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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15509#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1371 fasta sequence
[CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC-GG-GT-CGTGGCGCA-NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG-GG-TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC-GG-GCCACCGTCCGCCTCTTCTTCCACGACTGC-TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC-CTCTCCCTCGCCGGCGACGGC-TTCGACACGG-TCAT-CAAGGCCAGGG-CGGCCGT-CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG-CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC-AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT--CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA-CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC-AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT-C-AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA-CTATGGGAGCAAGATAAATTATC-TGAACAAAAAGTCAAAAAAA]
[+] EMBL AK071181 [CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GGCGT CGTGGCGCAGCTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGGC TTCGACACGG TCAT CAAGGCCAGGG CGGCCGT CGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCG CGGACATCCTGGTCATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGGAGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCGTTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATGATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCCTTCGACAACCAGTACTTCGTC AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGAT ]
[-] EMBL C19121 [ GCTGTGTCAGTAGTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGNACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGNCGCCGNCGGGAGC GGCGT CGTGGCGCA CTCAGGCGGGACTACTACGTCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGTCGTC GG GGCANCGTCCGGCTNTTCTTTCACGACTGC TTCGTCGAGGGATNCGACGNGTCGGTGATCGTGGTGTCGTCGGGGAACAANAAGGCGGAGAAGGACCACCCGAACAAA CT ]
[+] EMBL C91753 [ AGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTCCGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGNCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCANCCGAACAAC CTCTTCCTCGNCGGCGAC GC TTt ]
[+] EMBL C96874 [ catgAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GG GTACGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGCGG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GGCGCCACCGTCCGNCTCTTCTTNCACGACTGC TTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTNGCCGGCGACGGCTTTCGACACGGTTCATNCAAGGCCAGGGACGGCCGTACGACGNCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGACGGACATNCTGGTCATGGCCACCCGA ]
[+] EMBL C22705 [ ttatGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCG CGNCGCCGNGAGC GG TT CGTGGCGCA GTCAGGCGGGACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTNGCCGTCGGG GGCACCGTCCGNCTCTTCTTCCACGACTGC TTCGTCGAGGGATNCGACGCGTCGGTGATCGTGGTGTCGTCGGGG ACAACACGGCGGA ]
[+] EMBL C22700 [ GCGGCCGGCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC G GT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCNTGTGCCCCGACGTCGAGACCATCGTGCGCAACG GG TGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGCCTCTTCTTCCACGACTGCTTTCGTCGAGGGATGCNACGCGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTCCCTCGCCGGCGACGNT TTCGACACGG TCAT CAAGGNCAGGG CGGCCGT CGA ]
[+] EMBL OSC328 [ nCACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGC GN GTNCGTGGCGCA CTCAGGCGGGACTACTACGCCAGCTTNTGCCCCGACGTCNAGACCATCGTGCGCAACG GG TGACCAAGAAAGTNCAGGAGACGTCCGTCGCCGTC GG GCCACCGTCCGNTTCTTCTTCCACGACTGT TTCGTCGAGGGATGCAACGNGTCGGTNATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACNTTTTCCTTCGCgg ]
[+] EMBL C73541 [ ACAGCATGGGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCNGG TT CGTGGCGCA NTCAGGCGGGACTACTACGCCAGCGTGTGCNCCGACGTCGAGACCATCGTGCGCNANG GGTTGACCAAGAAAGTNCAGGAGACGTCCGTNGCCGTC GG NCCACCGTCCGCCTCTNCTTCCACGACTGC NTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAAC CTCTTCCTCGCCGGCGAAGNT TTCG ]
[+] EMBL BI800303 [ ACCCCGCGCGCTTTCGACAACCAGTACTTCGTCAAACCTCCAGAA GGGATGGCCCTCTTCACCTCCGACCAGGTGCTATACTCCGACGCCCGTTCGCGCCCCACCGTCGACGCCTGGCCGCCCAACAGCTCCGACTTCGAGCTTCCGCCTTCGTCCCCCCCATGACCAACCTC GCCGCGTCGGCGTCAAGACCGACCCGTC CAGGCCAACATCC CCGCGACTGCGCGATGCTCATCTGA C CCGCCGCGGGTGGGATGGTCGTCGGCACGACGAC GCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGACCAAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT CAAATTAAATTACCTAGCTAGCCCAAATGTATTGTG TTTTTAA CTATGGGAGCAAGATAAATTATC TGAACAAAAA ]
[+] EMBL AU076064 [ C AACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTNGCGCCCCACCGTCGACGCCTGGGCGGCCAAAAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGANCG CGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATC TGAACATGTTGTCAAAAAAA]
[+] EMBL C19114 [ TTCACCTNCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CCGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGANGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGAAACCNGGNATTAAGNTTAaaaaa ]
[+] EMBL C19125 [ CGNTCGCGCCCCACNGTAGACGCNTGGGCGGCCAACAGCTCCGACTTCGAGCT CGCTTTCGTCGCCGCCATGACCAACTTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGA CGCCGCCGCGGGCGGCATGGTCGTCGGCANGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGC AAAAGTTTTAATCAGTTAATTATATTGGA ]
[+] EMBL BI796745 [ ccg AAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAAT C AATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAA CTATGGGAGCAAGATAAATTATCTTGAAAAAAA ]
[+] EMBL BI796648 [ AATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCC AATTAAATTACCTAGCTAGGCC AATGTATTGTGTTTTTTAACCTATGGGAGC AGATAAATTATC TGAAAAA ]
consensusID : consensus_15509#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 675 fasta sequence
[ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC-ACCGTCGACGCCTGGGCGGCCAA-CAGCTCCGACTTCG-AGCTCG-CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC-GGC-GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAAAAAAAAAAAA]
[+] EMBL BI796482 [ACCGACATGATCGCTTTATCTCGGCGCACACGTGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGACTGGACCCGGTGACCCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCC ACCGTCGACGCCTGGGCGGCCAA CAGCTCCGACTTCG AGCTCG CCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCCAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCAaaaaaaaaa ]
[-] EMBL C22707 [ CTCCGACGACCCGTNGCGCCCCAACCGTCGACNCTTGGGCGGCAAANAAGCTCCGACTTCGNAGCTCGCCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTNAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGAT ]
[+] EMBL C19113 [ TCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGAACCNCCCGCGGNCGGCATGGGCGTCGGCACGACGACGGCGGTCAGC GGC GGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATTTTCATCTGCAAAAAA ]
[+] EMBL BI797861 [ GACGGCGGTCAGCAGGCAGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCAGGAATTAAaaa ]
[+] EMBL AU029760 [ ACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCNNCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTNGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATNTTGGAANCCNGGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGCCAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTCATTTTCAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15509#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 489 fasta sequence
[CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG-ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC-AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA]
[+] EMBL AU075994 [CCCGACGATGGACGCCGGGTACGCGTCGCAGCTGCAGGCGGCGTGCCCGGCCGGCGTGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGACGCCGCGCGCNTTCGACAACCAGTATTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCACCTCCGACCAGGTGCTCTACTCCGACG ACCGCTCGCGCCCCACCGTCGACGCCTGGGCGGCC AACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA]
[+] EMBL C19119 [ AGGGNATGGGCCTCTTNACCTCCGACNAGTTGCTCTACTCCGACGAACCCGTCGCGCCCCACCGTCGACCCTTGGGCGGCCAAAAAGCTCCGACTTCGAGCTCNCCTTCGTCGCCGCCATGACCAACCTCGGCCGCGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCATCTG AANCCCCGCGGGCGGCATNGGC TCGGCACGACGACGGCGGTCANCGGCGGCCACTGCGGTTCTCTCAATTGTTCATAAATAGTTTTAANTGCAGCCTGCAGCGCTGAAGTTCTGAAAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAnn]
consensusID : consensus_15509#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 440 fasta sequence
[GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA]
[+] EMBL C22699 [GGAGCTGGGATTCGGATTCTGGTGGTGATGTTGGCGGTCGCNCGCCGGGAGCNACNGNTGNGCGCANTCAGNGCGGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAAAGTGCAGGAGACGTCCGTCGCCGTCGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCTCGCCGGCGACGTTTTCGACACGGTCATCAAGGCCAGGGCGGCGTCNGACGCCGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGAGACGTAATTTTCGTTTGCCGGCGGCNTTCGTACGGCGTTGAACTTCGGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 CGCACGACTCGCACACGCTCCTCGTCCCTTCTTCTACCGCGGCCGCGCGCTGTGTCAGTA 60
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 GTGCGTGTTGGTTTGGGAGAGCTAGCGCGGCCGGCACAGCATGGGAGCTGGGATTCGGAT 120
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 TCTGGTGGTGATGTTGGCGGTCGCCGCCGCCGGGAGCGGGTCGTGGCGCANTCAGGCGGG 180
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 ACTACTACGCCAGCGTGTGCCCCGACGTCGAGACCATCGTGCGCGACGGGTGACCAAGAA 240
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 AGTGCAGGAGACGTCCGTCGCCGTCGGGCCACCGTCCGCCTCTTCTTCCACGACTGCTTC 300
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 GTCGAGGGATGCGACGCGTCGGTGATCGTGGTGTCGTCGGGGAACAACACGGCGGAGAAG 360
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 GACCACCCGAACAACCTCTCCCTCGCCGGCGACGGCTTCGACACGGTCATCAAGGCCAGG 420
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 GCGGCCGTCGACGCCGTGCCGCAGTGCACCAACCAGGTCTCCTGCGCGGACATCCTGGTC 480
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 ATGGCCACCCGAGACGTCATTGCGCTGGCCGGCGGGCCGTCGTACGCCGTGGAGCTCGGG 540
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 AGGCTGGACGGGCTGAGCTCGACGGCGAGCAGCGTCGACGGGAAGCTGCCGCCGCCGTCG 600
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 TTCAACCTGGACCAGCTGACATCGCTGTTCGCCGCGAACAACCTGTCCCAGACCGACATG 660
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 ------------------------------------------------------------
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 ATCGCTTTATCTGCGGCGCACACGGTGGGGTTCGCGCACTGCGGCACGTTCGCGAGCCGG 720
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 -ACCGACATGATCGCTTTATCTCGGCG-CACACGTGGGTTCGCGCACTGCGGCACGTTCG 58
consensus_15509#2 --------------------CCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 36
consensus_15509#0 ATCCAGCCGTCGGCGGTGGACCCGACGATGGACGCCGGGT-ACGCGTCGCAGC---TGCA 776
consensus_15509#3 ---GGAGCTGGGATTCGGATTCTGGTGGTG-ATGTTGGCGGTCGCNCGCCGGG---AGCN 53
* * * * ** *** * * *
consensus_15509#1 CGAGCCGGATCCAGCCGTCGCGGTGGACCCGAACATCGCGCTGGA-CTGGACCCGGTGAC 117
consensus_15509#2 GGCGGCGTGCCCGGCCGGCG---TGGACCCGAANATCGCGCTGGAGCTGGACCCGGTGAC 93
consensus_15509#0 GGCGGCGTGCCCGGCCGGCG---TGGACCCGAACATCGCGCTGGAGCTGGACCCGGTGAC 833
consensus_15509#3 ACNGNTGNGCGCANTCAGNGC--GGGACTACTACGCCAGCGTGTGCCCCNACGTCGAGAC 111
* * * * * **** * * ** * ** * ***
consensus_15509#1 --CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 175
consensus_15509#2 G-CCGCGCGCNTTCGACAACCAGTA-TTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 151
consensus_15509#0 G-CCGCGCGCCTTCGACAACCAGTACTTCGTCAACCTCCAGAAGGGGATGGGCCTCTTCA 892
consensus_15509#3 CATCGTGCGCGACGGGTGACCAAGA--------AAGTGCAGGAGACGTCCGTCGCCGTCG 163
** **** * **** * * * *** ** * * * * **
consensus_15509#1 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 234
consensus_15509#2 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 210
consensus_15509#0 CCTCCGACCAGGTGCTCTACTCCGACGACCGCTCGCGCCCCACCGT-CGACGCCTGGGCG 951
consensus_15509#3 GCCACCGTCCGC--CTCTTCTTCCACGACTGCTT-CGTCGAGGGATGCGACGCGTCGGTG 220
* * * * **** ** * ***** *** ** * * ****** * ** *
consensus_15509#1 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 290
consensus_15509#2 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 266
consensus_15509#0 GCCAACAGCTCCGACTTCGAGCTCGCCTTCGTCGCCG--CCAT--GACCAACCTCGGCCG 1007
consensus_15509#3 ATCG-TGGTGTCGTCGGGGAACAACACGGCGGAGAAGGACCACCCGAACAACCTCTCCCT 279
* * ** * ** * * ** * * *** ** ******* **
consensus_15509#1 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 350
consensus_15509#2 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 326
consensus_15509#0 CGTCGGCGTCAAGACCGACCCGTCGCAGGGCAACATCCGCCGCGACTGCGCGATGCTCAT 1067
consensus_15509#3 CGCCGGCGACGTTTTCGACACG------GTCATCAAG-GCCAGGGCGGCGTCNGACGC-- 330
** ***** * **** ** * ** ** *** * * *** * *
consensus_15509#1 CTGAACCCCCCGCGGGCGGCATGGNCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 410
consensus_15509#2 CTGNACGCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 386
consensus_15509#0 CTGACGCCGCCGCGGGCGGCATGGTCGTCGGCACGACGACGGCGGTCAGCGGCGGCCACT 1127
consensus_15509#3 -CGTACCGCAGTTCAACAACCAGGTCTTCTNCGCGGACATCTTGGTNATTGGCCACCCGA 389
* * * ** * ** * ** * *** * *** **
consensus_15509#1 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 470
consensus_15509#2 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 446
consensus_15509#0 GCGGTTCTCTCAATTGTTCATAAATAGTTTTAGCTGCAGCCTGCAGCGCTGAAGTTCTGA 1187
consensus_15509#3 GACGTAATTT---TCGTTTGCCGGCGGCNTTCG--------TACGGCGTTGAACTTCGGG 438
* ** * * * *** * ** * * * *** **** *** *
consensus_15509#1 AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 530
consensus_15509#2 AAAATATACAACTAGCTTTTTAGAGCAAAAAAAAAAAAAAAAA----------------- 489
consensus_15509#0 AAAATATACAACTAGCTTTTTAGAGCAAAAGTTTTAATCAGTTAATTATATTGGAAACCA 1247
consensus_15509#3 AA---------------------------------------------------------- 440
**
consensus_15509#1 GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 590
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 GGAATTAAGATTATTTTGTGCATCTGATAGTGGTGAATCAATTAAATTACCTAGCTAGGC 1307
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACATGTTGTNATT 650
consensus_15509#2 ------------------------------------------------------------
consensus_15509#0 CAAATGTATTGTGTTTTTTAACTATGGGAGCAAGATAAATTATCTGAACAAAAAGTCAAA 1367
consensus_15509#3 ------------------------------------------------------------
consensus_15509#1 TTCATCTGCAAAAAAAAAAAAAAAA 675
consensus_15509#2 -------------------------
consensus_15509#0 AAAA--------------------- 1371
consensus_15509#3 -------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||