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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1501 fasta sequence
[CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG-ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC-TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG-A-TTGT-GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC-TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT-CCGGTGAGGG-TGGGCTCACACATGCCCAG-ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT-CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT-CCTTCTCAATCCTCA-CCCATGGGATACATCTTAAGTTCGT-AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT-CCTTTGCAGCAGTAT-CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT-CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC-AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA-TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C28261 [CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGGCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTNTGGGAAAATTCAGCTACAGTNCCGGTGGCCGAAAGTCTTCAAGC TTTTAGGTCGC ]
[+] EMBL AU062861 [ AACAACGTNGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGTNGACGGNAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC ]
[+] EMBL AK102606 [ GTGAGCTCTCTGAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTTGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGGTCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTT ]
[+] EMBL C26244 [ GCTCTCTGAACCTCCTAGCTTGCCCGAN ACAGAGAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTNTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGNTCAGCCAGGGAGGTCGGTCTTTTGCTGTNCCAGACCTCGATTTCGTCGGCCCTAGTGAC ]
[+] EMBL C26692 [ GAACCTCCTAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTTCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTNAGGTCGCTGGCCATAGTTTNCGGTGGATCTNGATGGCTTCAACCGATTTCCGNGACCTCTTTGTCCAT ]
[+] EMBL AU172315 [ CCTCCTAGCTTGCCCGAGNACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCT ]
[+] EMBL CF331906 [ gagtagaaaAGCTTGCCCGAG ACAGAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTTGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCT ]
[+] EMBL C26270 [ GAGAAAAAGAAAGCCTCATCTCCGGNCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG ATTTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTNTTCAAGCTTTTGAGGTCGCTGGCCATAGTTTNCGGTGGATCTGGATGGCTTCAACCGATTTCCGNGACCTCTTTGTCC ]
[+] EMBL AK063981 [ AGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTT ]
[+] EMBL C28187 [ GTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGNCTG A TTGT GGAAAATTCAGCTACAGTGCCGGTGGNCGAAAGTCTTCAAGC TTTGAGGTCGCTGGNCATAGTTTNCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGANCTCTTTGTCCATCTAATNCT ]
[+] EMBL OSC102511 [ CCTCTATGAAGAGTCCAGTATTACCTTCTTNANATCTGAAATATTGTGGGTGGATCAGCCAGGGAGGTCGGTC TTTNCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTGAA TTGT GGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGC TTTGAGGTCGCTGNCCATAGTTTGCGGTGGATNTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGNCGNGTCGTGTCCCGGTGAGGGTTGGGCTCACACATG NCAGAATCGTCGTCATATTT ]
[+] EMBL CF324003 [ ctcgtgccgGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTAATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGT CCGGTGAGGG TGGGCTCACACATGCCCAG ATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCTGAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTCTCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAATTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGT CCAGCAATTCTGTGCATGCCGGCAACGAAGTCT CCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCT ]
[+] EMBL AU092382 [ ACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCAGCAATTCTGTGCATGCCGGCAACGAAGTCTCCCTTCTCAATCCTCA CCCATGGGATACATCTTAAGTTCGT AAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATT CCTTTGCAGCAGTAT CCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTNGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCNGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA ]
[+] EMBL AU102095 [ TCATTCTTCACCCCATGGGATACATCTTAAGTNCGTAAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCATCTTTTATTTCATTCCCTTTGCAGCAGTATCCCATGTTGAGGTTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAA ]
[+] EMBL OSC31672 [ TGAGCACCGACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCG GNANTCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA ]
[+] EMBL AU172316 [ ATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATNTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA ]
[+] EMBL C97517 [ TGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTT CCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACC AACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCNCGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTA CTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGNGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF331905 [ GGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTTCCCAT GCAATCATTGGTTGAGTCCGGTGAAGCCACCAAACAT TTTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAAAA ]
[+] EMBL AU108238 [ CANCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTC CGGCAATGCCGCGGA TCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAAA ]
consensusID : consensus_15467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 777 fasta sequence
[TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTTGGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTCACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTGTTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACCGACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCATGCTGGCAACGAGGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTCCTTTGCAGCAGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCANGGGATGTTGNTAGTGTTCCTCAGATTTGACGATGACCNTCATGGCAATCATTGGTTGAGTCCGGTGAAGCCA]
[+] EMBL CA766099 [TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGTTTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTTGGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTCACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTGTTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACCGACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCATGCTGGCAACGAGGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTCCTTTGCAGCAGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAGACTTTGGTCGGCANGGGATGTTGNTAGTGTTCCTCAGATTTGACGATGACCNTCATGGCAATCATTGGTTGAGTCCGGTGAAGCCA]
consensusID : consensus_15467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence
[TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCNTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATNAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCANCCAGGGAGGTCGGTCTTTGCTGTNCCANACCTCGATTTCGTCGGCCCTAGCGACGGCTNATTNTGGAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC]
[+] EMBL C25851 [TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCNTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNAGAGGGGTCAGGCTCAATTGCNTCTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGGTCCTCTATNAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCANCCAGGGAGGTCGGTCTTTGCTGTNCCANACCTCGATTTCGTCGGCCCTAGCGACGGCTNATTNTGGAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC]
consensusID : consensus_15467#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence
[AAAAAAAAAAAAAAAANAAAGCTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGATCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA]
[+] EMBL AU222487 [AAAAAAAAAAAAAAAANAAAGCTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGCAATGCCGCGGATCTCCGACGATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAAGTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAACGTTTGTTGTTATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTTTAATATGCAATAAAACTTTATGAGTTTCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15467#0 CAACAAAAAAAAAACAACGTGGGGTGTGAGCTCTCTGAACCTCCTAGCTTGCCCGAGACA 60
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 GAGAGAAAAAGAAAGCCTCATCTCCGGCCCCTCTTCCTCCTTGATTCCGGTGGCTCGCCG 120
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 CCGGTGACGGGAGGGAGAGGGGTCAGGCTCAATTGCGTCTCCTTCGTATAGTAGTTTAGT 180
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 CGGGTTAGTCTCGTAGTCAAGTTAGTCTCGTTCTATGTCCTTCCTGTTCTTTGTCTTTGG 240
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 TCCTCTATGAAGAGTCCAGTATTCCCTTCTTCAGATCTGAAATATTGTGGGTGGATCAGC 300
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 CAGGGAGGTCGGTCTTTGCTGTGCCAGACCTCGATTTCGTCGGCCCTAGCGACGCCTGAT 360
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 TGTGGAAAATTCAGCTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGAGGTCGCTGGC 420
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 CATAGTTTGCGGTGGATCTGGATGGCTTCAACCGATTTCCGCGACCTCTTTGTCCATCTA 480
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 ATCCTTGGCGCTGTGCCCTTCCTCAGCGATGCACTCAGCCGCGTCGTGTCCGGTGAGGGT 540
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 GGGCTCACACATGCCCAGATCGTCGTCATATTTGGTGGGCTTGGAGGTGCAGAGTTAGCT 600
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 GAGCTGTTGGAGCAGTTCGTGCTTGCTGATTCCTCTCATGCGAGCATCCCGAACATTGTC 660
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ------------------------------------------------------------
consensus_15467#0 TCGACAGACAACACCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATGCCTAAATCAA 720
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ----------------------TTCGTCGGCCCTAGCGACGCCTGATTGTGGAAAATTAG 38
consensus_15467#0 TTATCCAAGCAGCAGCACAAGTCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCAT 780
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 CTACAGTGCCGGTGGCCGAAAGTCTTCAAGCTTTGACTCTTTGAGGTCGCTAGCCATAGT 98
consensus_15467#0 CATACAGGCAACCAACAAGCTACACAACAAGGCAAAGCTGGTCCAGCAATTCTGTGCATG 840
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 TTGCGGTGGATCTGGATGGCTTCAACTGATTTTCGCGGCCCCTTTGTCCATCTGATCCTT 158
consensus_15467#0 CCGGCAACGAAGTCTCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGAC 900
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 GGCGCTGTGCCCTTCCTCAGCGATGTGCTCAGCCGCGTCGTGTCCGGTGAGGGTGGGCTC 218
consensus_15467#0 TTTATCATCGCCACCATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGATGCAT 960
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 ACACACGCCCAGATCGTCGTCGTATTTGGTGGGTTTGGAGGTGCAGAGTTAGCTGAGTTG 278
consensus_15467#0 CTTTTATTTCATTCCTTTGCAGCAGTATCCATGTTGAGGTTATCGTTCGGGTTGAGCACC 1020
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 TTGAAGCAGTTCGTGCTTGCTGATTCCTCCCATGCGAGCATCAAGAACATTGTCTCGACC 338
consensus_15467#0 GACTATCTGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATG 1080
consensus_15467#3 ------------------------------------------------------------
consensus_15467#2 ------------------------------------------------------------
consensus_15467#1 GACAGCATCTCCATCAATTTGCTGCTGTGCCTAAATCAATTATCCAAGCAGTGGCACAAG 398
consensus_15467#0 ACTTCCATGGCAATCATTGGTTGAGTCCGGTGAAGCCACCAACATATCTACGACTCAACT 1140
consensus_15467#3 -------------------------------------AAAAAAAAAAAAAAAANAAAGCT 23
consensus_15467#2 ---------------------TGTGNACGTGTGGGNCNANACANAAAGAAAAAGAAAGCN 39
consensus_15467#1 TCATGGGCCAGCAAGGAGCACGCCATGAATCCCCTGCATCATACAGGCAACCAACAAGCT 458
* * * * *
consensus_15467#0 CCA-----AAGCTCAATTAGTGCCAA-ATCC--GTGGA--------GGCAGCCGGAGGGA 1184
consensus_15467#3 CCA-----AAGCTCAATTAGTGCCAA-ATCC--GTGGA--------GGCAGCCGGAGGGA 67
consensus_15467#2 TCATCTCCGGCCCCTCTTCCTCCTTG-ATTCCGGTGGCTCGCCGCCGGTNACGGGAGGNA 98
consensus_15467#1 ACACAACAAGGCAAAGCTGGTCCCGGCAATTCTGTGCAT----GCTGGCAAC--GAGGTC 512
** * * * * * *** ** * ****
consensus_15467#0 TCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGC 1244
consensus_15467#3 TCGCTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGTCGCGGC 127
consensus_15467#2 GAGGGGTCAGGCTCAATTGCNT-CTCCTTCGTATAGTAGTTTAGTCGGGTTAGTCTCG-T 156
consensus_15467#1 TCCTTCTCAATCCTCACCCATGGGATACATCTTAAGTTCGTAAGACTTTATCATCGCCAC 572
** * ** * * * ** *
consensus_15467#0 AATGCCGCGGATCTCCGACG-ATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAA 1303
consensus_15467#3 AATGCCGCGGATCTCCGACG-ATTGTATTCACTACTACTGCTGTATCAGATGATCTGGAA 186
consensus_15467#2 AGTCAAGTTAGTCTCGTTCT-AT-GTCCTTCCTGTTCTT--TGTCTTTGGTCCTCTATNA 212
consensus_15467#1 CATCTAGCTTCTCTAAAGCTTAAGGTCAGCTGGGTTTTGGGTGCATCTTCCATTTCATTC 632
* * *** * * ** * ** * *
consensus_15467#0 GTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAA--CGTTTGTTGT 1361
consensus_15467#3 GTTTGCTTCCATCATTCAATCATTACCTTTCAGGAAGATGGTCCTTAA--CGTTTGTTGT 244
consensus_15467#2 A---GAGTCCAGTATTCCCTTCTT-CAGATCTGAAATATTGTGGGTGGATCANCCAGGGA 268
consensus_15467#1 CTTTGCAGC-AGTATCCATGTCGAGATTATCGTTCGGGTTGAGCACCGACTATCTGTTAG 691
* * * ** * ** * *
consensus_15467#0 TATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTT 1421
consensus_15467#3 TATCAATTTCTTGCAAGGTGATGTTTCAGGGAATGTTGTTCCCTTCCAATGTACTATGTT 304
consensus_15467#2 GGTCGGTCT-TTGCTGTNCCANACCTC-GATTTCGTCGGCCCTAGCGACGGCTNATTNTG 326
consensus_15467#1 ACTTTGGTCGGCANGGGATGTTGNT--AGTGTTCCTCAGATTTGACGATGACCNTCATGG 749
* * * * *
consensus_15467#0 TAATATGCAATAAAACTTTATGAGTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1481
consensus_15467#3 TAATATGCAATAAAACTTTATGAGTTTCAAAAA--------------------------- 337
consensus_15467#2 GAAAANTCAGCTACAGTNCCGGTGGCCGAAAGTC-------------------------- 360
consensus_15467#1 CAATCATTGGTTGAGTCCGGTGAAGCCA-------------------------------- 777
** *
consensus_15467#0 AAAAAAAAAAAAAAAAAAAA 1501
consensus_15467#3 --------------------
consensus_15467#2 --------------------
consensus_15467#1 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||