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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 829 fasta sequence
[GAGTAGAAAGACCCACTCCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC-GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC-GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC-GCAGTGCAACGCCG-CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC-GCCGTCGGCTTCGTGCTGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTA-GTGGACCCCGATCGAGCCATAGCAGG-CAGGGCCCAGCCAGCCAT-GGCTGGTTGGCCCC-GATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGA-TTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGG-AGA--CTGCAAAAAAAAAAAAAAAAAAACCTAGGGGCCGACCCCATGCCTATGACGATTACCCTCCTGGCGGTAAAGCGATGGAACCCGGTCCATATGCTGGCATCCCTCCATGGAACAAAGCCCAGCTCATTCACGAAGAGAGCCGCGCTACACAGGGTGGGGACATCGCACCCTTTTTTTTTTCGTCGACAGGCTGGTGGGTGTCCAAATTGACCTAAAGGG]
[+] EMBL CF332587 [GAGTAGAAAGACCCACTCCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTA ]
[+] EMBL CF299796 [ CTCCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC GCCGTCGGCTTCGTGCTGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTA GTGGACCCCGATCGAGCCATAGCAGG CAGGGCCCAGCCAGCCATGGGCTGGTTGGCCCC GATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGA TTGGTGAATACCCTTGGAA ]
[+] EMBL CF335884 [ CTCCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTAC ]
[+] EMBL CF333472 [ CCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC GCCGTCGGCTTCGTGCT ]
[+] EMBL CF334708 [ CCAACCCCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC GCCGTCGGCTTCGTGCTGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTA GTGGACCCCGATCGAGCCATAGCAGG CAGGGCCCAGCCAGCCATGGGCTGGTTGGCCCC GATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGA TTGGTGAAT ]
[+] EMBL CF298321 [ CCTGCGCCATTGCCGGCC CACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGTG GATG ACTTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC G ]
[+] EMBL CF300102 [ CCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC GCCGTCGGCT ]
[+] EMBL AW155247 [ TTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTC GCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTC GCCGTCGGCTTCGTGCTGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTA GTGGACCCCGATCGAGCCATAGCAGG CAGGGCCCAGCCAGCCAT GGCTGG TGGCCCC GATAAGCCG GATATAT ACTGTGATG ATG TTCGA TAAAA TTGC TTCG TTTG A CCATGACGA T GTG ATACCC TGG ACG AAC CGTTT GAGG AGA CTGCAAAAAANAAAAAAAAAAAACCTAGGGGCCGACCCCATGCCTATGACGATTACCCTCCTGGCGGTAAAGCGATGGAACCCGGTCCATATGCTGGCATCCCTCCATGGAACAAAGCCCAGCTCATTCACGAAGAGAGCCGCGCTACACAGGGTGGGGACATCGCACCCTTTTTTTTTTCGTCGACAGGCTGGTGGGTGTCCAAATTGACCTAAAGGG]
[+] EMBL BQ906345 [ TGGCGTCGCTGTCCATGNCCACAACGCTNCCGTCAGCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCC GACTACTCGTTCGCCAAGGTGGTGGCCAAGTTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTCGGGGCAGCAGTGCAACGCCGCCCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCAGCCGTCGGCTTCGTGCTGCTCCGGGTGGA GCGCCCGTCGAGGAGTCGGAGTATGTGGACCCCGATCGAGCCATAGCAGGCCAGGGCCCGGCCAGCCAT GGCTGGTTGCCCCCAGATAACCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTTGGTGAATACCCTTGGAACGAAACACGTTTTGGAG C CAAAAAAAAAA ]
[-] EMBL CF300101 [ GGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGGACTACTCGTTCGCCAAGGTGGTGGCCAAGTTGAGCCCCGCCGGCGGGAAGACCCGCGGCGGCGCGTTCGGGGC GCAGTGCAACGCCG CCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGTTCGTGCTCGTCGGCGTC CCCGTCGGCTTCGTGCTGCTCCGGGTGGAGGCGCCCGTCGAGGAGTCGGAGTA GTGGACCCCGATCGAGCCATAGCAGG CAGGGCCCAGCCAGCCAT GGCTGGTTGGCCCC GATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGA TTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAAAAAAAAAAAAAA ]
consensusID : consensus_15506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 632 fasta sequence
[GTCCGCCCTTGCGCCATTGCCGGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCGGCGGCGAG-GAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA-C-TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG-TTCGGGGCGCAGTGCAACGCCGC-CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC-TTCGTGC-TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG-TGGACCCCGA-TCGAGCCA-TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG-CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCAGCTGTAAAAAAAAA]
[+] EMBL AU082990 [GTCCGCCCTTGCGCCATTGCCGGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCGGCGGCGAG GAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCAGCTGTACAAAAA ]
[+] EMBL CA754323 [ GGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCGGCGGCGAG GAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCCAATGCAATTGGTTTTTCAGCTGTtac ]
[+] EMBL AK058858 [ CACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCGGCGGCGAG GAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTGCAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGG ]
[+] EMBL C74197 [ CTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCNG GGNTAGNGAAGAGGAGCGGCGTGACGTACGTNGAGGGGATGAACGCGTACAGNGGGCTCAANGCGCTCAACAAGGTGACCCTGCTCGGCG ]
[-] EMBL CF335885 [ GTCCATGGCCACAACGCTGCCGTCGCTGGCCGGCGCCGCACCGGCGGCGAG GAAGAGGAGCGGCGTGACGTACGTGGAGGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTATC TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCAGCTGTAAAAAA ]
[+] EMBL OSS11641A [ CGTACGTGGAGGGGATGAACGCGTACAGGGGNCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCGTTTCGGGGCGCAGTGCAACGNCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCNTTCGGCTTTCGTGCTTGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAGTTGGACCCCGATTCGAGCCATTAGCAGGCAGGGCCCAGCCAACCATTNTNGTTTGGNCCCCATTAAGCCGTTATATATna ]
[-] EMBL CF334707 [ GGGGATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA CATCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGCNCGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCAGCTGTAAAAAAAAA]
[+] EMBL CB683624 [ AACCCTTACAGCCTGCTCAAGGCGCTCAACAAGGTGACTCTGCTCTGCGTGCGCTAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAATCTGAACCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCATTGCAACTCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCCGC TTCGTGC TGCTCCTGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TATCAGGCAGGGCCCACCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACAtcg ]
[-] EMBL CF332588 [ GCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAGACCGCCGACTA C TCGTTCGCCAAGGTGGTGGCCAAGTTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAGAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAAaaaaa ]
[+] EMBL CF589202 [ GACTA C TCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGCCGCGGCGGCGCG TTCGGGGCGCAGTGCAACGCCGC CGGTGAGATATTCAGGATCGCCGTCATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGC TTCGTGC TGCTCCGGGTGGAGGCGGCCGTCGAGGAGTCGGAGTAG TGGACCCCGA TCGAGCCA TAGCAGGCAGGGCCCAGCCAGCCATGGCTGGTTGG CCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATTAAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGTTTTGGAGG ]
[+] EMBL BI799777 [ ccgCTTGGAACGAAACACGTTTTGGAGGCAGAACCTGCAAATGC ATTGGTTTTTCAGCTGTAAAAAAA ]
consensusID : consensus_15506#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence
[CCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGCGCCGACCNGAGGGANAGAGGAGCGGCGTGACGTACGTGGAGGGATGAACGCGTACAGGGCTCAAGGGTCAACAAGGTACCCTGCTCGGGTCGAAGACCGCNCTACTCTTCGCAAGGTGTGGCAAGTGAGCCCGC]
[+] EMBL OSC9191 [CCCCCTGCGCCATTGCCGGCCACACTCCTCTTCCTCCTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCGTCGCTGGCCGCGCCGACCNGAGGGANAGAGGAGCGGCGTGACGTACGTGGAGGGATGAACGCGTACAGGGCTCAAGGGTCAACAAGGTACCCTGCTCGGGTCGAAGACCGCNCTACTCTTCGCAAGGTGTGGCAAGTGAGCCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15506#0 GAGTAGAAAGACCCACTCCAACCCCCCCTGCGCCATTGCCGG-CCACACTCCTCTTCCTC 59
consensus_15506#2 -----------------------CCCCCTGCGCCATTGCCGG-CCACACTCCTCTTCCTC 36
consensus_15506#1 -------------------GTCCGCCCTTGCGCCATTGCCGGGCCACACTCCTCTTCCTC 41
*** ************** *****************
consensus_15506#0 CTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCG 119
consensus_15506#2 CTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCG 96
consensus_15506#1 CTCCATCGCCAAGAACCACCACGAGCAATGGCGTCGCTGTCCATGGCCACAACGCTGCCG 101
************************************************************
consensus_15506#0 TCGCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGG 179
consensus_15506#2 TCGCTGGCCG-CGCCG-ACCNGAGG---GANAGAGGAGCGGCGTGACGTACGTGGAGGG- 150
consensus_15506#1 TCGCTGGCCGGCGCCGCACCGGCGGCGAGGAAGAGGAGCGGCGTGACGTACGTGGAGGGG 161
********** ***** *** * ** * ****************************
consensus_15506#0 ATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAG 239
consensus_15506#2 ATGAACGCGTACA--GGGCTCAAGGG--TCAACAAGGT-ACCCTGCTCGG---GTCGAAG 202
consensus_15506#1 ATGAACGCGTACAGCGGGCTCAAGGCGCTCAACAAGGTGACCCTGCTCGGCGTGCGCAAG 221
************* ********** ********** *********** * ***
consensus_15506#0 ACCGCCGACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGC 299
consensus_15506#2 ACCGCN--CTACTC-TTCGC-AAGGTG-TGGCAAG--TGAGCCC-GC------------- 241
consensus_15506#1 ACCGCCGACTACTCGTTCGCCAAGGTGGTGGCCAAGCTGAGCCCCGCCGGCGGGAAGAGC 281
***** ****** ***** ****** **** * ******* **
consensus_15506#0 CGCGGCGGCGCGTTCGGGGCGCAGTGCAACGCCGCCGGTGAGATATTCAGGATCGCCGTC 359
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 CGCGGCGGCGCGTTCGGGGCGCAGTGCAACGCCGCCGGTGAGATATTCAGGATCGCCGTC 341
consensus_15506#0 ATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGTGGAG 419
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 ATCATGAACGGGCTCGTGCTCGTCGGCGTCGCCGTCGGCTTCGTGCTGCTCCGGGTGGAG 401
consensus_15506#0 GCGGCCGTCGAGGAGTCGGAGTAGTGGACCCCGATCGAGCCATAGCAGGCAGGGCCCAGC 479
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 GCGGCCGTCGAGGAGTCGGAGTAGTGGACCCCGATCGAGCCATAGCAGGCAGGGCCCAGC 461
consensus_15506#0 CAGCCATGGCTGGTTGGCCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATT 539
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 CAGCCATGGCTGGTTGGCCCCGATAAGCCGTGATATATAACTGTGATGTATGTTTCGATT 521
consensus_15506#0 AAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGT 599
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 AAAATTTGCTTTCGTTTTGTACCCATGACGATTGGTGAATACCCTTGGAACGAAACACGT 581
consensus_15506#0 TTTGGAGGAGACTGCAAAAAAAAAAAAAAAAAAACCTAGGGGCCGACCCCATGCCTATGA 659
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 TTTGGAGGCAGAACCTGCAAATGCAATTGGTTTTTCAGCTGTAAAAAAAAA--------- 632
consensus_15506#0 CGATTACCCTCCTGGCGGTAAAGCGATGGAACCCGGTCCATATGCTGGCATCCCTCCATG 719
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 ------------------------------------------------------------
consensus_15506#0 GAACAAAGCCCAGCTCATTCACGAAGAGAGCCGCGCTACACAGGGTGGGGACATCGCACC 779
consensus_15506#2 ------------------------------------------------------------
consensus_15506#1 ------------------------------------------------------------
consensus_15506#0 CTTTTTTTTTTCGTCGACAGGCTGGTGGGTGTCCAAATTGACCTAAAGGG 829
consensus_15506#2 --------------------------------------------------
consensus_15506#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||