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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 862 fasta sequence
[ACCACAAGCCTAGCGAGCTTGGTTGATTTTTCGTGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTGGTGGTGGGCAGGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCA-N-TG-G-ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC-GGATTCTATCCGGGCGC-AGTAC-AGTACCC-GAGAGGAGTGTTCGTCCCTTCA-AACGAGTACGAGGCGGCAGGGGCAACTCGGG-C-TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAAC-GAGCTGGCCGCGAAGACCACCGG-CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC-GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA-TCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK107966 [ACCACAAGCCTAGCGAGCTTGGTTGATTTTTCGTGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTGGTGGTGGGCAGGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCAGC TG G ACATGATTAGGTCAATGCATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGG C TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGACCACCGG CACCACCCCGCCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA TCGATAGATATGCTCGCCTGCAGTGTGTTGT ]
[+] EMBL OSC147 [ GCCTAGCGAGCTTNGTTGATTTTTCGTGTGCGTNCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATNGCGTCGTTGGGTNGTGGTGGTNGTNGGCAGGGG CGCCCAACGG AGCNGCNTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTNGAGCCGCCCACCCTTACCGCNGCGCA N TG G ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTNCCACCTGTCAAC GGATTCTATCCGGGCGC AGTACAAGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTA ]
[+] EMBL OSC2301 [ AGCTTGGTTGATTTTTCGTGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTGGTGGTGGGCAGGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCA G TG G ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGG CTTGCCAAAAGGGCCAAGCAGACTNACATTTNCGCTGAGAAC GAGCTTGCCGCGAAGACCACCGG CACCA CCCACCACCAGCCG GCCGAAGAAGTNATTCCC ]
[+] EMBL OSC469 [ TGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTNGTGGTGGGCAGGGGCCGCCCAACGGCAGCGG GTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTNTCGTGGAGCCGCCCACCCTTACCGCGGCGCA N TG GTACATGATTAGGTCAATGTATCTCTCGTCGGTTGGTNTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGGNC TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAACGGAGCTGGCCGCGAAGACCACCGGNGACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGTGAGA ]
[+] EMBL OSC3151 [ TGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTGGTGGTGGGCAGGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGNCCACCCTTACCGCGGCGCA N TG G ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGG CTTNCCAAAAGGGCCAAGCAGACTNACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGA ]
[+] EMBL OSC463 [ TGTGCGTGCGGTTGTGTAGGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTNGTGGTGGTGGTNGGCAGGGG CGCCCAAC GCAGC GNGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCG A N TG G ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGG C TNGCAAAAGGGCCAAGCAGACTGACATTTCCG TTAGAAC GAG TTGCCGCGAAGACCAn ]
[+] EMBL AU164033 [ cCGGCGCA NCTG G ACATGATTAGGTCAANGTATCTCTCGTCGCTTGGTGTGCCACCTGTC AC GGATTCTATCCGGGCNC AGTCC AGTACCC GANAGGAGTGTTCGTCCCTTCA AACGAGTACNA GCGGCAGGGGCAACTCGGG C TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA TCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL OSC2751 [ GCA N TGNG ACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGTCAAC GGATTCTATCCGGGCGC AGTAC AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGAGGCGGCAGGGGCAACTCGGG C TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGG ]
[+] EMBL BI795566 [ gcGCCACCTGTCAACGGGATTCTATCCGGGCGCAAGTAC AGTACCCGGAGAGGAGTGTTCGTCCCTTCAGAACGAGTACGA GC GCA GGGC ACTC GG C T CCAAAAGGGCCAA CAGACTGACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGCAGCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA TCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAA ]
[+] EMBL BI799920 [ AGTACCC GAGAGGAGTGTTCGTCCCTTCA AACGAGTACGA GCGGCA GGGCAGCTCGGG C TGCCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAAC GAGCTGGCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGAC ACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGACTCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAA ]
[+] EMBL BI798339 [ TTCGTCCCTTCA AACGAGTACGA GC GCA GGGCAGCTC GG C T CCAAAAGGGCCAA CAGACTGACATTTCCGCTGAGAAC GAGCT GCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA TCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAAAAAAAAAA ]
[+] EMBL BI795764 [ GCCAAGCAGACTGACATTTCCGCTGAGAAC GAGCT GCCGCGAAGACCACCGG CACCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC C GCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCA CCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA TCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAAAAAAA ]
[+] EMBL C99215 [ TGGATACATGGCGCGC GCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCNTCCAGCCGGGCGGCCTNTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTNCCTGTATGTACTCTGTGTGAATGTGTGA TCGNTAGATATGNTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 678 fasta sequence
[TCACCATCAAGGGCCGTGTCGTGAANCCGGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGT-CAACGGATT-CT-ATCCGGGCGCAGTAC-AGTA-CCCGAGAGGAGTGTTCGTCCCTTCAAACGA-GTA-CGAGGCGGCAGGGGCAGCTCGGGCTG-CCAAAAGGGCCAAGCAGACT-GACATTTCCGCTGAGAACGAGCTGGCCGC-GAAGACCACC-GGCAC-CACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGC-GCGC-GCGGC-C-GGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGC-CGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTGTGAAAAAATTT]
[+] EMBL AU085950 [TCACCATCAAGGGCCGTGTCGTGAANCCGGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGTCAATGTATCTCTCGTCGCTTGGTGTGCCACCTGT CAACGGATT CT ATCCGGGCGCAGTAC AGTA CCCGAGAGGAGTGTTCGTCCCTTCAAACGA GTA CGAGGCGGCAGGGGCAACTCGGGCTG CCAAAAGGGCCAAGCAGACT GACATTTCCGCTGAGAACGAGCTGGCCGC GAAGACCACC GGCAC CACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGC GCGC GCGGC C GGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGC CGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTGTGAAAAA ]
[+] EMBL BI795980 [ ggtgcaccCCACCTGTACCA GGATTGCTAATCCGGGCGCAGTACAAGTACCCCGAGAGGA TGTTCGTCCCTTCAAACGAGGTA CGAGGCGGCA GGGCAGCTC GGCTGCCCAAAAAGGCCAAGCAGACTGGACATTTCCGCTGAGAACGAGCT GCCGCAGAAGACCACCGGGCACACACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCAGCGCAGCAGCACAGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCACGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGC CCTCCA CCCGGCGCCCTCTGAGCGTTACTATCTACTACTATTACCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGCAAGAAACCATGCGTTTGTGTGTGGTGTGT GCATGGTGGACAACTCATAT CCGGTTGATTTACCTGTATGTACTCTGTG GAATGTGTGATCG ]
[+] EMBL BI799696 [ TCCGGGC CAGTAC AGTA CCCGAGAGGAGTGTTCGTCCCTTCAAACGA GTA CGA GCGGCAGGGGCAGCTCGGGCTG CCAAAAGGGCCAAGCAGACT GACATTTCCGCTGAGAACGAGCTGGCCGC GAAGACCACC GGCAC CACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGC GCGC GCGGC C GGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGC CGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTGTGAAAAAA ]
[+] EMBL BI797867 [ GAGAGGAGTGTTCGTCCCTTCATACGA GTAGCGAGCTGGCA GGGCAGCTCGGGCTG CCAAAAGGGCCAAGCAGACT GACATTTCCGCTGAGAACGAGCTGGCCGC GAAGACCACCAGGCAC CACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGC GCGC GC GC C GGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGC CGGCGTGCGTGCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCT CAGTGT TT T GTTTTTAATAA ]
[+] EMBL BI797117 [ CTTTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGCCAGAAACCCTGCGTTTGTGTGTGGTGTGTGGCCTGGTGGACCACTCATATGCCGGTTGATTTACCCGTATGTACTCTGTGTGAAAGTGTGATCGATAGATATGCTCGCCTCCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTGTGAtcttgttt]
consensusID : consensus_15508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence
[GCCTAGCGAGCTTGGTTGATTTTTCGTGTGCGTCGGTTGTGTAGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGTGTGTGGTGGCAGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGGGCGCAGTACAGTACCCGAGAGGAGTGTTCGTCCCTTCAAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATC-TACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAA-CCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAA]
[+] EMBL BI800211 [GCCTAGCGAGCTTGGTTGATTTTTCGTGTGCGTCGGTTGTGTAGCGAAATCCTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGTGTGTGGTGGCAGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGGGCGCAGTACAGTACCCGAGAGGAGTGTTCGTCCCTTCAAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATC TACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCCGGCAGAAA CCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAA]
[+] EMBL BI799954 [ cacGGGGCGCCTCCAGCCGGGCGGCCTCTGAGCGTTACTATCTTACTACTAATAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTGCGTGATAATTAAATAAGTGAGACCC GCAGAAACCCATGCGTTTGTGTGTGGTGTGTGGCATGGTGGACACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGA CGATA ATA GCTCGCC CAGTGTG TGTGGTTTTTAATAAAAA ]
consensusID : consensus_15508#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[ACCGAGCGGCAGGGCCAGCTCGGCTCCCAAAAGGCCCAACCAGACTGACATTTCCGCTGAGAACGACTGCCGCGAAGACCACCGCACCACCCCCACCACCACCGGCGCCGAAGAAGTGACCCCGCGAGAGGAATACATGGCGCGCCGCCGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGCCGCGTGCGTCAGGCGACCGACCCAGCGAGCGAACGAATAATCAGGGGCCCTCCACCGGCGCCTTGAGCGTTACTATTATACTATTACTGTATTTTCTATTTTCAGCTGAAGCTGCGTGATAATTAAATAAGTGAGACCCGCAGAAACCATGCTTTGTGTTGTTTGCATGGTGACAACTCATACCGTTGATTTACCGTAGTACTCTGGTGAATGTGTGATCGATAAATAGCTCCCCCAGTGTGTTGTGGTTTTAAAAAAAAA]
[+] EMBL BI797439 [ACCGAGCGGCAGGGCCAGCTCGGCTCCCAAAAGGCCCAACCAGACTGACATTTCCGCTGAGAACGACTGCCGCGAAGACCACCGCACCACCCCCACCACCACCGGCGCCGAAGAAGTGACCCCGCGAGAGGAATACATGGCGCGCCGCCGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGCCGCGTGCGTCAGGCGACCGACCCAGCGAGCGAACGAATAATCAGGGGCCCTCCACCGGCGCCTTGAGCGTTACTATTATACTATTACTGTATTTTCTATTTTCAGCTGAAGCTGCGTGATAATTAAATAAGTGAGACCCGCAGAAACCATGCTTTGTGTTGTTTGCATGGTGACAACTCATACCGTTGATTTACCGTAGTACTCTGGTGAATGTGTGATCGATAAATAGCTCCCCCAGTGTGTTGTGGTTTTAAAAAAAAA]
consensusID : consensus_15508#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence
[GTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU094491 [GTGTGGTGTGTGGCATGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATCGATAGATATGCTCGCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15508#2 ------------------------------------------------------------
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 ACCACAAGCCTAGCGAGCTTGGTTGATTTTTCGTGTGCGTGCGGTTGTGTAGGCGAAATC 60
consensus_15508#1 ------------------------------------------------------------
consensus_15508#3 ------------------------------------------------------------
consensus_15508#2 ------------------------------------------------------------
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 CTCCGGTTTTTTCTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGGTGGTGGT 120
consensus_15508#1 ------------------------------------------------------------
consensus_15508#3 ------------------------------------------------------------
consensus_15508#2 ------------------------------------------------------------
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 GGGCAGGGGCCGCCCAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAG 180
consensus_15508#1 -------------------------------------------------TCACCATCAAG 11
consensus_15508#3 ------------------------------------------------------------
consensus_15508#2 ------------------------------------------------------------
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 GGCCGTGTCGTGGAGCCGCCCACCCTTACCGCGGCGCANTGGACATGATTAGGTCAATGT 240
consensus_15508#1 GGCCGTGTCGTGAANCCGGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGTCAAT 71
consensus_15508#3 ------------------------------------------------------------
consensus_15508#2 ---------------------------------------------------------GCC 3
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 ATCTCTCGTCGCTTGGTGTGCCACCTGTCAACGGATTCTATCCGGGCGCAGTACAGTACC 300
consensus_15508#1 GTATCTCTCGTCGCTTGGTGTGCCACCTGTCAACGGATTCTATCCGGGCGCAGTACAGTA 131
consensus_15508#3 ------------------------------------------------------------
consensus_15508#2 TAGCGAGCTTGGTTGATTTTTCGTGTGCGTCGGTTGTGTAGCGAAATCCTCCGGTTTTTT 63
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 CGAGAGGAGTGTTCGTCCCTTCAAACGAGTACGAGGCGGCAGGGGCAACTCGGGCTGCCA 360
consensus_15508#1 CCCGAGAGGAGTGTTCGTCCCTTCAAACGAGTACGAGGCGGCAGGGGCAGCTCGGG-CTG 190
consensus_15508#3 --------------------------------ACCGAGCGGCAGGGCCAGCTCGG--CTC 26
consensus_15508#2 CTCGTAGTTTGGGATCGATCGATGGCGTCGTTGGGTGGTGTGTGTGGTGGCAGGGCCGCC 123
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 AAAGGGCCAAGCAGACTGACATTTCCGCTGAGAACGAGCTGGCCGCGAAGACCACCGGCA 420
consensus_15508#1 CCAAAAGGGCCAAGCAGACTGACATTTCCGCTGAGAACGAGCT--GGCCGCGAAGACCAC 248
consensus_15508#3 CCAAAAGGCCCAACCAGACTGACATTTCCGCTGAGAACGACT----GCCGCGAAGACCAC 82
consensus_15508#2 CAACGGCAGCGGCGTCCCAACCAACCGGCCGGTGTTCACCATCGAGGGCCGTGTCGTGGA 183
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 CCACCCCACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGGCGCGC- 479
consensus_15508#1 CGGCACCACCCC-ACCACCAGCCGCGCCGAAGAAGTGATGCCCGCGAGATGGATACATGG 307
consensus_15508#3 CG-CACCACCCCCACCACCACCGGCGCCGAAGAAGTGAC-CCCGCGAGAGGAATACATGG 140
consensus_15508#2 GCCGCCCACCCTTACCGCGGCGCAGCTGGACATGATTAGGGGCGCAGTAC---AGTACCC 240
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 GCGGCCGGCCGGCGTCGAGCTCCATC--GATTCCTCCGGCGACCGGCCGG---CGTGCGT 534
consensus_15508#1 CGCGCGCGGCCGGCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGGCCGGCGTGCGT 367
consensus_15508#3 CGCGC-CGCC--GCCGGCGTCGAGCTCCATCGATTCCTCCGGCGACCGCC--GCGTGCGT 195
consensus_15508#2 G-AGAGGAGTGTTCGTCCCTTCAAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCC 299
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 GCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCC 594
consensus_15508#1 GCAGGCGACCGACCCAGCGAGCGAACGAATAAAATCAGGGGCGCCTCCAGCCGGGCGGCC 427
consensus_15508#3 -CAGGCGACCGACCCAGCGAGCGAACGAATAA--TCAGGGGC-CCTCCACC--GGCG--C 247
consensus_15508#2 TCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTG 359
consensus_15508#4 ------------------------------------------------------------
consensus_15508#0 TCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTG 654
consensus_15508#1 TCTGAGCGTTACTATCTACTACTATTAGCTGTAGTTTTGCTATTTTCAGCGTGAAGACTG 487
consensus_15508#3 CTTGAGCGTTACTATTA--TACTATTA-CTGTA--TTTTCTATTTTCAGC-TGAAG-CTG 300
consensus_15508#2 CGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCA 419
consensus_15508#4 ---------------------------------------------GTGTGGTGTGTGGCA 15
consensus_15508#0 CGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCA 714
consensus_15508#1 CGTGATAATTAAATAAGTGAGACCCGGCAGAAACCATGCGTTTGTGTGTGGTGTGTGGCA 547
consensus_15508#3 CGTGATAATTAAATAAGTGAGACCCG-CAGAAACCATGC-TTTGTGT----TGTTTG-CA 353
** *** ** **
consensus_15508#2 TGGTGGACA-CTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATC 478
consensus_15508#4 TGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATC 75
consensus_15508#0 TGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATC 774
consensus_15508#1 TGGTGGACAACTCATATGCCGGTTGATTTACCTGTATGTACTCTGTGTGAATGTGTGATC 607
consensus_15508#3 TGGTG-ACAACTCATA---CCGTTGATTTACC-GTA-GTACTCTG-GTGAATGTGTGATC 406
***** *** ****** * *********** *** ******** **************
consensus_15508#2 GATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAA----------- 527
consensus_15508#4 GATAGATATGCTCGCCTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 135
consensus_15508#0 GATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAAAAAAAAAAAAAAAAAAAAA 834
consensus_15508#1 GATAGATATGCTCGCCTGCAGTGTGTTGTGGTTTTTAATAATTTGGTGTGTTCGCGTGTG 667
consensus_15508#3 GATAAATA-GCTCCCC--CAGTGTGTTGTGGTTTTAAAAAAAAA---------------- 447
**** *** **** ** ** ** **
consensus_15508#2 ----------------------------
consensus_15508#4 AAAAA----------------------- 140
consensus_15508#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 862
consensus_15508#1 TGAAAAAATTT----------------- 678
consensus_15508#3 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||