *** ** * * * ** * **
consensus_15458#0 CCGTCTGGAGTGGTGTAAAAATGCAGCAGGATGCAACATGTTATGGGCTTTGTGCACGTT 1007
consensus_15458#1 CCGTCTGGAGTGGTGTAAAAATGCAGCAGGATGCAACATGCTATGGGCTTTGCGCACGTT 669
consensus_15458#2 TCGGCTCACGTGT----ACGGTGTTGCCAGTTCCGTCGCGCGCGCGTGCGCGCGCGCGTC 356
** ** *** * ** ** * * * * * * * ** ***
consensus_15458#0 TAGTACATCGTCGGATACCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGTTACAAATTG 1067
consensus_15458#1 TAGTACATCGTCGGATACCAGAGCCTTGTTTGCTTGATAATTTTTTTCAGGTACAAATTG 729
consensus_15458#2 GA-TCCGTCG--AGATCGCCG--------------------------------------- 374
* * * *** *** * *
consensus_15458#0 CTCATGTGAAAAATGTACCTACCAGAGACCGTGATGAAATCTAGAGACTAGTTTTTAACT 1127
consensus_15458#1 GTCATGCGAAAAA-GTACCTACCA-AAACCGCGAGGAAATCTAAAGACTAGTTTTTAACT 787
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 ACCTAGCTTTTATCATACGATCAGTTGTCGCAGGCCCCAATAGATAGACCAAGATAGTTC 1187
consensus_15458#1 AAAAAAAAAAAAAAAAAA------------------------------------------ 805
consensus_15458#2 ------------------------------------------------------------
consensus_15458#0 CCCTAAAAAAAAAAAAAAAAA 1208
consensus_15458#1 ---------------------
consensus_15458#2 ---------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||