cluster # 15527

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15527 cluster # 15527 Sequences # 22 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15527#0 length = 618 sequences # 18
consensus_15527#1 length = 612 sequences # 1

consensus_15527#2 length = 392 sequences # 1
consensus_15527#3 length = 285 sequences # 1
consensus_15527#4 length = 211 sequences # 1

consensusID : consensus_15527#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 618
fasta sequence

                              [TGCACCTAGATTACCTCACTAAAGGGAAT-AGCTTG-CCGGTCCCATCGCCG-AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG-CTATGGCATG-GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA--CG--CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG-TCGTCGGCAAGAAAAAATTCATTTACGACCTG-TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG-AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG-CCACACCACTCGACCTTTATCTGAAAGGCAAGGGAAAAACTTGGACTCGAGGGCCACATAC]

[+] EMBL BU673444             [TGCACCTAGATTACCTCACTAAAGGGAAT AGCTTG CCGGTCCCATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL BI306679             [                     atGGGAATAAGCTTGCCCGGTCCCATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATNTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB964691             [                       GGGAAT AAGTGC CCGGTCCCATCGCCG AACGCCTGAAGCATGACAG CAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGg                                ]
[+] EMBL CB967233             [                       GGGAAT AGCTTG CCGGTCCCATCGCCG AACGCCTGAAGCATGACAG CAGGCTA TGCCGACGG TTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL BU673416             [                         GAAT AGCTGC CCTTTCCCATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGGCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACAGCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB966807             [                                         TCCCATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACANCCGCCCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB965154             [                                         TCCCATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB966752             [                                         gtCCATCGCCGNAACGCCTGAAGCATGACAGCCAGGCTA TGCCGACGG TTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATGNGAAAAAAT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB965043             [                                            CATCGCCG AACGCCTGAAGCATGACAG CAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL BI305559             [                                             ATCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB965187             [                                             ATCGCCG AACGCCTGAAGCATGACAG CAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB966042             [                                              TCGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB967489             [                                               CGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGG TTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCGCCTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB966999             [                                               CGCCG AAC NCTGAAGCATGACAGCCAGGCTA TGCCGACGG TTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL CB966055             [                                               CGCCG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCGATCGTCGGCAAGAAAAAATTCATTTACGACCTGATGGGGCGAAACCGTAAATCTTGACAGACGCATCAACAGCG AGGGCACGC                                                                                                                          ]
[+] EMBL CB965431             [                                                GCCG AACGCCTGAAGCATGACAG CAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAGCAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCGCAGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTAGAATACGAACACAACAAACGAACTATATCTGAAAGGCAAGGGAAAAACTTGGACTCGAGGGCCACATAC]
[+] EMBL BU672922             [                                                  CG AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCG CTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]
[+] EMBL BU673200             [                                                   G AACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCGCCTATGGCATG GAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACA  CG  CGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCG TCGTCGGCAAGAAAAAATTCATTTACGACCTG TGGGGCGACACCGTCAATCTTGCCAGCCGCATCACCAGCG AGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCG CCACACCACTCGACCTTTATCTGAAAGGC                                ]




>consensus_15527#0
TGCACCTAGATTACCTCACTAAAGGGAATAGCTTGCCGGTCCCATCGCCGAACGCCTGAA
GCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATAT
CGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAA
CCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCGCTATGGCATGGAAAAAATAAAAAC
CATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCG
CGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAA
CGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCGTCGT
CGGCAAGAAAAAATTCATTTACGACCTGTGGGGCGACACCGTCAATCTTGCCAGCCGCAT
CACCAGCGAGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAA
GGGCGAATTTGAATTCGCCACACCACTCGACCTTTATCTGAAAGGCAAGGGAAAAACTTG
GACTCGAGGGCCACATAC

consensusID : consensus_15527#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [TGGAATAAGCTTGCCGGTCCCATCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCGCTATGGCATGGAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGNGCATTCGGCNACCCGGGGGGCCCCCCCCCCGGGTTCCCGGTTTTTGGCCAAGGGGGCCGGTTTCGTTCGGGGCAAGGAAAAAAATTCCCATTTACGACCCTGTTGGGTGCGACACCTGTCAATCCTTGCCAGCCTGCATCACCAGCGAGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCGNCACACCACTCGACCTTTATCTGAAAGGCAA]

[+] EMBL CB966758             [TGGAATAAGCTTGCCGGTCCCATCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCCGAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGACGAACTGGCCGAGCGCTATGGCATGGAAAAAATAAAAACCATCGGCGATGCCTACATGGTTGCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGNGCATTCGGCNACCCGGGGGGCCCCCCCCCCGGGTTCCCGGTTTTTGGCCAAGGGGGCCGGTTTCGTTCGGGGCAAGGAAAAAAATTCCCATTTACGACCCTGTTGGGTGCGACACCTGTCAATCCTTGCCAGCCTGCATCACCAGCGAGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCGNCACACCACTCGACCTTTATCTGAAAGGCAA]




>consensus_15527#1
TGGAATAAGCTTGCCGGTCCCATCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCC
GACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCAACTTCACCCGCCTGGCC
GAAGGAATGACGCCACAGCAGGTCTTCTCCATGCTTAACCGGATATTCTCGTCCTTCGAC
GAACTGGCCGAGCGCTATGGCATGGAAAAAATAAAAACCATCGGCGATGCCTACATGGTT
GCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATT
GCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGT
ATCGNGCATTCGGCNACCCGGGGGGCCCCCCCCCCGGGTTCCCGGTTTTTGGCCAAGGGG
GCCGGTTTCGTTCGGGGCAAGGAAAAAAATTCCCATTTACGACCCTGTTGGGTGCGACAC
CTGTCAATCCTTGCCAGCCTGCATCACCAGCGAGGGCACGCCGGGCATGATTCACGTCGA
TGCCACGACCCATCAGCGCCTGAAGGGCGAATTTGAATTCGNCACACCACTCGACCTTTA
TCTGAAAGGCAA

consensusID : consensus_15527#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [GGGAATAGCTGCGGTCCCATCGCGAACGCGAAGCATGACAGCACATGCCGACGGTGCCGATCACGGTAGTCGGATATCGTCAACTTCACCCGCCTGGCCGGGAATGACGCCACAGCAGGTCTTCTCCAGCTTACGGATATCTCGTCCTTCGACGAACTGGCCGAGCGCTGGCATGGAAAAAATAAACCATCGGCGATGCCTACATGGTGCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCGTCGTCGGCAAGAAAAAATTCATTTACGACC]

[+] EMBL BU672913             [GGGAATAGCTGCGGTCCCATCGCGAACGCGAAGCATGACAGCACATGCCGACGGTGCCGATCACGGTAGTCGGATATCGTCAACTTCACCCGCCTGGCCGGGAATGACGCCACAGCAGGTCTTCTCCAGCTTACGGATATCTCGTCCTTCGACGAACTGGCCGAGCGCTGGCATGGAAAAAATAAACCATCGGCGATGCCTACATGGTGCCGGCGGACTGAACAATGAAGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGGCGTCGTCGGCAAGAAAAAATTCATTTACGACC]




>consensus_15527#2
GGGAATAGCTGCGGTCCCATCGCGAACGCGAAGCATGACAGCACATGCCGACGGTGCCGA
TCACGGTAGTCGGATATCGTCAACTTCACCCGCCTGGCCGGGAATGACGCCACAGCAGGT
CTTCTCCAGCTTACGGATATCTCGTCCTTCGACGAACTGGCCGAGCGCTGGCATGGAAAA
AATAAACCATCGGCGATGCCTACATGGTGCCGGCGGACTGAACAATGAAGCCTGCAACTA
CACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCATCGCGATTTCAC
GGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCCCGTCGTTGCAGG
CGTCGTCGGCAAGAAAAAATTCATTTACGACC

consensusID : consensus_15527#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [TCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATACTCGTCAACCTTCCCCCGCCTGGCCGACACGGAATACCGCCACCACGCCGGTCTTCTCCCTGCTTAACCGGACTATTCTCTGTCCTTCGACGACACCTGGCCGACGCGCTACTGGCACTGGAAAAACATAAAACACCACTCGGACGACTGCCTACACTGGTTGCCGGCTGGACTGAACCAATGACAAGCCTGCAACCTACCACGCTGCGC]

[+] EMBL CB965875             [TCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATACTCGTCAACCTTCCCCCGCCTGGCCGACACGGAATACCGCCACCACGCCGGTCTTCTCCCTGCTTAACCGGACTATTCTCTGTCCTTCGACGACACCTGGCCGACGCGCTACTGGCACTGGAAAAACATAAAACACCACTCGGACGACTGCCTACACTGGTTGCCGGCTGGACTGAACCAATGACAAGCCTGCAACCTACCACGCTGCGC]




>consensus_15527#3
TCGCCGAACGCCTGAAGCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGG
TAATGTTCGTGGATACTCGTCAACCTTCCCCCGCCTGGCCGACACGGAATACCGCCACCA
CGCCGGTCTTCTCCCTGCTTAACCGGACTATTCTCTGTCCTTCGACGACACCTGGCCGAC
GCGCTACTGGCACTGGAAAAACATAAAACACCACTCGGACGACTGCCTACACTGGTTGCC
GGCTGGACTGAACCAATGACAAGCCTGCAACCTACCACGCTGCGC

consensusID : consensus_15527#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 211
fasta sequence

                              [GCCGAACGCCTGAAGCATGACGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCCACTTCACCCGCCTGGCCGCAAGGCAATGCACGCCACAGCAGGTCTTCTCCCATGCTTCAACCGGATCTTCTCTGTCCTTCGCACGCAACTGGCCTGAGCGCTCATGGCCATGGCAAAAAATCAAACACACCAT]

[+] EMBL CB965731             [GCCGAACGCCTGAAGCATGACGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATATCGTCCACTTCACCCGCCTGGCCGCAAGGCAATGCACGCCACAGCAGGTCTTCTCCCATGCTTCAACCGGATCTTCTCTGTCCTTCGCACGCAACTGGCCTGAGCGCTCATGGCCATGGCAAAAAATCAAACACACCAT]




>consensus_15527#4
GCCGAACGCCTGAAGCATGACGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAA
TGTTCGTGGATATCGTCCACTTCACCCGCCTGGCCGCAAGGCAATGCACGCCACAGCAGG
TCTTCTCCCATGCTTCAACCGGATCTTCTCTGTCCTTCGCACGCAACTGGCCTGAGCGCT
CATGGCCATGGCAAAAAATCAAACACACCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15527#1      ----------------------TGGAATAAGCTTGCCGGTCCCATCGCCGAACGCCTGAA 38
consensus_15527#4      ----------------------------------------------GCCGAACGCCTGAA 14
consensus_15527#3      --------------------------------------------TCGCCGAACGCCTGAA 16
consensus_15527#0      TGCACCTAGATTACCTCACTAAAGGGAATAGCTTGCCGGTCCCATCGCCGAACGCCTGAA 60
consensus_15527#2      -----------------------GGGAATAGCT--GCGGTCCCATCGC-GAACGC--GAA 32
                                                                     ** ******  ***

consensus_15527#1      GCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATA- 97
consensus_15527#4      GCATGAC-GCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATA- 72
consensus_15527#3      GCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATAC 76
consensus_15527#0      GCATGACAGCCAGGCTATTGCCGACGGTTTTGCCGAGGTCACGGTAATGTTCGTGGATA- 119
consensus_15527#2      GCATGACAGCACA-----TGCCGACGGT---GCCGA--TCACGGTAGT-----CGGATA- 76
                       ******* **        **********   *****  ******** *      ***** 

consensus_15527#1      TCGTCAAC-TTCACCCGCCTGGCCG--AAGGAATG-ACGCCACAGCA--GGTCTTCTCC- 150
consensus_15527#4      TCGTCCAC-TTCACCCGCCTGGCCGCAAGGCAATGCACGCCACAGCA--GGTCTTCTCCC 129
consensus_15527#3      TCGTCAACCTTCCCCCGCCTGGCCGACACGGAATA-CCGCCACCACGCCGGTCTTCTCC- 134
consensus_15527#0      TCGTCAAC-TTCACCCGCCTGGCCGA--AGGAATG-ACGCCACAGCA--GGTCTTCTCC- 172
consensus_15527#2      TCGTCAAC-TTCACCCGCCTGGCCG----GGAATG-ACGCCACAGCA--GGTCTTCTCC- 127
                       ***** ** *** ************    * ***   ******  *   ********** 

consensus_15527#1      ATGCTT-AACCGGA-TATTCTC-GTCCTTCG-ACG-AACTGGCC-GAGCGCT-ATGGC-A 202
consensus_15527#4      ATGCTTCAACCGGA-TCTTCTCTGTCCTTCGCACGCAACTGGCCTGAGCGCTCATGGCCA 188
consensus_15527#3      CTGCTT-AACCGGACTATTCTCTGTCCTTCGACGACACCTGGCCGACGCGCTACTGGCAC 193
consensus_15527#0      ATGCTT-AACCGGA-TATTCTC-GTCCTTCGACG--AACTGGCC-GAGCGCT-ATGGC-A 224
consensus_15527#2      A-GCTT-A--CGGA-TAT-CTC-GTCCTTCGACG--AACTGGCC-GAGCGCT---GGC-A 173
                         **** *  **** * * *** ********     * ******   *****   ***  

consensus_15527#1      TGG-AAAAAATAAAAACCATCGGCGATGCCTACATG-GTTGCCGGCGGACTGAACAATGA 260
consensus_15527#4      TGGCAAAAAATCAAACACACCAT------------------------------------- 211
consensus_15527#3      TGGAAAAACATAAAACACCACTCGGACGACTGCCTACACTGGTTGCCGGCTGGACTGAAC 253
consensus_15527#0      TGG-AAAAAATAAAAACCATCGGCGATGCCTACATG-GTTGCCGGCGGACTGAACAATGA 282
consensus_15527#2      TGG-AAAAAATAAA--CCATCGGCGATGCCTACATG-GT-GCCGGCGGACTGAACAATGA 228
                       *** **** ** **   *  *                                       

consensus_15527#1      AGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCA 320
consensus_15527#4      ------------------------------------------------------------
consensus_15527#3      CAATGACAAGCCTGCAACCTACCACGCTGCGC---------------------------- 285
consensus_15527#0      AGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCA 342
consensus_15527#2      AGCCTGCAACTACACGCGCGCCATCGCCGAACTCGCCATTGCCATGCGCGATTTGCTGCA 288
                                                                                   

consensus_15527#1      TCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGNGCATTCGGCNACCCG 380
consensus_15527#4      ------------------------------------------------------------
consensus_15527#3      ------------------------------------------------------------
consensus_15527#0      TCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCC 402
consensus_15527#2      TCGCGATTTCACGGTCAACGACATGCGCCTCGAGGTACGTATCGGCATCGGCACCGGCCC 348
                                                                                   

consensus_15527#1      GGGGGCCCCCCCCCCGGGTTCCCGGTTTTTGGCCAAGGGGGCCGGTTTCGTTCGGGGCAA 440
consensus_15527#4      ------------------------------------------------------------
consensus_15527#3      ------------------------------------------------------------
consensus_15527#0      CGTCGTTGCAGGCGTCGTCGGCAAGAAAAAATTCATTTACGACCTGTGGGGCGACACCGT 462
consensus_15527#2      CGTCGTTGCAGGCGTCGTCGGCAAGAAAAAATTCATTTACGACC---------------- 392
                                                                                   

consensus_15527#1      GGAAAAAAATTCCCATTTACGACCCTGTTGGGTGCGACACCTGTCAATCCTTGCCAGCCT 500
consensus_15527#4      ------------------------------------------------------------
consensus_15527#3      ------------------------------------------------------------
consensus_15527#0      CAATCTTGCCAGCCGCATCACCAGCGAGGGCACGCCGGGCATGATTCACGTCGATGCCAC 522
consensus_15527#2      ------------------------------------------------------------
                                                                                   

consensus_15527#1      GCATCACCAGCGAGGGCACGCCGGGCATGATTCACGTCGATGCCACGACCCATCAGCGCC 560
consensus_15527#4      ------------------------------------------------------------
consensus_15527#3      ------------------------------------------------------------
consensus_15527#0      GACCCATCAGCGCCTGAAGGGCGAATTTGAATTCGCCACACCACTCGACCTTTATCTGAA 582
consensus_15527#2      ------------------------------------------------------------
                                                                                   

consensus_15527#1      TGAAGGGCGAATTTGAATTCGNCACACCACTCGACCTTTATCTGAAAGGCAA 612
consensus_15527#4      ----------------------------------------------------
consensus_15527#3      ----------------------------------------------------
consensus_15527#0      AGGCAAGGGAAAAACTTGGACTCGAGGGCCACATAC---------------- 618
consensus_15527#2      ----------------------------------------------------