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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 876 fasta sequence
[TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT-GGAAACTTTTAGCACATC-TGTTAATGCTCTGACTGAACCCATCGACATATAC-AGCGAATGGATCGACGAATGCGAGCGCGTG-AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC-TTACAAT-GGGGC-ATACC-T-GGTAGTCTAAAATAGCATCTGAGAGTAGT-GACACAGTTTTAGCTTTGTG-AGTT-GG-ATAGT-GGT-GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAAAAA]
[+] EMBL AK120292 [TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAAC ]
[+] EMBL CF328789 [TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAAAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACCTT GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAG ]
[+] EMBL CF319176 [ CATTTTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCCACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GAC ]
[+] EMBL CF321402 [ CATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTA ]
[+] EMBL CA766170 [atcTTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGCTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAG ]
[+] EMBL CF277703 [ TCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC TGGGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GGAATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCT ]
[+] EMBL CF279682 [ CTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAG ]
[+] EMBL C29136 [ gngntntnTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATCTTGTTAATGCTCTGACTGAACCCATCGACATATACAAGCGAATGGATCGACGAATGNGAGCGCGTG AACAACCCTGAGGAGGACAACGNCAACCACTATGNAGATGACAAT ]
[+] EMBL AU065480 [ CGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCGCTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACT ]
[+] EMBL AU069654 [ ATGGGCAAGAGGAAGTCCAAAGCAAAACCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTTGGGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTGNAACAA ]
[+] EMBL AU063370 [ GATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGNCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTG ACCTTACC TTACAAT GGGGC ATA C T GGAAGTCT AAATAGCAT TTAGGGTAGT GCCACAG TTTAG TTTG ]
[+] EMBL AU063476 [ GATACTGTCTTTTGCTGTCCATTTTGCAACCACGGAAGTAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGNTCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTNCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTTACAATGGGGGCAATACC T GGTAGTCTNAAATAGgca ]
[+] EMBL C91584 [ GTGTTGAGTGTCGCATTGATCTAAAGAACTTAATCGGCGAGGCCTCATGCAGAATTTGTTT GGAAACTTTTAGCACATC TGTTAATGCTCTGACTGAACCCATCGACATATAC AGCGAATGGATCGACGAATGCGAGCGCGTG AACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTANTGGACACAGTTTTAGCTTTGTGAAGTTGGG ATAGTGGGTGGCATCAGCTATTCAACTTGTCCTGTACATTT ]
[+] EMBL AU182161 [ TGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACC TTACAAT GGGGC ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCTTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAAAAA]
[-] EMBL CF292438 [ ATACC T GGTAGTCTAAAATAGCATCTGAGAGTAGT GACACAGTTTTAGCCTTGTG AGTT GG ATAGT GGT GCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCTTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTGGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGTCCAAAAAA ]
consensusID : consensus_15533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 670 fasta sequence
[CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAACCACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAG-CCGCTACCGCTACGACG-AAGAAGAATAGTGGTCCGTTGGCGCTTGTTCC-ATAAAACGAGTTGC-CTGAATGCTGTGC-AAAACAGTG-TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA]
[+] EMBL AU100948 [CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAACCACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCATGCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCACTATGAAGATGACAATGCCAG CCGCTACCGCTACGACG AAGAAGAATAGTGGTCCGTTGGCGCTTGTTCC ATAAAACGAGTTGC CTGAATGCTGTGC AAAACAGTG TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA]
[+] EMBL AU161394 [ GGATCGACNAATGCGAGCGCGTGACCAACCCTGAGGAGGACAACGCCAACCACTATGAANATGACAATGCCAGCCCGCTACCGCTACGACGAAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCAATAAAACGAGTTGCNTTGAATGCTGTGCAAAAACAGTGTTTGATGTAGAGTNATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAAAA]
[-] EMBL CF319177 [ AAAACAGTG TTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTCTAAAATAGCATCTGAGAGTAGTGACACAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCATGGCATGTACAAATACAACAATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTTAAAAAA ]
consensusID : consensus_15533#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[AACNACCCCTGAGGAGGACCAAGCCCACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGGCATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGAGTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCCCGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAA]
[+] EMBL BQ908636 [AACNACCCCTGAGGAGGACCAAGCCCACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGGCATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGAGTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCCCGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTTTATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGATGCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAAAAAAA]
consensusID : consensus_15533#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCCCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTTTAAAATAGCATTTGAGAGTAGTGACCCAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTTTAGTATCTTTAGTATTTAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF279681 [AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACATATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCAACCCCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCCTGAATGCTGTGCAAAACAGTGTTGATGTAGAGTGATGTGGTACTGTTACCCGTGTCAGTGAACCTTACCTTACAATGGGGCATACCTGGTAGTTTAAAATAGCATTTGAGAGTAGTGACCCAGTTTTAGCTTTGTGAGTTGGATAGTGGTGCATCAGCTATTCAACTTGTCCTGTACATTTAACATGCCGTGGTCGTGCCTGAACAAGAACTTTAGTATCTTTAGTATTTAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15533#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence
[TCCGTTGGGGGGGGTTCCATGGAGTGAGTTGCATGAATTTTGGGCAAAACAGCGTTTATGTAGAGTTATGTGGTAATGTTGCCCGTGTCAGTTAACCTTTCCTTTCAATGGGGAAAACCTGGGGGTTTGGAATAGCATATAAGAGTAGTGTCCCAGTTTTAGTTTTGTGAGTTGGATAGTGGTGCAGCAGCTATTAAACTTGTCCTGTACATTTAACATGCTGTGGTGGTGCCTTAACAAGGTTTTTAGAATATTAAGAAAAAAGAACAGTAGAAAAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT]
[-] EMBL CF321403 [TCCGTTGGGGGGGGTTCCATGGAGTGAGTTGCATGAATTTTGGGCAAAACAGCGTTTATGTAGAGTTATGTGGTAATGTTGCCCGTGTCAGTTAACCTTTCCTTTCAATGGGGAAAACCTGGGGGTTTGGAATAGCATATAAGAGTAGTGTCCCAGTTTTAGTTTTGTGAGTTGGATAGTGGTGCAGCAGCTATTAAACTTGTCCTGTACATTTAACATGCTGTGGTGGTGCCTTAACAAGGTTTTTAGAATATTAAGAAAAAAGAACAGTAGAAAAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGACGT]
consensusID : consensus_15533#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[GTTCCCGTTACGAAAAAAAAAAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCTTAAATGTTGTGCAAAACAGTGTTAATGAAAAGTAATGTGGTATTGTTACCCGTGTCAGTGACCCTTCCCTTCCAATGGGGCATACTTGGTAGTTTAAAATAGCTTTTGAGAGTAGTGCCCCAGTTTTAGCTTTGTGAGTTGGAAAGTGGGGCATCAGTTATTCAACTTGTCCTGAACATTTAACATCCCGTGGTGGGGCTTGACCAAAAACTTTAGTATTTTAAGTATTTTGTCCCGTCGTTTATAAGTCAGGGCATGTCCAAATCCACCAATGTTATTGTAGTGTGGATTGGCGTGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF277704 [GTTCCCGTTACGAAAAAAAAAAATAGTGGTCCGTTGGCGCTTGTTCCATAAAACGAGTTGCTTAAATGTTGTGCAAAACAGTGTTAATGAAAAGTAATGTGGTATTGTTACCCGTGTCAGTGACCCTTCCCTTCCAATGGGGCATACTTGGTAGTTTAAAATAGCTTTTGAGAGTAGTGCCCCAGTTTTAGCTTTGTGAGTTGGAAAGTGGGGCATCAGTTATTCAACTTGTCCTGAACATTTAACATCCCGTGGTGGGGCTTGACCAAAAACTTTAGTATTTTAAGTATTTTGTCCCGTCGTTTATAAGTCAGGGCATGTCCAAATCCACCAATGTTATTGTAGTGTGGATTGGCGTGACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15533#0 TCATTCTGGACTCCGGTTTCGTCGTCCGTTTTGCCTCCGTCTCCGTCTCCGTCTCCGCCG 60
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 ------------------------------------------------------------
consensus_15533#2 ------------------------------------------------------------
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 CTCGCCGAGGCGGGAAAAATAAGCGTTGAATCATGGGCAAGAGGAAGTCCAAAGCAAAAC 120
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 ------------------------------------------------------------
consensus_15533#2 ------------------------------------------------------------
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 CACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTCTTTTG-CTGTCCATTTTGCAAC 179
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 -------------------------CTTTNATACTGTCTTTTGGCTGTCCATTTTGCAAC 35
consensus_15533#2 ------------------------------------------------------------
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 CACGGAAGT-AGTGTTGAGTGTCGCATTGATCTAAAGAACTTAA-TCGGCGAGGCCTCAT 237
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 CACGGAAGTCAGTGTTGAGTGTCGCATTGATCTAAAGAACTTAAATCGGCGAGGCNTCAT 95
consensus_15533#2 ------------------------------------------------------------
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 GCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 297
consensus_15533#3 --AGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 58
consensus_15533#1 GCAGAATTTGTTTGGAAACTTTTAGCACATCTGTTAATGCTCTGACTGAACCCATCGACA 155
consensus_15533#2 ------------------------------------------------------------
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 357
consensus_15533#3 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 118
consensus_15533#1 TATACAGCGAATGGATCGACGAATGCGAGCGCGTGAACAACCCTGAGGAGGACAACGCCA 215
consensus_15533#2 ----------------------------------AACNACCCCTGAGGAGGACCAAGCCC 26
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 ------------------------------------------------------------
consensus_15533#0 ACC-ACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 416
consensus_15533#3 ACC-CCTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 177
consensus_15533#1 ACC-ACTATGAAGATGACAATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 274
consensus_15533#2 ACCACCTATGAAGATGACNATGCCAGCCGCTACCGCTACGACGAAGAAGAATAGTGGTCC 86
consensus_15533#5 ----------------------------GTTCCCGTTACGAAAAAAAAAAATAGTGGTCC 32
consensus_15533#4 ---------------------------------------------------------TCC 3
***
consensus_15533#0 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 471
consensus_15533#3 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 232
consensus_15533#1 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCCTGAATGCTGTGCAAAACA--GTGTTGA 329
consensus_15533#2 GCTTGGCGCCTTGTTCCACTAAACCGAGTTGCCTGAATGCTGTGCCAAACCACGTGTTGA 146
consensus_15533#5 G-TTGGCGC-TTGTTCCA-TAAAACGAGTTGCTTAAATGTTGTGCAAAACA--GTGTTAA 87
consensus_15533#4 G-TTGGGGG-GGGTTCCA-TGGAGTGAGTTGCATGAATTTTGGGCAAAACA--GCGTTTA 58
* **** * ****** * * ******* * *** ** ** **** * *** *
consensus_15533#0 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 526
consensus_15533#3 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 287
consensus_15533#1 TGTAGAGTGATGTGGTACTGTTACCCGTGTCA-GTGAACCTTA--CCTTACAA--TGGGG 384
consensus_15533#2 TGTAGAGTGATGTGGTACTGTTACCCGTGTCACGTGAACCCTTACCCTTACCACATGGGG 206
consensus_15533#5 TGAAAAGTAATGTGGTATTGTTACCCGTGTCA-GTGACCCTTC--CCTTCCAA--TGGGG 142
consensus_15533#4 TGTAGAGTTATGTGGTAATGTTGCCCGTGTCA-GTTAACCTTT--CCTTTCAA--TGGGG 113
** * *** ******** **** ********* ** * ** * **** * * *****
consensus_15533#0 CATACCTGGTAGTCTAAAATAGCA-TCTGAGAGTAGTGACACA--GTTTTAGCTTTGTGA 583
consensus_15533#3 CATACCTGGTAGTTTAAAATAGCA-TTTGAGAGTAGTGACCCA--GTTTTAGCTTTGTGA 344
consensus_15533#1 CATACCTGGTAGTCTAAAATAGCA-TCTGAGAGTAGTGACACA--GTTTTAGCTTTGTGA 441
consensus_15533#2 CATACCTGGTAGTCTAAAATAGCACTCTGAGAGTAGTGACACCACGTTTTAGCTTTGTGA 266
consensus_15533#5 CATACTTGGTAGTTTAAAATAGCT-TTTGAGAGTAGTGCCCCA--GTTTTAGCTTTGTGA 199
consensus_15533#4 AAAACCTGGGGGTTTGGAATAGCA-TATAAGAGTAGTGTCCCA--GTTTTAGTTTTGTGA 170
* ** *** ** * ****** * * ********* * * ******* *******
consensus_15533#0 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 636
consensus_15533#3 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 397
consensus_15533#1 GTTGGATA-GTGGTGCA-TCAGCTATTCAA-CTTGTCCTGTACA--TTTAACATGCCG-- 494
consensus_15533#2 GTTGGATAAGTGGTGCACTCAGCTATTCAAACTTGTCCTGNACCACTTTAACACACTGCC 326
consensus_15533#5 GTTGGAAA-GTGGGGCA-TCAGTTATTCAA-CTTGTCCTGAACA--TTTAACATCCCG-- 252
consensus_15533#4 GTTGGATA-GTGGTGCA-GCAGCTATTAAA-CTTGTCCTGTACA--TTTAACATGCTG-- 223
****** * **** *** *** **** ** ********* ** ******* * *
consensus_15533#0 ---TGGTCGTGCCTGAA---CAAGAAC--TCTAGTATCTTTAGTATTTTGTTCCGTCGTT 688
consensus_15533#3 ---TGGTCGTGCCTGAA---CAAGAAC--TTTAGTATCTTTAGTATTTAAAAAAAAAAAA 449
consensus_15533#1 ---TGGTCGTGCCTGAA---CAAGAAC--TCTAGTATCTTTAGTATTTTGTTCCGTCGTT 546
consensus_15533#2 CGCTGGTCGTGCCTGAGACCCAGANACCTTCTAGTATCTTTAGTATTTTGTTCCGTCGTT 386
consensus_15533#5 ---TGGTGGGGCTTGAC---CAAAAAC--TTTAGTATTTTAAGTATTTTGTCCCGTCGTT 304
consensus_15533#4 ---TGGTGGTGCCTTAA---CAAGGTT--TTTAGAATATTAAGAAAAAAGAACAGTAGAA 275
**** * ** * * ** * *** ** ** ** *
consensus_15533#0 TATAAGTCA-TGGCATGTACAAATACAA--CAATGCTATTGTAGTGTGGATTTGCGTGAT 745
consensus_15533#3 AAAAAAAAA-AAA----------------------------------------------- 461
consensus_15533#1 TATAAGTCA-TGGCATGTACAAATACAA--CAATGCTATTGTAGTGTGGATTTGCGTGAT 603
consensus_15533#2 TATAAGTCACTGGCATGTACCAATACACACCCATGCTATTGTAGTGTGGATTTGCGTGAT 446
consensus_15533#5 TATAAGTCA-GGGCATGTCCAAATCCAC--CAATGTTATTGTAGTGTGGATTGGCGTGAC 361
consensus_15533#4 AAAAAATAAAGGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 335
* ** *
consensus_15533#0 GCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAGTT 805
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 GCAACTAGGCTGTAATCGATGGCACTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAA 663
consensus_15533#2 GCAACTAGGCTGTAATCGATGGCCCTGTACTGTACATGTGAGAGTAAAGCTTTGGAAAAA 506
consensus_15533#5 GCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 395
consensus_15533#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGA 395
consensus_15533#0 GGATAGTGGTGCAGTATAACAGAGTAGGATCATGATGCATCAGCTATTCAACTGTACTGT 865
consensus_15533#3 ------------------------------------------------------------
consensus_15533#1 AAAAAAA----------------------------------------------------- 670
consensus_15533#2 AAAAA------------------------------------------------------- 511
consensus_15533#5 ------------------------------------------------------------
consensus_15533#4 CGT--------------------------------------------------------- 398
consensus_15533#0 CCAAAAAAAAA 876
consensus_15533#3 -----------
consensus_15533#1 -----------
consensus_15533#2 -----------
consensus_15533#5 -----------
consensus_15533#4 -----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||