cluster # 15523

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15523 cluster # 15523 Sequences # 22 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15523#0 length = 1723 sequences # 19

consensus_15523#1 length = 449 sequences # 2
consensus_15523#2 length = 142 sequences # 1

consensusID : consensus_15523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 1723
fasta sequence

                              [AAGACGTCGCTAATTGAGAGGACCGTCC-GCG-TCGCTCCCCGCGTG-AN-AACC-GGGC-GGGCGTCAACCCTA-GCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCANCCCGCCGCTGCCGG-AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAAC-GCG-G-GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGGCGAGTCACTCT-AGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGACGGCGGGAGGAAGTTGAAGGCCGGAGACGGA-GGGGACGGCCAGATCCGGCCGTCTCCTTTCTGGATCTGGAGGTCGTCGGGGTGGGGGTGATGGCGGCGGGGTGGTGAAGGTGAGACCGGCGCCAGTGCTCGGAAGAAGGCCAGAGGGGAAGGGGC-GGCCAGCGGTCTGCGATGGTGATGGCCGGTGGAGGC-GGTGC-GCCGGTGCTAGCCGGCGT-AGGTGGAGCCCAGTTTGGGCAAGATGCATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAGAGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTCGGGCGGTCGCTACTATGGCTCGTTCGTTTGG-AAAGCCGTAGGGCACGGTGAACAATAGTGTTGTCGGTGGCTTGTTCG-CCGGCATGT-CCCATGATC-AGTTGGGGC-TCCTCCCGTTCCTGGAGCTCCT-CCCCTCCTGTTGACCGGTCTGCTCTC-AGATTCCGGTTGTGGGGAGTTCCTTGGCGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACTGCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGG-CCGGGTGTGGCAAGCTGGGC-AACGATAACCCCCTTGCCCCTTC-TTTTTGGTAGCTTCGTTGGGGT-GGCTGTGCTGTT-GGCTT-CCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGG-AGCTGCTTGTAGGTGACAAGCTC-GGCAACGATAACCCTCTCCCGCTTT-CCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--AAAAAAAA]

[+] EMBL AU096403             [AAGACGTCGCTAATTGAGAGGACCGTCCGGCGTTCGCTCCCCGCGTGAANGAACC GGGCGGGGCGTCAACCCTANGCGCCGCCGCCG TTTCCCTCTCCCTCCCCCAGGCCGCCGCTGCCGGAAGCGGCCGGGCCTCGGCTCANTGTGCAAGGACGGCGGCGGCGGGGCA TTTGCCGTGGAAC GGG G GCCCGGTCCTGCGCGGGGAAGTCGGTCGGCGTTCGGTGGTGGCTGCGGNGACCCGACGGCGAATCA TCTAAGCGACGGC GNGGGGTGGGACGACGAAGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C97415               [   ACGTCGCTAATTGAGAGGACCGTCC GCG TCGCTCCCCGCGTG AN AANC GGGC GGGCGTCAACCCTA GCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCANCCCGCCGCTGCCGG AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAAC GGN G GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGGCGANTCACTCT AGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGANGGCGGGAGGAAGTTGAAGGCCGGAGACGGA GGGGACGGCCAGATCCGGCCGTCTCCTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C26803               [       CGCTAATTGAGAGGACCGTCC GCT TCGCTCCCCGCGTG AN AACCTGGGC GGGCGTCAACCCTA GCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCANCCCGCCGCTGCCGG AGCGGCCGGGCCTCGGCTCANTNTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAAC GCG GNGCCCGGTCCTGCGCGGGGAGGTCGGTCGGCNTTCGGTGGTGGCTGCGGCGACCCGACGGCNAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU065439             [       CGCTAATTGAGAGGACCGTCC GCG TCGCTCCCCGCGTG AN ANCC NGGC GGGCGTCAACCCTA GCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCATNCCGCCGCTGCCGG AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAAC GCG G GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGGCGAGTCACTCT AGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAACTTCTTGGAGACGGCGGGAGGAAGTTGAAGGCCGGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU173309             [                                                                                                                        CGG AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAACGGCG G GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGGCGAGTCACTCT AGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGACGGCGGGAGGAAGTTGAAGGCCGGANACGGANGGGGACGGCCAGATNCGGCCGTCTCCTTTCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK101219             [                                                                                                                        CGG AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAACGGCG G GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGGCGAGTCACTCT AGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGACGGCGGGAGGAAGTTGAAGGCCGGAGACGGA GGGGACGGCCAGATCCGGCCGTCTCCTTTCTGGATCTGGAGGTCGTCGGGGTGGGGGTGATGGCGGCGGGGTGGTGAAGGTGAGACCGGCGCCAGTGCTCGGAAGAAGGCCAGAGGGGAAGGGGC GGCCAGCGGTCTGCGATGGTGATGGCCGGTGGAGGC GGTGC GCCGGTGCTAGCCGGCGT AGGTGGAGCCCAGTTTGGGCAAGATGCATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAGAGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTCGGGCGGTCGCTACTATGGCTCGTTCGTTTGG AAAGCCGTAGGGCACGGTGAACAATAGTGTTGTCGGTGGCTTGTTCG CCGGCATGT CCCATGATC AGTTGGGGC TCCTCCCGTTCCTGGAGCTCCT CCCCTCCTGTTGACCGGTCTGCTCTC AGATTCCGGTTGTGGGGAGTTCCTTGGCGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACTGCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGG CCGGGTGTGGCAAGCTGGGC AACGATAACCCCCTTGCCCCTTC TTTTTGGTAGCTTCGTTGGGGT GGCTGTGCTGTT GGCTT CCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGG AGCTGCTTGTAGGTGACAAGCTC GGCAACGATAACCCTCTCCCGCTTT CCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAG                                                          ]
[+] EMBL OSS13171A            [                                                                                                                        CGG AGCGGCCGGGCCTCGGCTCAGTGTGCAAGGACGNCGGCGGCGGGGCAGTTTGCCGTGGAAC GCGTN GCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGNCGAGTCACTCT AGCGACGTCGGCGAGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGACGTCGNGAGGAAGTTGAAGGCCGNAGACGGA GGGGACGGCCAGATCCGGCCGTCTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU183207             [                                                                                                                                                                                                                                                                                                                                                                                                                                               GCGCCAGTGCTCGGAAGAAGGCCGGAGGGGAAGGGGCAGGCCAGCGGTCTGCGATGGTGATGGCCGGTGGAGGCAGGTGCAGCCGGTGCTAGCCGGCGT AGGTGGAGCCCAGTTTGGGCAAGATGCATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAGAGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTCGGGCGGTCGCTACTATGGCTCGTTCGTTTGG AAAGCCGTAGGGCACGGTGAACAATAGTGTTGTCGGTGGCTTGTTCG CCGGCATGT CCCATGATC AGTTGGGGC TCCTCCCGTTCCTGGAGCTCCT CCCCTCCTGTTGACCGGTCTGCTCTC AGATTCCGGTTGTGGGGAGTTCCTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU058377             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGGGC GGCCAGCGGTCTGCGATGGTGATGGCCGGTGGAGGC GGTGC GCCGATGCTAGCC GNGTAAGGTGGAGCCCAGTTTGGGCAAGATGCATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAGAGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTCGGGCGGTCGCTACTATGGCTCGTTCGTTTGGAAAAGCCGTA GGCACGGTGAACAATAGTGTTGTCGGTGGCTTGTTCG CCGGCATGT CCCATGATC AGTTTGGGC TCCTCCCGTTCCTGGAACTCCT CCCCTCCTGTTGACCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU058376             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGGAGGC GGTGC GCCGATGCTAGCC GNGTAAGGTGGAGCCCAGTTTGGGCAAGATGCATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAGAGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTCGGGCGGTCGCTACTATGGCTCGTTCGTTTGG AAAGCCGTAGGGCACGGTGAACAATAGTGTTGTCGGTGGCTTGTTCG CCGGCATGT CCCATGATC AGTTGGGGC TCCTCCCGTTCCTGGAGCTCCT CCCCTCCTGTTGACCGGTCTGCTCTC AGATTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL AU058370             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 gga AAACCCGTAGGGCACGGTAAACAATAGTGTTGTCGGTGGCTTGTTCGCCCGGCATGTCCCCATGATCNAGTTGGGGCTTCCTCCCGTTCCTGGAGCTCCTCCCCCTCCTGTTGACCGGTCTGCTCTCAAGATTCCGGTTGTGGGGAGTTCCTTGGCGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACTGCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGG CCGGGTGTGGCAAGCTGGGC AACGATAACCCCCTTGCCCCTTC TTTTTGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL C74795               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACAATAGTGTTGTCGGTGGCTTGTTCG CCGGCATGT CCCATGATC AGTTGGGGC TCCTCCCGTTCCTGGAGCTCCT CCCCTCCTGTTGACCGGTCTGCTCTC AGATTCCGGTTGTGGGGAGTTCCTTGGCGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACTGCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGG CCGGGTGTGGCAAGCTGGGC AACGATAACCCCCTTGCCCCTTC TTTTTGGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK059367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGGGC TCCTCCCGTTCCTGGAGCTCCT CCCCTCCTGTTGACCGGTCTGCTCTC AGATTCCGGTTGTGGGGAGTTCCTTGGCGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACTGCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGG CCGGGTGTGGCAAGCTGGGC AACGATAACCCCCTTGCCCCTTC TTTTTGGTAGCTTCGTTGGGGT GGCTGTGCTGTT GGCTT CCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGG AGCTGCTTGTAGGTGACAAGCTC GGCAACGATAACCCTCTCCCGCTTT CCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAG                                                          ]
[+] EMBL AU077835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GGGNTGAATTC GAACTGCTTGGCCCGGTTGTGCCAAG TGGCC ACCGATANCCCCCTTGCCCTTTC TTTTTGGTAGCTTCGTTGGGGT GCCTGTGCTGTTGGGCTT CCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGAAGTCGGAAGCTGCTTGTAGGTGACAAGCTCGGGCANCGATAACCCTCTCCCGCTTT CCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAAAA                                           ]
[+] EMBL C96909               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGGCCCGGGTTTTGGAAACTNGGCAAACGATAACCCCNTTGCCCCTTC TTTNTGGTAGCTTCGTTGGGGTNGGCTGTGCTGTT GGCTTCCCTGGCGTGNCTTTGGGTAGGTGTGTTGGGGGGAGTCGG AGCTGCTTGTAGGTGACAAGCTC GGCAACGATAACCCTCTCCCGCTTT CCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACNCCTNTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAA                      ]
[+] EMBL AU162924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CCCCTTGCCCCTTCTTTTTTGGTAGCTTCGTTGGGGT GGCTGTGCTGTT GGCTT CCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGG AGCTGCTTGTAGGTGACAAGCTC GGCAACGATAACCCTCTCCCGCTTTCCCTTGGTACCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGTTGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCNTGACCTCTTCTGAGGTTTTTCCTCAAAAA                                           ]
[+] EMBL AU096404             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CGATTTTCGGACGGACNTTGCTTGCGTTTCGACGNTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCTCNAGTTGTNCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCCCNTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCNTNAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAAAA                                           ]
[+] EMBL AU095030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GAAGACCCTGCTNTACGTTGTCTGTGGNCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTNTGTTCNCCTCCAGTTGTNCCNTCGCAAGTTTTTTCTTTGTTCNCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAANCCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTCTTCTTCTTTAATGAAAACAGGCTNTCCCTGACCTCTTNTGNGGTTTTTCCTCAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNAAAAAAAA]
[+] EMBL AU095029             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTCCNCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCNCCTTGTGGGTTTTGCCCGGTTTCCCCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAAGTCTNTTCTTCTTTAATGNAAACAGGNTCTCCCTGNCCTCTTCTGNNGTTTTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  AAAAAAA ]




>consensus_15523#0
AAGACGTCGCTAATTGAGAGGACCGTCCGCGTCGCTCCCCGCGTGANAACCGGGCGGGCG
TCAACCCTAGCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCANCCCGCCGCTGCCGGAGCG
GCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAACGCG
GGCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGG
CGAGTCACTCTAGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGAC
GGCGGGAGGAAGTTGAAGGCCGGAGACGGAGGGGACGGCCAGATCCGGCCGTCTCCTTTC
TGGATCTGGAGGTCGTCGGGGTGGGGGTGATGGCGGCGGGGTGGTGAAGGTGAGACCGGC
GCCAGTGCTCGGAAGAAGGCCAGAGGGGAAGGGGCGGCCAGCGGTCTGCGATGGTGATGG
CCGGTGGAGGCGGTGCGCCGGTGCTAGCCGGCGTAGGTGGAGCCCAGTTTGGGCAAGATG
CATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAG
AGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTC
GGGCGGTCGCTACTATGGCTCGTTCGTTTGGAAAGCCGTAGGGCACGGTGAACAATAGTG
TTGTCGGTGGCTTGTTCGCCGGCATGTCCCATGATCAGTTGGGGCTCCTCCCGTTCCTGG
AGCTCCTCCCCTCCTGTTGACCGGTCTGCTCTCAGATTCCGGTTGTGGGGAGTTCCTTGG
CGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACT
GCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGA
AATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGG
TGTGGCAAGCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGT
GGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCT
GCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTG
GAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTT
CTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATC
GTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGT
TGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTA
CGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTC
CTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCC
CCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAA
GTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 449
fasta sequence

                              [TGCATGTGCCTAGCTTCTCTTGCGTCTGCNAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGGTGTGGCAANCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGTGGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCTGCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTNTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTNTAAAAAAAAAAAAAAAA]

[+] EMBL AU173310             [TGCATGTGCCTAGCTTCTCTTGCGTCTGCNAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGGTGTGGCAANCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGTGGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCTGCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTGGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTNTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTNTAAAAAAAAAAAAAAAA]
[+] EMBL AU184753             [                         CTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGAAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGGTGTGGCAAGCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGTGGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCTGCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTGGAAGCCAGGGGTGTNGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTTNTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTNTTTGCTNTAAAAAAAAAAAAAAAA]




>consensus_15523#1
TGCATGTGCCTAGCTTCTCTTGCGTCTGCNAGGTGTTTGGTTTGGTGGAGTTGGTGCATG
AAATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGG
GTGTGGCAANCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGG
TGGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGC
TGCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGT
GGAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGT
TNTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCAT
CGTTCTTTGCTNTAAAAAAAAAAAAAAAA

consensusID : consensus_15523#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 142
fasta sequence

                              [TTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGTCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAANTCTGTTCCGATTTTCGGANGGAAAAAAAAAAAA]

[+] EMBL C98359               [TTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGTCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAANTCTGTTCCGATTTTCGGANGGAAAAAAAAAAAA]




>consensus_15523#2
TTGTCCTGCTCGTTCTTAGGATAGAGGCAACGATGTCGACGCCTGTGGGCGCCGTTTTCC
TTGTTGAAGGCATCGTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAANTCTGTTCCGAT
TTTCGGANGGAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15523#0      AAGACGTCGCTAATTGAGAGGACCGTCCGCGTCGCTCCCCGCGTGANAACCGGGCGGGCG 60
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      TCAACCCTAGCGCCGCCGCCGCTTTCCCTCTCCCTCCCCCANCCCGCCGCTGCCGGAGCG 120
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GCCGGGCCTCGGCTCAGTGTGCAAGGACGGCGGCGGCGGGGCAGTTTGCCGTGGAACGCG 180
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GGCCCGGTCCTGCGCGGGGAGGTCGGTCGGCGTTCGGTGGTGGCTGCGGCGACCCGACGG 240
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CGAGTCACTCTAGCGACGGCGGCGGGGTGGGACGACGAAGAGCAGCAGCTCCTTGGAGAC 300
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GGCGGGAGGAAGTTGAAGGCCGGAGACGGAGGGGACGGCCAGATCCGGCCGTCTCCTTTC 360
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      TGGATCTGGAGGTCGTCGGGGTGGGGGTGATGGCGGCGGGGTGGTGAAGGTGAGACCGGC 420
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GCCAGTGCTCGGAAGAAGGCCAGAGGGGAAGGGGCGGCCAGCGGTCTGCGATGGTGATGG 480
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CCGGTGGAGGCGGTGCGCCGGTGCTAGCCGGCGTAGGTGGAGCCCAGTTTGGGCAAGATG 540
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CATGTGGCCGGCGGAGGTAAGCAAGTTGGTGACCGGCGGAGGTGGTTGTTGCCGGCGAAG 600
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      AGGGTGTCGAGGTGGCCGGAGAAGTTGCTGGCCTGCAGGGAGGTTGTGCTTGGGTTGGTC 660
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GGGCGGTCGCTACTATGGCTCGTTCGTTTGGAAAGCCGTAGGGCACGGTGAACAATAGTG 720
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      TTGTCGGTGGCTTGTTCGCCGGCATGTCCCATGATCAGTTGGGGCTCCTCCCGTTCCTGG 780
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      AGCTCCTCCCCTCCTGTTGACCGGTCTGCTCTCAGATTCCGGTTGTGGGGAGTTCCTTGG 840
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CGAGGGGCGGGTTGCTAGCTGGGTTGGCAGATTTGCTTGGAGTTCGAGAGCCTCAGCACT 900
consensus_15523#1      -----------------------------------------------------------T 1
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GCATGTGCCTAGCTTCTCTTGCGTCTGCGAGGTGTTTGGTTTGGTGGAGTTGGTGCATGA 960
consensus_15523#1      GCATGTGCCTAGCTTCTCTTGCGTCTGCNAGGTGTTTGGTTTGGTGGAGTTGGTGCATGA 61
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      AATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGG 1020
consensus_15523#1      AATCCCTACGACGCAACCTGTCGATGGTGTTTGGGGTGGAGTCGGAGCTGCTTGGCCGGG 121
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      TGTGGCAAGCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGT 1080
consensus_15523#1      TGTGGCAANCTGGGCAACGATAACCCCCTTGCCCCTTCTTTTTGGTAGCTTCGTTGGGGT 181
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCT 1140
consensus_15523#1      GGCTGTGCTGTTGGCTTCCTGGCGTGTCTTTGGGTAGGTGTGTTGGGGGGAGTCGGAGCT 241
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTG 1200
consensus_15523#1      GCTTGTAGGTGACAAGCTCGGCAACGATAACCCTCTCCCGCTTTCCTTGGTAGCGTTGTG 301
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTT 1260
consensus_15523#1      GAAGCCAGGGGTGTCGTAGTTGGCAGGGAGAGCGAGCCGGGGCGTTTTGTCCTGCTCGTT 361
consensus_15523#2      ----------------------------------------------TTGTCCTGCTCGTT 14
                                                                     **************

consensus_15523#0      CTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATC 1320
consensus_15523#1      NTTAGGATAGAGGCAACGATGGCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATC 421
consensus_15523#2      CTTAGGATAGAGGCAACGATGTCGACGCCTGTGGGCGCCGTTTTCCTTGTTGAAGGCATC 74
                        ******************** **************************************

consensus_15523#0      GTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAACCCTGTTCCGATTTTCGGACGGACGT 1380
consensus_15523#1      GTTCTTTGCTNTAAAAAAA------AAAAAAAAA-------------------------- 449
consensus_15523#2      GTTCTTTGCTCTACCCGTTTTCTTCGGGTGAAAANTCTGTTCCGATTTTCGGANGGAAAA 134
                       ********** **                 ****                          

consensus_15523#0      TGCTTGCGTTTCGACGCTCTGTTTCCTCCTTGGAGGCTTCGTCTTGAAGACCCTGCTCTA 1440
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      AAAAAAAA---------------------------------------------------- 142
                                                                                   

consensus_15523#0      CGTTGTCTGTGGTCTGTTCATAGGAAGTCGGAGTTTTTGGCTTTGATGAGCTATGTTCTC 1500
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CTCCAGTTGTGCCGTCGCAAGTTTTTTCTTTGTTCTCCTTGTGGGTTTTGCCCGGTTTCC 1560
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      CCTTTAAACCGTGCTTATGTAAGGTTTTTGGGCCCGGTTTCCCCTCAAAACCTGGGTCAA 1620
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      GTCTCTTCTTCTTTAATGAAAACAGGCTCTCCCTGACCTCTTCTGAGGTTTTTCCTCAAA 1680
consensus_15523#1      ------------------------------------------------------------
consensus_15523#2      ------------------------------------------------------------
                                                                                   

consensus_15523#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1723
consensus_15523#1      -------------------------------------------
consensus_15523#2      -------------------------------------------