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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15537#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1159 fasta sequence
[TTTTTTTTTTTTTTGGGGTTCCTAAGACCATTCACTGGAAATAAGTTTATCCCTAACAAGCACTTTTAAGAGTCTTTAAGAAGGGGCTCTTAACTAAATCTTCACCTCGGAGCTATCCAACTTAGGCCTNTCACAGTGCAAGCTATGGGACCCGTACCCCAGTCCAAAAAATTGGTTCTAAGACACTCACCCCACAGTGCAAGCACTCATATATGTGCGGCTTAATCGGATAGAGGCACTAGTAAATGGTACCAAGCCCACAGTGGGCGTGACCCTAGCTTNCGGACCGATGGAGCGAACGAAAATTTATTTCCTNCACCTACCCCTTNCAGCCCTTCCTCTCTCGCGCGAGACTGATCCTATCCTCGAGTACTACTCCTCTTCTCCTCTCCGCGCCTCTTCTCCTCTCACGCCGGGAGGCGACGGCGCCAGCAGTTGCC-GCCTCGTCGTCATGGTGGCGGCGCCGCCG-CTC-GCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTCCTTCTCCTTCCTCGCCACGACGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCG-CGGTGG-CGGAGGCTCG-ACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTGAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGA-TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGATTTATCGCGTGTTCTTGTGTG]
[-] EMBL AU090645 [TTTTTTTTTTTTTTGGGGTTCCTAAGACCATTCACTGGAAATAAGTTTATCCCTAACAAGCACTTTTAAGAGTCTTTAAGAAGGGGCTCTTAACTAAATCTTCACCTCGGAGCTATCCAACTTAGGCCTNTCACAGTGCAAGCTATGGGACCCGTACCCCAGTCCAAAAAATTGGTTCTAAGACACTCACCCCACAGTGCAAGCACTCATATATGTGCGGCTTAATCGGATAGAGGCACTAGTAAATGGTACCAAGCCCACAGTGGGCGTGACCCTAGCTTNCGGACCGATGGAGCGAACGAAAATTTATTTCCTNCACCTACCCCTTNCAGCCCTTCCTCTCTCGCGCGAGACTGATCCTATCCTCGAGTACTACTCCTCTTCTCCTCTNCGNGCCTCTTCTCCTCTCACGCCGGGAGGCGACGGCGCCAGCAGTTGCC GCCTCGTCGTCATGGTGGCGGCGCCGCCG CTC GCCTNCTTCCCCTCCCTCTCTATCCCTNGCCGTGCCTCCTTCTCCTTCCTNGCCACGACGCCGACGGGAAGCCGNGCCGAGGAGGCGTTCCCGGCNGCGGCGGCTGGCGCCGGTGGCCGGA GCTCGAANCGAGG ]
[+] EMBL AU166992 [ TATCCTCGAGTACTACTCCTCTTCTCCTCTCCGCGCCTCTTCTCCTCTCACGCCGGGAGGCGACGGCGCCAGCAGTTGCCNGCCTCGTCGTCATGGTGGCGGCGCCGCCGCCTC GCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTCCTTCTCCTTCCTCGCCACGACGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCG CGGTGG CGGAGGCTCG ACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTGAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGA TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACC ]
[+] EMBL AU092003 [ AGTACTACTCCTCTTCTCCTCTCCGCGCCTCTTCTCCTCTCACGCCGGGAGGAG CGGCGCCA CAGTTGCC GCCTCGTCGTCATGGTGGCGGCGCCGCCG CTCNGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTCCTTCTCCTTCCTCGCCACGANGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGNG CGGTGG CGGAGGCTCG ACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTGAGGAGGAGCG ]
[+] EMBL CB666619 [ TCCTCTCCGCGCCTCTTCTCCTCTCACGCCGGGAGGCGACGGCGCCAGCAGTTGCC GCCTCGTCGTCATGGTGGCGGCGCCGCCGCCTC GCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTCCTTCTCCTTCCTCGCCACGACGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCG CGGTGG CGGAGGCTCG ACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTGAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGA TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCG ]
[-] EMBL CB666620 [ CCTCTCTATCCCTCGCCGCGCCTCCTTCTCCTTCCTCGCCACGACGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCG CGGTGG CGGAGGCTCG ACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTGAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGA TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTATGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGATTTATCGCGTGTTCT ]
[+] EMBL OSC31702 [ CG CGGTGG CGGAGGCTCG ACCGAGGGACGCCTCCACCNCGGCGACCTCGCCGAGGGAGACCTCGAGCAGCCGCCGCCACCGTNAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCAN TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGNTTCCCCTC ]
[+] EMBL AU091689 [ GCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGA TTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGAaaaa ]
[+] EMBL AU063575 [ AGGAGGAGCGGCGAGCGATTTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGCGNCTTCCTCCCTGTCGACCGCGCCGCTGATCCTNACCCCACCGGTGNCG CGCAGTCAGCTCCGTCATNAATCGACGCGGCGGCGGATGGNTCCGC ]
[-] EMBL C28626 [ aCCCACAGGCGCCGCCGNAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGTCGAGGNCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGANTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGATTTCTCTCGTGTTCTTGTGTG]
consensusID : consensus_15537#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 843 fasta sequence
[GTGAGACTTCTCCTCTCCTCGAGTACTACTCTTCTCCTCTCACGCCGGG-AGGCGACGGCGCTAGCAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCCGCCGCCTTGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCACCTCCTTCTCCTCCCTCACCGCGACGCCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGACGCCTCCACCGCGGCGACCTCGCCGA-GGGAGACCTCGAGCAGCCGCCGTTGCCGCGAGGAGGAGCGAGTGGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGTGAGGAGCGGCGAGTGATTCGAGACAGCGGCGAGGAGGAGTCCCCGAGAAGGCACCGGCGCAACGGTTCCCCTCCCTAAGAAGAGGCATGGCGGAAGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCCCACGCCGCGGCGGCACGGCCTCCTCCCCGTCGACCGTGCCGCTGATCCTGACCCCACCGGCGCCGCCGCGGTCAGCTCCGTCATCGATCGACGCGGCGGCGGACGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCAGCGAGGGCGAAGCGGGTACGGGAACAGTGGACTCTTGTGTGATTCCTCT-CTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCAT-CTTGTGTGATTTCTCTTGTGTTCTTGTGTGATTCCTCTCGTGTTCTTGTGTGATTGGCAACGAAATCGGTGGCGGGAANAGGAGATTTGGGCGTGAAAAAAA]
[+] EMBL AK063237 [GTGAGACTTCTCCTCTCCTCGAGTACTACTCTTCTCCTCTCACGCCGGG AGGCGACGGCGCTAGCAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCCGCCGCCTTGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCACCTCCTTCTCCTCCCTCACCGCGACGCCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGACGCCTCCACCGCGGCGACCTCGCCGA GGGAGACCTCGAGCAGCCGCCGTTGCCGCGAGGAGGAGCGAGTGGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGTGAGGAGCGGCGAGTGATTCGAGACAGCGGCGAGGAGGAGTCCCCGAGAAGGCACCGGCGCAACGGTTCCCCTCCCTAAGAAGAGGCATGGCGGAAGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCCCACGCCGCGGCGGCACGGCCTCCTCCCCGTCGACCGTGCCGCTGATCCTGACCCCACCGGCGCCGCCGCGGTCAGCTCCGTCATCGATCGACGCGGCGGCGGACGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCAGCGAGGGCGAAGCGGGTACGGGAACAGTGGACTCTTGTGTGATTCCTCT CTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCAT CTTGTGTGATTTCTCTTGTG ]
[+] EMBL AU198250 [ TCTCACGCCGGGAAGGCGACGGCGCTAGCAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCCGCCGCCTTGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCACCTCCTTCTCCTCCCTCACCGCGACGCCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGACGCCTCCACCGCGGCGACCTCGCCGA GGGAGACCTCGAGCAGCCGCCGTTGCCGCGAGGAGGAGCGAGTGGGCTGGGCCGGCGGCGGATCTGGCGGACGCGGCGCTCGTCGGCGTGAGGAGCGGCGAGTGATTCGAGACAGCGGCGAGGAGGAGTCCCCGAGAAGGCACCGGCGCAACGGTTCCCCTCCCTAAGAAGAGGCATGGCGGAA ]
[+] EMBL AU162235 [ TCTCACGCCGGG AGG AACGGCGCTA CAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCCGCC CTNTGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCACCTCCTTCTCCTCCCTCACCGCGACGCCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGANGCNTCCACCGCGGCGACCTCGCCGANGGGAGA ]
[+] EMBL AU198251 [ ACGGTTCCCCTCCCTAANAAGAGGCATGGCGGAANCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCCCACGCCGCGGCGGCACGGCCTCCTCCCCGTCGACCGTGCCGCTGATCCTGACCCCACCGGCGCCGCCGCGGTCAGCTCCGTCATCGATCGACGCGGCGGCGGACGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCAGCGAGGGCGAAGCGGGTACGGGAACAGTGGACTCTTGTGTGATTCCTCTCCTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTTTTGGGTGATTCATACTTGTGTGATTTCTCTTGTGTTCTTGTGTGATTCCTCTCGTGTTCTTGTGTGATTGGCAACGAAATCGGTGGCGGGAANAGGAGATTTGGGCGTGAAAAA ]
[+] EMBL C99452 [ CTAAGAAGACGCATGGCGGAAGCGGTGTGGTAGAAGAGGCGGCGCGNCCTCCTCCTCCCACGCCGCGNCGGCACGGCCTCCTCCCCNTCGACCGTGCCNCTGATCCTGACCCCACCGGCGCCGCCGCGGTCAGCTCCGTCATCGATCGACGCGGCGGCGGACGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCAGCGAGGGCGAAGCGGGTACGGGAACAGTGGACTCTTGTGTGATTCCTCT CTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCAT CTTGTGTGATTTCTCTTGTGTTCTTGTGTGATTCCTCTCGTGTTCTTGTGTGATTGGCAACGAAATCGGTGGCGGGAAGAGGAGATTTGGGNGTGAAAAAAA]
consensusID : consensus_15537#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 570 fasta sequence
[CGACCGAAGGGACGCTTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCANCCGCCGCCACCGTNAGGAGGAGCGGGTAGGCTGGGCCGNCGGCGGATCTGGCGAACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGATTCGAGGCANCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTNTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACG-CCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCNCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL AU093227 [CGACCGAAGGGACGCTTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCANCCGCCGCCACCGTNAGGAGGAGCGGGTAGGCTGGGCCGNCGGCGGATCTGGCGAACGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGATTCGAGGCANCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACG CCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGAAAAAAAAAAAA ]
[+] EMBL C99491 [ agCGGCGAGGAGGAGGAGGANTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTNTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGNCCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCNCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL AU092862 [ AAGGTACCGGCGCAACGNTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTNTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCNTCCCACGCCCGCCGCGGCGCGGCCTCCTCCCTNTCGACCGCGCCNCTGATCCTGACCCCACCGGCGCCGCCGNAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGATTTCTCTAAAAAAAAAAAAAAAA ]
[+] EMBL AU070795 [ GGCCTCCTCCTCGCCTCCCACG CCGCCGCGGCGCGGCCTCCTCCCTGTCGACCGCGCCNCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTAAAAAAAAAAAAAAAA ]
[+] EMBL AU166980 [ CTCGCCTCCCACG CCGCCGCGGNGCGGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACANACGGCGGCGAGGACGAANCGGGTGCGGGACAGTGGACTCTTGTGTGATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTCTTGTGTGATTTCTCTAAAAAAAAAAAAAAAA ]
consensusID : consensus_15537#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[AGGAGGAGCGGCGAGCGATTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTNCTCGCCTCCCACGCCGCCNCGGCGCGACTTCCTCCCTGTNGACCGCGCCGCTGATCCTGACCCCANCGGCGCCGCGCANTTCAACTTCGTCATCAAATCGACGCGTTCGGCGGATTGGATTCCACCTTTTTCCGACGGCGGGGGGCGGCGAAGGCGGCGGGGAACAAANGGCGGCGAATGACGAAAAGGGTTCGGGGACAATTG]
[+] EMBL C28297 [AGGAGGAGCGGCGAGCGATTCGAGGCAGCGGCGAGGAGGAGGAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTNCTCGCCTCCCACGCCGCCNCGGCGCGACTTCCTCCCTGTNGACCGCGCCGCTGATCCTGACCCCANCGGCGCCGCGCANTTCAACTTCGTCATCAAATCGACGCGTTCGGCGGATTGGATTCCACCTTTTTCCGACGGCGGGGGGCGGCGAAGGCGGCGGGGAACAAANGGCGGCGAATGACGAAAAGGGTTCGGGGACAATTG]
consensusID : consensus_15537#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[CTCCTCTCCGCGCCTCTTCTCCTCTCACGCNGGGAGGANCGGCGCCANAGTTGCCGCCTCGTCGTCATGGTGGCGGCGCGCCTNNGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTNCTTCTCCTTCCTNGCCACGANGCCGACGGGAAGCCGCGCCGAGGAGGGTCCCCGGCGGCGGCGGCTGGNGCGGTGGCGGAGGTCGACCGAGGGACGCCTCCACCGCGGCGACCTCGCGAGGGAGACCTCGAGCAGCCGCCGCACCGTGAGGAGGAGCGGGTAGGTTGGGCCGGCGCGGATCTTNGCGGACGCGGNGTTCGTCGGCGCGAGGAAGG]
[+] EMBL C73713 [CTCCTCTCCGCGCCTCTTCTCCTCTCACGCNGGGAGGANCGGCGCCANAGTTGCCGCCTCGTCGTCATGGTGGCGGCGCGCCTNNGCCTCCTTCCCCTCCCTCTCTATCCCTCGCCGCGCCTNCTTCTCCTTCCTNGCCACGANGCCGACGGGAAGCCGCGCCGAGGAGGGTCCCCGGCGGCGGCGGCTGGNGCGGTGGCGGAGGTCGACCGAGGGACGCCTCCACCGCGGCGACCTCGCGAGGGAGACCTCGAGCAGCCGCCGCACCGTGAGGAGGAGCGGGTAGGTTGGGCCGGCGCGGATCTTNGCGGACGCGGNGTTCGTCGGCGCGAGGAAGG]
consensusID : consensus_15537#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 250 fasta sequence
[GANAGNAACTGGCGCTANAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCGCNTNTGCCTCCTTCCCCTCCCTCTCTATCCCTCGNCGCACCTCCTTCTCCTCCCTCACCGCGACGNCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGACGTCTCCACCGCGGCGACCTCGCGAGGGAGACCTCGAGCAGCCGNCGTTGCCGCGAGGAGG]
[+] EMBL AU164277 [GANAGNAACTGGCGCTANAGTTGCCGCCTCGTTGTCGTGGTGGCGGCGCGCNTNTGCCTCCTTCCCCTCCCTCTCTATCCCTCGNCGCACCTCCTTCTCCTCCCTCACCGCGACGNCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTGGCGCGGTGGCGGAGGCTCGACCGGGGGACGTCTCCACCGCGGCGACCTCGCGAGGGAGACCTCGAGCAGCCGNCGTTGCCGCGAGGAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 TTTTTTTTTTTTTTGGGGTTCCTAAGACCATTCACTGGAAATAAGTTTATCCCTAACAAG 60
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 CACTTTTAAGAGTCTTTAAGAAGGGGCTCTTAACTAAATCTTCACCTCGGAGCTATCCAA 120
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 CTTAGGCCTNTCACAGTGCAAGCTATGGGACCCGTACCCCAGTCCAAAAAATTGGTTCTA 180
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 AGACACTCACCCCACAGTGCAAGCACTCATATATGTGCGGCTTAATCGGATAGAGGCACT 240
consensus_15537#2 ----------------------------------------------------CGACCGAA 8
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 AGTAAATGGTACCAAGCCCACAGTGGGCGTGACCCTAGCTTNCGGACCGATGGAGCGAAC 300
consensus_15537#2 GGGACGCTTCCACCGCGGCGACCTCGCCGAGGGAGACCTCGAGCANCCGCCGCCACCGTN 68
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ------------------------------------------------------------
consensus_15537#0 GAAAATTTATTTCCTNCACCTACCCCTTNCAGCCCTTCCTCTCTCGCGCGAGACTGATCC 360
consensus_15537#2 AGGAGGAGCGGGTAGGCTGGGCCGNCGGCGGATCTGGCGAACGCGGCGCTCGTCGGCGCG 128
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 -----------------------CTCCTCTCCGCGCCTCTTCTCCTCTCACGCNGGGAGG 37
consensus_15537#5 -----------------------------------------------------GANAGNA 7
consensus_15537#1 --------GTGAGACTTCTCCTCTCCTCGAGTACTACTCTTCTCCTCTCACGCCGGGAGG 52
consensus_15537#0 TATCCTCGAGTACTACTCCTCTTCTCCTCTCCGCGCCTCTTCTCCTCTCACGCCGGGAGG 420
consensus_15537#2 AGGAGGAGCGGCGAGCGATTCGAGGCANCGGCGAGGAGGAGGAGGAGTC-CCCGGGAAGG 187
consensus_15537#3 AGGAGGAGCGGCGAGCGATTCGAGGCAGCGGCGAGGAGGAGGAGGAGTC-CCCGGGAAGG 59
consensus_15537#4 -ANCGGCGCCAN-AGTTGCCGCCTC-------GTCGTCATGGTGGCGGCGC-GCC----- 82
consensus_15537#5 -ACTGGCGCTAN-AGTTGCCGCCTC-------GTTGTCGTGGTGGCGGCGC-GCN----- 52
consensus_15537#1 CGACGGCGCTAGCAGTTGCCGCCTC-------GTTGTCGTGGTGGCGGCGCCGCCGC--- 102
consensus_15537#0 CGACGGCGCCAGCAGTTGCCGCCTC-------GTCGTCATGGTGGCGGCGCCGCCG---- 469
consensus_15537#2 CACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTNTGGTAGAAGA 247
consensus_15537#3 CACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGGAGGCGGTGTGGTAGAAGA 119
***** * * ** ** * * ** ***** *
consensus_15537#4 ---TNNGCCTCCTTCCCCTCCCTCTCTATCCC-TCGCCGCGCCTNCTTCTCCTTCCTNGC 138
consensus_15537#5 ---TNTGCCTCCTTCCCCTCCCTCTCTATCCC-TCGNCGCACCTCCTTCTCCTCCCTCAC 108
consensus_15537#1 ---CTTGCCTCCTTCCCCTCCCTCTCTATCCC-TCGCCGCACCTCCTTCTCCTCCCTCAC 158
consensus_15537#0 ---CTCGCCTCCTTCCCCTCCCTCTCTATCCC-TCGCCGCGCCTCCTTCTCCTTCCTCGC 525
consensus_15537#2 GGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGCGGCCTCCTCCCTGTCGAC 307
consensus_15537#3 GGCGGCGCGGCCTCCTNCTCGCCTCCCACGCCGCCNCGGCGCGACTTCCTCCCTGTNGAC 179
** *** * *** * * * ** * ** * * **** *
consensus_15537#4 CACGANGCCGACGGGAAGCCGCGCCGAGGAGG-GTCCCCGGCGGCGGCGGCTG-GNGCGG 196
consensus_15537#5 CGCGACGNCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTG-GCGCGG 167
consensus_15537#1 CGCGACGCCGACGGGAAGCCGCGGCGAGGAGGCGTCCCCGGCGGCGGCGGCTG-GCGCGG 217
consensus_15537#0 CACGACGCCGACGGGAAGCCGCGCCGAGGAGGCGTCCCCGGCGGCGGCGGCTG-GCGCGG 584
consensus_15537#2 CGCGCCNCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGCTCCGTCATCAA-TCGACG 366
consensus_15537#3 CGCGCCGCTGATCCTGACCCCANCGGCGCCGCGCANTTCAACTTCGTCATCAAATCGACG 239
* ** ** * ** * * * * * ** * * * *
consensus_15537#4 TGG-CGGAGG-TCGACCGAGGGACGCCTCCACCGCGGCGACCTCGC-GAGGGAGACCTCG 253
consensus_15537#5 TGG-CGGAGGCTCGACCGGGGGACGTCTCCACCGCGGCGACCTCGC-GAGGGAGACCTCG 225
consensus_15537#1 TGG-CGGAGGCTCGACCGGGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCG 276
consensus_15537#0 TGG-CGGAGGCTCGACCGAGGGACGCCTCCACCGCGGCGACCTCGCCGAGGGAGACCTCG 643
consensus_15537#2 CGG-CGGCGGAT-GGATCCG--CCTTTCCCGACGGCGGGGG-CGGC-GAGGGCGGCGGG- 419
consensus_15537#3 CGTTCGGCGGATTGGATTCCACCTTTTTCCGACGGCGGGGGGCGGC-GAAGGCGGCGGGG 298
* *** ** * * ** ** * * ** ** ** * *
consensus_15537#4 AGCAGCCGCCGC-ACCGTGAGGAGGAGCGGGTAGGTTGGGCCGGCGCGGATCTTNGCGGA 312
consensus_15537#5 AGCAGCCGNCGTTGCCGCGAGGAGG----------------------------------- 250
consensus_15537#1 AGCAGCCGCCGTTGCCGCGAGGAGGAGCGAGTGGGCTGGGCCGGCGGCGGATCTGGCGGA 336
consensus_15537#0 AGCAGCCGCCGCCACCGTGAGGAGGAGCGGGTAGGCTGGGCCGGCGGCGGATCTGGCGGA 703
consensus_15537#2 AACAGACGGCGGCGA-G-GACGAAGCGGGTGCGGG-ACAGTGGACTCTTGTGTGATTCCT 476
consensus_15537#3 AACAAANGGCGGCGA-ATGACGAAAAGGGTTCGGGGACAATTG----------------- 340
* ** * ** ** **
consensus_15537#4 CGCGGNGTTCGTCGGCGCGAGGAAGG---------------------------------- 338
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 CGCGGCGCTCGTCGGCGTGAGGAGCGGCGAGTGATTCGAGACAGCGGCGAGGAGGAGTCC 396
consensus_15537#0 CGCGGCGCTCGTCGGCGCGAGGAGGAGCGGCGAGCGATTCGAGGCAGCGGCGAGGAGGAG 763
consensus_15537#2 CTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTTC 536
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 CCGAGAAGGCACCGGCGCAACGGTTCCCCTCCCTAAGAAGAGGCATGGCGGAAGCGGTGT 456
consensus_15537#0 GAGGAGTCCCCGGGAAGGCACCGGCGCAACGGTTCCCCTCCCCAAGAAGAGGCACGGCGG 823
consensus_15537#2 TTGTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAC-------------------------- 570
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 GGTAGAAGAGGCGGCGCGGCCTCCTCCTCCCACGCCGCGGCGGCACGGCCTCCTCCCCGT 516
consensus_15537#0 AGGCGGTGTGGTAGAAGAGGCGGCGCGGCCTCCTCCTCGCCTCCCACGCCGCCGCGGCGC 883
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 CGACCGTGCCGCTGATCCTGACCCCACCGGCGCCGCCGCGGTCAGCTCCGTCATCGATCG 576
consensus_15537#0 GGCCTCCTCCCTGTCGACCGCGCCGCTGATCCTGACCCCACCGGCGCCGCCGCAGTCAGC 943
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 ACGCGGCGGCGGACGGATCCGCCTTTCCCGACGGCGGGGGCGGCGAGGGCGGCGGGAACA 636
consensus_15537#0 TCCGTCATCAATCGACGCGGCGGCGGATGGATCCGCCTTTCCCGACGGCGGGGGCGGCGA 1003
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 GACGGCAGCGAGGGCGAAGCGGGTACGGGAACAGTGGACTCTTGTGTGATTCCTCTCTGT 696
consensus_15537#0 GGGCGGCGGGAACAGACGGCGGCGAGGACGAAGCGGGTGCGGGACAGTGGACTCTTGTGT 1063
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 GTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCTTGTGTGATTTCTC 756
consensus_15537#0 GATTCCTCTTTGTGTTCTTGTGTGATTCCTCTCCTCTTTGTGTTCTTGGGTGATTCATCT 1123
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ------------------------------------------------------------
consensus_15537#5 ------------------------------------------------------------
consensus_15537#1 TTGTGTTCTTGTGTGATTCCTCTCGTGTTCTTGTGTGATTGGCAACGAAATCGGTGGCGG 816
consensus_15537#0 TGTGTTCTTGTGTGATTTATCGCGTGTTCTTGTGTG------------------------ 1159
consensus_15537#2 ------------------------------------------------------------
consensus_15537#3 ------------------------------------------------------------
consensus_15537#4 ---------------------------
consensus_15537#5 ---------------------------
consensus_15537#1 GAANAGGAGATTTGGGCGTGAAAAAAA 843
consensus_15537#0 ---------------------------
consensus_15537#2 ---------------------------
consensus_15537#3 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||