|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 874 fasta sequence
[ATAACCCTCCTAAGGGAAT-AGCTTGGG-CG-CGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAA-CATGCATGCATTCATCTCATCATCAGCCAACCAAATGAGAGATCGATTCGATCGAATCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC]
[+] EMBL BI305613 [ATAACCCTCCTAAAGGAAT AGCTTGGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTT AGCAAAGCAACCATGCATGCATTCATCTCATCATCAGCCAACC ]
[+] EMBL CB967452 [ AGGGAAT AGC TGGG CG CG CTCTG CTCTGCCTCTGGCTCCGG TCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCG CGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAAGCTATAAATGATTTGGAGTCCGCAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAA CAAGCATGCATTCATCTCATCATCAGACAACAAAATGAGAGATCGATTCGATCGAATCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC]
[+] EMBL CB966710 [ GGGAATAAGCTTGGG CG CGCCTCT NCTCTGCCTCTGGCT CGGTTC TTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAAGCAC CATGCATGC TTCATCTCATCATCAG CAACCAAATcggaagac ]
[+] EMBL BI306320 [ CTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTGCAACATTTGAGCAGGTATAAGCCAGGTATAAACATATTTCGAGAAGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAACTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATATGTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCCAAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAACTTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACACAACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGC AAGCAC CATGCATGCATTCATCTCATCATCAGCCAACCA ]
consensusID : consensus_15516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 822 fasta sequence
[TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGACGGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG-ATCGCCGCCGGCGGCGCCG-TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC-TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC-AGCCAC-AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC-AGCCGC-AGCCGCAGCGGCGGCGG-CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA-CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT-GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG]
[-] EMBL AU166074 [TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCT ]
[-] EMBL AK103001 [ aagaTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACAGACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACCTACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACACAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCCGGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGCCGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGACGGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG]
[+] EMBL BI305976 [ CCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATGGCCGCCGCCGGCGCCG ACTACGCC ]
[-] EMBL AU164086 [ TCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC A NCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGC ]
[-] EMBL AU163431 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGG NGCACCGTTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC A NCGC AGCCGCAGCGGCGGCGGACGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGA ]
[-] EMBL AU164198 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCG CAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ]
[-] EMBL AU164183 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCT ]
[-] EMBL AU164220 [ TCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ]
[-] EMBL AU184802 [ CTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCG ATCGCCGCCGGCGGCGCCG TCTCCGCCTCCGGCTCGGCCTCCTCGGCGGC TGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AGCCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGA ]
[-] EMBL AU063781 [ CCGGTTNTTTCGCCTTACCTGCCTNGGCCTC GCGAATCGCCGNC GCGGCGCCG TCTTNCCCTCCGGCTCGGCCTCCTCGGCGGCTTGCAGGCTCTGCCTTTTTGGCCTCTGCCTCGGCCTC AGCCAC AGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AG CGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTTAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATTACAANCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ]
[-] EMBL AU064321 [ CTCTTTGGCCTCTGCCTCGGCCTN AGCCACAAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGC AGCCGC AAGCGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGAC ]
[-] EMBL AU097588 [ CTCTGCCTCGNCCTCAAGCCAC AGTCTCCGNCGGAGCAGCCGCAGCCTGATCATCTGNCGGCTTTGTCTCTTCGACCTGCGCAAGCCGCNAG CGCAGCGGCGNCGN CGGTGGCTTCTTCTTCCTCAACGNCGNCGACGACCGGCTCCTGGTCCTGGANAGCCTCCA CCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGCGAGCAGTGGAAGCTAGTGCTCA TGCGTCACTG ]
[-] EMBL AU161805 [ TGCCGGCTTTGTCTCTTCGACCTGNGC AGCCGCNAG CGCAGCGGCGGCGG CGGTGGCTTCTTCTTCCTTAANGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTT GGACCTCNACGGTGGCCATTGGTGATGAACTGATGATGATTACAANCGANGCGAGCAGTGGAAGCTAGTGCTCA TGCGTNACTGTGACTGAnacgnag ]
consensusID : consensus_15516#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 814 fasta sequence
[CTCTGCCTCTGGTCCGGTTCTTTCGCCTCACCTGCCTCGGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTCAGCCACAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGNGNAGCCGCAGCNGCGGNGGNNGTGGCTTCTTCTTCCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTNGANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAATGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNGATAATGATNNANAATACAATTNGAGAAGTNGAAACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATTNGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTATAGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNNATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAANAATAAATATANAANANTTTTNAAAAAATTANAGTAAAATAANTANTAAAAGNNANTNAAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGAAAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGNTAANATATTGNT]
[+] EMBL AU070607 [CTCTGCCTCTGGTCCGGTTCTTTCGCCTCACCTGCCTCGGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGCCTCCTCGGCGGCTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTCAGCCACAGTCTCCGCCGGAGCAGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGNGNAGCCGCAGCNGCGGNGGNNGTGGCTTCTTCTTCCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTNGANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAATGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNGATAATGATNNANAATACAATTNGAGAAGTNGAAACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATTNGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTATAGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNNATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAANAATAAATATANAANANTTTTNAAAAAATTANAGTAAAATAANTANTAAAAGNNANTNAAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGAAAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGNTAANATATTGNT]
consensusID : consensus_15516#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 398 fasta sequence
[CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCACAGCCACACTCTCCGCCAGACCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAACGGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTGCACCACGGACGGAGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT]
[+] EMBL BI306108 [CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCACAGCCACACTCTCCGCCAGACCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAACGGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTGCACCACGGACGGAGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT]
[+] EMBL BI306350 [CTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTCGGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGC CTCCTCGGCGGCTGCAGGCTCTGCCTCGGCCTCAGCCACAGTCTCCGCCGGAGCAGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGCGGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGACTGCTTGGACCTCGACGGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGCGAGCAGTGAAAGCTAGTGCTCACTGCGT]
consensusID : consensus_15516#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence
[CNGCTGAAGATTTGCCTNTTTGGCCTCTGCCTCGGCCTTTAACCACAGTTTTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGCGCAGCGGCGGCGGCGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGACCTGCAGCATTTGAGCAGGTATAAGCCANGCCCACGCGTTCNCNG]
[-] EMBL C73647 [CNGCTGAAGATTTGCCTNTTTGGCCTCTGCCTCGGCCTTTAACCACAGTTTTCCGCCGGAGCAGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGCGCAGCGGCGGCGGCGGTGGCTTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTGGACAGCCTCCACCACGGCCGGAGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGACTGCTTGGACCTGCAGCATTTGAGCAGGTATAAGCCANGCCCACGCGTTCNCNG]
consensusID : consensus_15516#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence
[CCGAGTGAGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTGGGCTCCAATAAAAATGTGTCAGGTTGGCTACCGGGCCCAGTGTCAGTAGGTGCTGACGTGGCAGGTCATNACTGGCCCTGGAGCTCGTGCCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTNAAAATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA]
[+] EMBL AU102065 [CCGAGTGAGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGCCGGCGGCGGCGGCGGCGGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTGGGCTCCAATAAAAATGTGTCAGGTTGGCTACCGGGCCCAGTGTCAGTAGGTGCTGACGTGGCAGGTCATNACTGGCCCTGGAGCTCGTGCCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTNAAAATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15516#1 TTTTTTTTTTTTTTTACGGAAAATTATTACTAGCATTTTTAACGATGAAACCACAACACA 60
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 ------------------------------------------------------------
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 GACCGAGAACATACACGGGCACGAGCTCCAGGGCCAGTGATGACCTGCCACGTCAGCACC 120
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 ------------------------------------------------------------
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 TACTGACACTGGGCCCGGTAGCCAACCTGACACATTTTTATTGGAGCCCAATTCATTACA 180
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 ------------------------------------------------------------
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 CAACACACACGTACGCCGCCGCCGCCGCCGCCGCCGCCGGCAGCCATCAGCTTCATCTCC 240
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 ------------------------------------------------------------
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 GGCTCGCCATCTCTCGCCAGCTCACTCGGTGGCCTCGACGGCAGCCACCTCGGGTGCGGC 300
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 ------------------------------------------------------------
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 CGGTGGCGCCGCCTCAGCCTCCTCCGCCACCTCGACGGGCGCCGCAGCAGCTTCTTCGAC 360
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 -------------------------------------------ATAACCCTCCTAAGGGA 17
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ------------------------------------------------------------
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 GGGAGCGGCCGCCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTC 420
consensus_15516#3 ---------------------CTCTGCCTCTGGCTCCGGGTCTTTCACCTCACCTGCCTC 39
consensus_15516#0 ATAGCTTGGGCGCGCCTCTGCCTCTGCCTCTGGCTCCGGTTCTTTCGCCTCACCTGCCTC 77
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ---------------------CTCTGCCTCTGG-TCCGGTTCTTTCGCCTCACCTGCCTC 38
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 GGCCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 479
consensus_15516#3 GGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTACGGCTCGGCACTCCTCGGCGG 99
consensus_15516#0 GGCCTCGGCGATCGCCGCCGCCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 136
consensus_15516#4 ---------------------------------CNGCTGAAGATTTGC-CTNTTTGGC-- 24
consensus_15516#2 GGNCTCGGCGATCGCCGCCGGCGGCGCCGTCTCCGCCTCCGGCTCGGC-CTCCTCGGCGG 97
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 CTGCAGGCTCTGCCTCTTTGGCCTCTGCCTCGGCCTC-AGCCACAGTCT-CCGCCGGAGC 537
consensus_15516#3 CTGCAGGCTCTGCCTC---------------GGCCAC-AGCCACACTCT-CCGCCAGACC 142
consensus_15516#0 CTGCAGGCTCTGCCTC---------------GGCCTC-AGCCACAGTCT-CCGCCGGAGC 179
consensus_15516#4 -------CTCTGCCTC---------------GGCCTTTAACCACAGTTTTCCGCCGGAGC 62
consensus_15516#2 CTGCAGGNTCTGCCTCTTTGGCCTCTGCCTCGGNCTC-AGCCACAGTCT-CCGCCGGAGC 155
consensus_15516#5 -----------------------------------------------------CCGAGTG 7
**
consensus_15516#1 AGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCCGCAGCCGCAGC 597
consensus_15516#3 AGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAAC 202
consensus_15516#0 AGGAGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCGGCGCAGCCGCAGCCGCAGC 239
consensus_15516#4 AGCCGCAGCCTGATCATCTGCCGGCTTTGTCTCTTCGACCTGCGCAGCNGCAGC-GCAGC 121
consensus_15516#2 AGCCGCAGCCTGATCATCTGNCGGNTTTNTCTNTTNNACCTGNGCAGN-GNAGCCGCAGC 214
consensus_15516#5 AGCTGGCGAGAGATGGCGANCCGGAGATGAAGCTGATGGCTGC-CGGCGGCGGCGGCGGC 66
** * * *** *** * * * * * * * ** ** *
consensus_15516#1 GGCGGCGGCGGTGGCTTCTTCTT---CCTCAACGGCGGCGACGACCGGCTCCTGGTCCTG 654
consensus_15516#3 GGCGGCGGCGGTGGCGCCTTCTTACTCCTCAACGGCGGCGACGACCGGCTCCTG------ 256
consensus_15516#0 GGCGGCGGCGGTGGCGCCTTCTTCCTCCTCAACGGCGGCGACGACCGGCTCCTGG----- 294
consensus_15516#4 GGCGGCGGCGGTGGC---TTCTTCTTCCTCAACGGCGGCGACGACCGGCTCCTGGTCCTG 178
consensus_15516#2 NGCGGNGGNNGTGGCTTCTTCTT---CCTCAANNGCGGCGAAGACCGGNTCCTGGTNCTN 271
consensus_15516#5 GGCGGCGGCGTACGTGTGTGTTGTGTAATGAATTG-GGCTCCAATAAAAATGTG------ 119
**** ** * * * * ** * *** * **
consensus_15516#1 GACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGAC- 711
consensus_15516#3 GACAGCCTGCACCACGGACGG--AGCCTGCTCCGCCGCCAGACTAGGGGCGGTGGCGAC- 313
consensus_15516#0 -ACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGGGCGGCGGCGAC- 350
consensus_15516#4 GACAGCCTCCACCACGGCCGG--AGCCTCCTCCGCCGCCAGACTAGGCGCGGCGGCGAC- 235
consensus_15516#2 GANAGNNTCCANCAAGGGNGNTAANCTCCATAAGAAGANAGACTAAGNGAGGNGGAGNAA 331
consensus_15516#5 -TCAGGTTGGCTACCGGGCCC--AGTGTCAGTAGGTGCT-GACGTGGCA-GGTCATNAC- 173
** * ** * * * *** * **
consensus_15516#1 TGCTT--GGACCTCGAC-GGTGGCCATTGGTGATGAACTGATGATGATGACAAGCGATGC 768
consensus_15516#3 TGCTT--GGACCTCGAC-GGTGGCCATTGGTGATGAACTGATGATGATGACTAGTGATGC 370
consensus_15516#0 TGCTT--GGACCTGCAA-CATTTGAGCAGGT-ATAAGCCAGGTATAAACATATTTCGAGA 406
consensus_15516#4 TGCTT--GGACCTGCAG-CATTTGAGCAGGT-ATAAGCCANGCCCACGCGTTCNCNG--- 288
consensus_15516#2 TGCTTTNNAACCTNGAATGGTTGCAATNGGTGATNAACTNG--ATAATGATNNANAATAC 389
consensus_15516#5 TGGCCCTGGAGCTCGTG---CCCGTGTATGTTCTCGGTCTGTGTTGTGGTTTCATCGTTN 230
** * ** ** *
consensus_15516#1 GAGCAGTGGAAGCTAGTGCTCACTGCGTCACTGTGACTGATCGATGAGATCTCG------ 822
consensus_15516#3 GAGCAGTGAAAGCTAGTGCTCACTGCGT-------------------------------- 398
consensus_15516#0 AGATAAAAGAGAAGATAGAAGATCAATGGACTATAAATTTATAGCCAGCTGTAGTACAAA 466
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 AATTNGAGAAGTNGAA-----ACTAAATGCTCAAATGAGNTNAATGTAGAATNATANATT 444
consensus_15516#5 AA--AATGCTAGTAATAATTTTCCGTATCTTTTTTTTTTGTTA----------------- 271
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 CTCCAAGATACATGTGTGTTGTGATATGTATGGCCAAATATGAATTGTGTAGTAGTATAT 526
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 NGTAATNATNNAGTNGANNTTNGAGGGGGTGAGTTACAAGTANNCAAATTTTAAAACTAT 504
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 GTTTATAGGTAACTATTGTATGAATTGGTTGCTAAATTGACTATGGCTGTGTTTAGATCC 586
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 AGTTGAAAGTNGTTATTAAAANAGTGANATNAATTTGAGAANNTTAAATTTNANAAACNN 564
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 AAAATTTGGATACAAACTTCAATCCTTTTCCATCACATCAACATGTCATATACACACAAC 646
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 ATAATTANATATTGNGAGAAAAACATAGGTNNNTTAAACAAAATTTTAAATTGNNTTTAA 624
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 TTTTCAGTCACATCATCTCCAATTTCAACCAAAATCTAAACTTTACGCTGAACTAAACAC 706
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 NAATAAATATANAANANTTTTNAAAAAATTANAGT--AAAATAANTANTAAAAGNNANTN 682
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 AACCTATAAATGATTTGGAGTCAGTAGTTGGTTGTACTATTAAACTTGCTCTTAAGCAAA 766
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 AAAANAAAATNAAAAANTTNTAAAAAAGTTANTNNAANAGANAAATAGAAANAANTAGGA 742
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------------------
consensus_15516#3 ------------------------------------------------------------
consensus_15516#0 GCAACATGCATGCATTCATCTCATCATCAGCCAACCAAATGAGAGATCGATTCGATCGAA 826
consensus_15516#4 ------------------------------------------------------------
consensus_15516#2 AAATTAAACTNANATNATANNNGAAATTAAANANTAAAAGNATAAAATTNGATNATNNGN 802
consensus_15516#5 ------------------------------------------------------------
consensus_15516#1 ------------------------------------------------
consensus_15516#3 ------------------------------------------------
consensus_15516#0 TCGAATGCGAACTCGTCTCTTCCGGGAGGATGATTTGACTGATGGACC 874
consensus_15516#4 ------------------------------------------------
consensus_15516#2 TAANATATTGNT------------------------------------ 814
consensus_15516#5 ------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||