|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1146 fasta sequence
[AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT-C-GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG-AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA-G-ACGCAGCAGAAGGAGGA-TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC-GTCCCATTCGA-GATGTT-CA-TTAGTA-CGTGCAAG-AGGTT-GAGGATCA-TGAAGGGGTCTGAAG-CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT-GAGCCT-CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA]
[+] EMBL AK073361 [AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT C GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT GAGCCT CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA]
[+] EMBL CA754663 [ AGGTCACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGT C GACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCCAGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACNACNACNAAAAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACNAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGGT CA TTAGTA CGTGGCAG AGGTT GAGng ]
[+] EMBL OSS4544A [ CACACAGCTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGCCGGGGACGGAGGAGGAGGCGGCGCCGCC CCTTNCNGACGCCCAGGGCCGGAAGCAAGCGCGCCCTCGCCGGCGAGCCTNATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGG GCAGGTGGTGGGATNGCCGCCGGTNAGGTCGTACAGGAAAGAGCTTCCTTCAGCCGACGACGACGACGACGAAGAGCAAGCNGCCGCCGGTTTCCGCGGNGGGGAA G ACGAAGCAGAAGGAGGATTTTTGCCCGCGCCGt ]
[+] EMBL OSS0861A [ CACACAGNTCATCGTCTCGAGCTACCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGAGTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTTNCGGGGACGGAGGAGGAGGCGNCGTCGTCGCGTT CTGACGNCCAGGGCCGGAAGCAAG ]
[+] EMBL AU223413 [ GGTCGTACAGG AAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGA G ACGCAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAA ]
[+] EMBL OS1321883 [ CTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGNCGCCGCCGGCTGCCGCGGC GCGNATGNACGTAGCAGAAGGAGGA TGTCGCCGGCGCCGGTGGGCTGTTCGTNAAGGTGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGTTCCTCTGCTTCTNCGGCG ]
[+] EMBL BI805155 [ TGAGCATGGACGGAGCTCCATACCTGAGGAAGATAGACCTCAAGGTGTACAAGGTCTACCGGGAGCTTCGCGAGGCACTGGA GCCATGTTCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGAC GTCCCATTCGA GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAAAGAGAGAAAGAAAAGGAAAGCAAAAAA ]
[+] EMBL AU097662 [ GACGGTCCAATCGGAGGATGTTCCATTTAGTACCGTGCAAGAAGGTTNGAGGATCACTGAAAGGGTCTGAAGCCAAGAGGCCTAGGAGCAACAA GGGTT AAACTG AC AC ACNAG AGAAATCATCATCATGTGTGCATGAGCAATTC TTTGTCCTTTNTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTT GAGCCT CCATGTGTGTTTGTACAAAGCAAACATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGCATGTATGCATGGGCTGTGTGTAaaaaaaaaa ]
[+] EMBL C91894 [ atag GATGTT CA TTAGTA CGTGCAAG AGGTT GAGGATCA TGAAGGGGTCTGAAG CAAGAGGCCTAGGAGCAACAAGGGGTTAAAAACTGAACAACAACAAGAAGAAATCATCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAGCATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTAGAAAACACAGAAGGAATGGAGGTTCGAGTTGGAGCCTCCCATGTGTGTTTGTACAAAGC ]
consensusID : consensus_15471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1091 fasta sequence
[ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCGCGGCGGA-GGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCGTCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGAGCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCTCCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGTACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK073044 [ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCGCGGCGGA GGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCGTCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGAGCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCTCCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGTACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTActatact ]
[+] EMBL OSS1428A [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGCCGACANCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACANCCGACGACCTGCCCTCCACGNCCAGGGGCAAGAAGCGCGNCGTCGCGNCGNA GGACAACAACGg ]
[+] EMBL AU062894 [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCCGCCGTGGGGTACGCCGNCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCGCCG GGCGGANGGACAACAACGCCAACGTCGCCGTCGCCGACGACGACGAGCACGAC ]
[+] EMBL OSS1448A [ CATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATTGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTNGGCCTTCCTNGG ]
[+] EMBL C27641 [ TTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACCACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAGAAATGGAAGCNGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGCTGGG CTGCCTGGGACAGCCGACGACCTNCCCTCCACGCCCAGGGGCAAG ]
[+] EMBL AU082466 [ GGCGCCGTNCTTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAANTCCGCGAGGCCCTGGAGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTA AAAAAAAAAAAA ]
[+] EMBL CB966815 [ CCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT ]
[+] EMBL AU166913 [ GCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATNTGAAGCCNCAGGGCTAGGATCNCCAAGGCAAATGAAGATNTAATNTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTNTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCNCAAAGGAGATGTGGAGATTTGGGCTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTNCTCCTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097039 [ ATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTA AAAAA ]
consensusID : consensus_15471#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[GCGCCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACATGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGCCCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACCCAGCAGCATCGCATCGCATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAATTTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAACAGCCAACGACCACGGATGGCATGGTGCTTTGCTTGCGTTTAGTGTTCCCATCGTCTTCAACAAAACTTCAGTCAGGGTTTTCACATTTTCATGCAATTTTCAGCCAGCCACCAACGGCAGCATT]
[+] EMBL CB965851 [GCGCCGCCGACGGCGCCAACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACATGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGCCCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACCCAGCAGCATCGCATCGCATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAATTTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAACAGCCAACGACCACGGATGGCATGGTGCTTTGCTTGCGTTTAGTGTTCCCATCGTCTTCAACAAAACTTCAGTCAGGGTTTTCACATTTTCATGCAATTTTCAGCCAGCCACCAACGGCAGCATT]
consensusID : consensus_15471#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[TAGCTTGCGGCGTTCTCCGGCGCCGCGACGGCGCCACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT]
[+] EMBL CB966470 [TAGCTTGCGGCGTTCTCCGGCGCCGCGACGGCGCCACCCGTCGGAGTTCGCCATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGTCCCTTTCGACATGTTCACCAGCACATGCAAGAAGTTGAGGATCATGAAGAGATCTGAAGCCACAGGGCTAGGATCACCAAGGCAAATGAAGATCTAATCTAAGAGCGACAAGAGATCGATCGATGCATTCCATCAACTTTTCATTTCTTTTTATTTTTTTTCCTCCCAAGCCAAAAAGGAGATGAGCTTGGGGGCATCAAAGCAAACACATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTTTAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGTGTATGTACAAACGAAACAGTTATTATATAT]
consensusID : consensus_15471#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[ACGCCGCCCTCNACCCGTNCCGACTTCGCCGTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNTCCCNTTCGAGATGTTCATTNGTACCGTGCAAGNGGTTGAGGNTCNTGAAGGGGTCTGAAGCAAGAGGCCTNGGNGCAACANGGGGTTAAAAACTGNNCNACAACAAGANGAANTCNTCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097008 [ACGCCGCCCTCNACCCGTNCCGACTTCGCCGTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNTCCCNTTCGAGATGTTCATTNGTACCGTGCAAGNGGTTGAGGNTCNTGAAGGGGTCTGAAGCAAGAGGCCTNGGNGCAACANGGGGTTAAAAACTGNNCNACAACAAGANGAANTCNTCATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCATCTCATCTCCTCATTGCAACCTTCAAGAAAGAGAGAGAGAGAAAGAAAAGGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15471#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 219 fasta sequence
[CTGGAGGCCATGTTCCTGTGCTTCTCCGGCGGCNCCNCCNGCNGNCCGCCGTCANCCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGTCCCATTCGAGATGTTCATTAGTACGTNCAATAGGTTGAGGATCATGAAGGGGTCTAAAGCAAGAGGTCTAGGAGCANCAAGGGGTTAAAAACTGNACAACA]
[+] EMBL AU066128 [CTGGAGGCCATGTTCCTGTGCTTCTCCGGCGGCNCCNCCNGCNGNCCGCCGTCANCCCGTCCGACTTCGCCGTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGTCCCATTCGAGATGTTCATTAGTACGTNCAATAGGTTGAGGATCATGAAGGGGTCTAAAGCAAGAGGTCTAGGAGCANCAAGGGGTTAAAAACTGNACAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15471#1 ACAGCCAACGCATCGTCTTCCTTCTTCGTCGTCGATAGATCGGCTCTCGAGCTCACAACC 60
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 ------------------------------------------------------------
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 ACATCGATCGTCTCCGGCAAGCCGACGTACGTACGACTAGCTAGCTAGAGAGGAAGCGAG 120
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 ------------------------AAAGTCAGAGGTCACACAGCTCATCGTCTCGAGCTA 36
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 AAATGGAAGCCGCCGTGGGGTACGCCGCCGACAGCCTCATCAAGGCCACCGAGCTCAGGC 180
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 CCTAGCTGGAAGAAGAAGAGGAAGAAGAGGAGGAGGAGCTCGTCGGAGTTTAGTTGGTGA 96
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 TGGGCCTGCCTGGGACAGCCGACGACCTGCCCTCCACGCCCAGGGGCAAGAAGCGCGCCG 240
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 GTTCGCCGGAGAGATCGATCATGGAGAATCTGAAGGCGACGGAGCTGAGGCTCGGGCTGC 156
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 CCGCGGCGGAGGACAACAACGCCAACGCCGCCGCCGCCGACGACGACGAGCACGACGCCG 300
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 CGGGGACGGAGGAGGAGGCGGCGCCGCCGCCGTCGACGCCCAGGGCCGGAAGCAAGCGCG 216
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 TCGAGGCCGCGCCGCCGGTAGCCAAGGCTCAAGTGGTCGGGTGGCCGCCGGTGAGGTCGT 360
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 CCCTCGCCGGCGAGCCTGATCAGGCCAAGATCAAGCCCGCCGCCGCCGCCAAGGCGCAGG 276
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 ACAGGAAGAGCTGCTTCCAGCAACAGTCAGCGGCGGCGAGCAAGAGCAAGGCCGCCGTGA 420
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 TGGTGGGATGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCCTCCAGCCGACGACGACGA 336
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 GCAGCTGCAACAACAAAGACGAGCCCATCACCAAGAACGCGGCGCCGGCGCCGGCAGCCT 480
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 CGACGAAGAGCAAGCCGCCGCCGGCTGCCGCGGCGGCGGAGACGCAGCAGAAGGAGGATG 396
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 CCTCGGCGGCGGCGGCCAACGGCGGGTCGCTGGTGAAGGTGAGCATGGACGGGGCGCCGT 540
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 TCGCCGGCGCCGGTGGGCTGTTCGTGAAGGTGAGCATGGACGGAGCTCCATACCTGAGGA 456
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 ACCTGAGGAAGATCGACCTGAGGATGTACAAGGGCTACAGGGAGCTCCGCGAGGCCCTGG 600
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 AGATAGACCTCAAGGTGTACAAGGGCTACCGGGAGCTTCGCGAGGCACTGGAGGCCATGT 516
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 -----------------------------------------------CTGGAGGCCATGT 13
consensus_15471#1 AGGCCATGTTCGTCTGCTTCTCCGGCGCCGCCGACGGTGCCAACCCGTCG-GAGTTCGCC 659
consensus_15471#3 -----TAGCTTGCGGCGTTCTCCGGCGCCGC-GACGGCGCCA-CCCGTCG-GAGTTCGCC 52
consensus_15471#2 ------------------------GCGCCGCCGACGGCGCCAACCCGTCG-GAGTTCGCC 35
consensus_15471#0 TCCTCTGCTTCTCCGGCGGCGCCGCCGCCGACGCCGCCGTCAACCCGTCC-GACTTCGCC 575
consensus_15471#4 ------------------------------ACGCCGCCCTCNACCCGTNCCGACTTCGCC 30
consensus_15471#5 TCCTGTGCTTCTCCGGCGGCNCCNCCNGC-NGNCCGCCGTCANCCCGTCC-GACTTCGCC 71
** * ***** ** ******
consensus_15471#1 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCTTTCG-ACA 717
consensus_15471#3 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCTTTCG-ACA 110
consensus_15471#2 ATCACCTACCAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGNTCCCTTTCGCACA 95
consensus_15471#0 GTCACCTACGAGGACAAGGACGGCGACCTCATGCTCGTCGGCGACGT-CCCATTCG-AGA 633
consensus_15471#4 GTCACCTNCGAGGNCAAGGNCGGCGNCCTCATGCTCGTCGGCGACNT-CCCNTTCG-AGA 88
consensus_15471#5 GTCACCTACGAGGACAAGGACGGNGACNTCATNNTCGTCGGCGACGT-CCCATTCG-AGA 129
****** * *** ***** *** * * **** *********** *** **** * *
consensus_15471#1 TGTTCACCAG--CACATGCAAG--AAGTTGAGGAT---CATGAAGAGA---TCTG-AAGC 766
consensus_15471#3 TGTTCACCAG--CACATGCAAG--AAGTTGAGGAT---CATGAAGAGA---TCTG-AAGC 159
consensus_15471#2 TGTTCACCCAGCCCCATGCCAAGCAAGTTGCAGGCATCCATGCAAGCAGCATCTGCAAGC 155
consensus_15471#0 TGTTCATTAG-TAC-GTGCAAG--AGGTTGAGGAT---CATGAAGGGG---TCTG-AAGC 682
consensus_15471#4 TGTTCATTNG-TACCGTGCAAG--NGGTTGAGGNT---CNTGAAGGGG---TCTG-AAGC 138
consensus_15471#5 TGTTCATTAG-TAC-GTNCAAT--AGGTTGAGGAT---CATGAAGGGG---TCTA-AAGC 178
****** * * * **** * * ** * *** ****
consensus_15471#1 CACAGGG--CTAGG-ATCACCAAGG--CAAATGAAG--ATCTAATCTAAG--AGCGA--- 814
consensus_15471#3 CACAGGG--CTAGG-ATCACCAAGG--CAAATGAAG--ATCTAATCTAAG--AGCGA--- 207
consensus_15471#2 CCCCAGGTGCTAGGCATCACCCAAGGCCAAATGCAAGCATCTAATCTCAAGCAGCGCACC 215
consensus_15471#0 AAGAGGC--CTAGGAGCAACAAGGGGTTAAAAACTG--AACAACAACAAGAAGAAATCAT 738
consensus_15471#4 AAGAGGC--CTNGGNGCAACANGGGGTTAAAAACTG--NNCNACAACAAGANGAANTCNT 194
consensus_15471#5 AAGAGGT--CTAGGAGCANCAAGGGGTTAAAAACTG--NACAACA--------------- 219
* ** ** * * *** * *
consensus_15471#1 CAAGAG-ATCG-ATCG---ATGCA--TTCCATCAAC---TTTTCATTT--CTTTTT--AT 860
consensus_15471#3 CAAGAG-ATCG-ATCG---ATGCA--TTCCATCAAC---TTTTCATTT--CTTTTT--AT 253
consensus_15471#2 CAGCAGCATCGCATCGC--ATGCCATTCCCATCCACACTTTTCCATTTACCTTTTTCAAT 273
consensus_15471#0 CATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCAT 798
consensus_15471#4 CATCATGTGTGCATGAGCAATTCTTTTGTTCTTTTTGGGTTCTCCAAGACATGCAATCAT 254
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 TTTTTTTCCTC----CCAAGCCAAAAAGGAG----ATG-AGCTTGGG--GGC-ATCAAA- 907
consensus_15471#3 TTTTTTTCCTC----CCAAGCCAAAAAGGAG----ATG-AGCTTGGG--GGC-ATCAAA- 300
consensus_15471#2 TTTTGTTTCCCTCCCCCAAGCCCAACAAAGGCAGCATGCAGCTTGGGTGGGCGATCGAAC 333
consensus_15471#0 CTCATCTCCTCATTGCAACCTTCAAGAAAGAGAG-AGAGAGAAAGAAAAGGAAAGCAAAA 857
consensus_15471#4 CTCATCTCCTCATTGCAACCTTCAAGAAAGAGAG-AGAGAGAAAGAAAAGGAAAGCAAAA 313
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 -GCAAACA----CATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTT 962
consensus_15471#3 -GCAAACA----CATGGATGTGCTTCTGCTTTGTTTCCATCTTTAAAAACTAGTAGGTTT 355
consensus_15471#2 AGCCAACGAC--CACGGATGGCATGGTGCTTTGCTTGCGT-TTAGTGTTCCCATCGTCTT 390
consensus_15471#0 AAAAAAAAGATGCAGTGAAAAAAATATGTGAAGCTTAATTGGAGTCATCAGATTGCAAAG 917
consensus_15471#4 AAAAAAAAAAAAAAAAAAAAAAAAA----------------------------------- 338
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 TAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGT 1022
consensus_15471#3 TAATTTTATGATTTTAGCAGCACAAAGGAGATGTGGAGATTTGGGTTCAACTCTCCATGT 415
consensus_15471#2 CAAC---AAAACTTCAGT--------CAGGGTTTTCACATTTTCATGCAATTTTCAGCCA 439
consensus_15471#0 CATGCATGCATGTGTGGATGTGTGGCTTTAATTTGTTTTTTTCCTCTTAATTAGGTGTTA 977
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 GTATGTACAAACGAAACAGTTATTATATATTGATTGTTGGTTACTACTAAAAAAAAAAAA 1082
consensus_15471#3 GTATGTACAAACGAAACAGTTATTATATAT------------------------------ 445
consensus_15471#2 GC---CACCAACGGCAGCATT--------------------------------------- 457
consensus_15471#0 GAAAACACAGAAGGAATGGAGGTTCGAGTTGAGCCTCCATGTGTGTTTGTACAAAGCAAA 1037
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 AAAAAAAAA--------------------------------------------------- 1091
consensus_15471#3 ------------------------------------------------------------
consensus_15471#2 ------------------------------------------------------------
consensus_15471#0 CATCTTTTTTCTTTTACATGAATGGTTGATTACTTTTGTAACTGGAGGGAAGAAGAATGC 1097
consensus_15471#4 ------------------------------------------------------------
consensus_15471#5 ------------------------------------------------------------
consensus_15471#1 -------------------------------------------------
consensus_15471#3 -------------------------------------------------
consensus_15471#2 -------------------------------------------------
consensus_15471#0 ATGTATGCATGGGCTGTGTGTACTTCTCCCTCTGGCTTCAATGCTTTGA 1146
consensus_15471#4 -------------------------------------------------
consensus_15471#5 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||