These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1019 fasta sequence [CCTATCAGAGAAGCAGAGCCCGAGTAGAAA---ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG-GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT-GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT-GGTATACTTAGCCACAACAAACAAGCAGAGCAA-CC-AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT-CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT-CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT] [+] EMBL CF302061 [CCTATCAGAGAAGCAGAGCCCACAAAGAAC ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTGNGGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GG ] [+] EMBL CF296590 [ gaagGAGTAGAAA ACTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGTACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACT ] [+] EMBL CF292924 [ GAGTAGAAAAACACTTTGCCCACACCATTCACAGCTCTCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT ] [+] EMBL CF292626 [ CTCTGCCCACACCATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATNTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAAT ] [+] EMBL AK068709 [ CATTCACAGCTCGCATCGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT] [+] EMBL CF294104 [ CGCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGTGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GG ] [+] EMBL CF292937 [ GCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAAC ] [+] EMBL AU031911 [ AACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGGTATACTTAGCCACAACAAACAAGCAGAGCAACCC AAAACTACCTTGGTCCTGNACCGCTGGAA ] [+] EMBL OSR24241A [ ACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTNTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGC ] [+] EMBL AK104134 [ CACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCTG GGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTTTAT] [-] EMBL CK085216 [ ATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAaaaaa ] [-] EMBL CF294103 [ AGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CCAAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAaa ] [-] EMBL CF292923 [ AGCAATATGATGAGAAGATTTACCTTGATTTGTATAT GGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGAT GGTATACTTAGCCACAACAAACAAGCAGAGCAA CC AAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAAAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAaaaa ] [-] EMBL CF296591 [ GAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAa ] [+] EMBL AU031912 [ aAATTTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAaaaaaa ] [+] EMBL AU173362 [ AGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGAT CCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTAT CCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAaaaaaa ] consensusID : consensus_15554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 809 fasta sequence [CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG-AGTTCCCCG-GGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT-GTTTGTGATATGCAAAAT-GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATGAATCTCTT] [+] EMBL CB621128 [CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG AGTTCCCCG GGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT GTTTGTGATATGCAAAAT GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATGAATCTCTT] [+] EMBL AU056816 [ ACCGGAGCAGCCGGGAGCGCGGAGGCCATGGCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGG AGTTCCCCG GGAGGACCGTCACGCTCGAGCACNAGCCCGGCGCCACATNCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATNTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCAGATAATCAGATGTGTACTTGTAATCCTGTATCCNAACTTCCTAAGGTATTTAAGAATGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCANTGAGATACCGAGATCGATCTGAACNCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTTGGTTTGTGATATGCAAAATGGGACTAATGATCTCATAGCTAa ] [+] EMBL CB675833 [ GCGATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCGCCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAGGGGCACGCCGGTAGTTCCCCGCGGAGGACCGTCACGCTCGAGCACCAGCCCGGCGCCACATGCGTAACGCTTCTCTCTCATATGTTCTTTGTTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTACATTATGCTTTAAGATGCTTCTTTGTTGTTGTTGTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTGAGGTACTACTGGTCAGCCATGCTAATAAGGAGTAAGTATGAGTTTGTGTATCAGTGATCGGATGAAAACAATGATCATCACATAATCAGATGTGTACTTGTAATCCTGTATCCTAACTTCCTAAGGTATTTAAGAGTGGGCTATAAGGGGAGACCTTTCTGCAGTAATGGTAAAAGAGTGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATGGTCATTGAGATACCGAGATCGATCTGAACTCTGAAGGGTGGTACAAATGGTAAAAAAGGAGCTT GTTTGTGATATGCAAAAT GGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCATCTTTTTATGCTGTTCTGCAGGCCAAGTAACCCTGTTCTCAGTGCATACATTGAATTTGTAAATG ] consensusID : consensus_15554#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence [ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGATATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCTTTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAAACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB675834 [ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGATATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCTTTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAAACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATCTGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCTCACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTC ] [-] EMBL CF292625 [ CAGAGCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAGCTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTTTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF292938 [ GAGTACCTGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_15554#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AATTCGGCACGAGGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAAAA] [+] EMBL CA754049 [AATTCGGCACGAGGTTCAAACTTGAGGATGCATTGAACAAAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCCAGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATATAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACAGCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTTAAGTTGGGGGTATGAAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTACTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGTCTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15554#2 ------------------------------------------------------------ consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 CCTATCAGAGAAGCAGAGCCCGAGTAGAAAACTCTGCCCACACCATTCACAGCTCGCATC 60 consensus_15554#1 ------------------------------------------------------------ consensus_15554#2 ------------------------------------------------------------ consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 GCACGCGGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGC 120 consensus_15554#1 -CACCCTGCGCAACCAATACGCCATTCCACCGGAGCAGCCGGGAGCGCGGAGGCCATGGC 59 consensus_15554#2 ---------------ATATGATTCAATATAGCCAAATGATAACTACTCTGAAAATGCGAT 45 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 GATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCG 180 consensus_15554#1 GATGTGGGTGTTCGGGTACGGGTCCCTGGTCTGGAACCCCGGCTTCGCGCACGACGCCCG 119 consensus_15554#2 ATTGTCCCAGATGGTCATCTGAATGAACTCAGATAAATGTTATCTAGATGCCATCCCTCT 105 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 CCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAG 240 consensus_15554#1 CCTCGTCGGCTTCGTCAGGGACTACCGCCGCGTCTTCTACCAGGGGAGCACGGACCACAG 179 consensus_15554#2 TTATGGGCCTTATGGCAGCCTGAGAACTGAAGTAACAATACCTTAATCAGTGCTTTATAA 165 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 GGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCG-GCGCCACAT 299 consensus_15554#1 GGGCACGCCGGAGTTCCCCGGGAGGACCGTCACGCTCGAGCACCAGCCCG-GCGCCACAT 238 consensus_15554#2 ACTGACTTTCAGTTGCTTACCTTGCTTGCATATTTACCTTCAGATTTGAATTGCAGCATC 225 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 GCTGGGGTGTTGCTTACAAAATTTCAACGGAACAAGATAAGCAGACAGCTCTGGAGCATC 359 consensus_15554#1 GCGTAACGCTTCTCTCTCATATGTTCTT------------------------------TG 268 consensus_15554#2 TGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCT 285 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 TGGAAGTAAGAGAGAAGCAATATGATGAGAAGATTTACCTTGATTTGTATATGGACTCCT 419 consensus_15554#1 TTGATGTGCTACGCGACTTGCTAATCGTTAATCCTTGTGTTGAATTGAGCATGGATTAC- 327 consensus_15554#2 CACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGA 345 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 CACCAAAAACACCAGCCGTCAAAAATGTGATGGTATACTTAGCCACAACAAACAAGCAGA 479 consensus_15554#1 ---------------------ATTATGCTTTAAGATGCTTCTTTGTTGT-------TGTT 359 consensus_15554#2 GCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAG 405 consensus_15554#3 ------------------------------------------------------------ consensus_15554#0 GCAACCAAAACTACCTTGGTCCTGCACCGCTGGAAGAAATGGCCAAGCAAATTTACCTAG 539 consensus_15554#1 GTTGTTGTTGATATCTTTATTTCGGTACATCTGTGAAACTG---AGGTACTACTGGTCAG 416 consensus_15554#2 CTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACA 465 consensus_15554#3 ---------------AATTCGGCACGAGGT------TCAAACTTGAGGATGCATTGAACA 39 consensus_15554#0 CTGAAGGCCCATCTGGACCTAACAAAGAGTACCTGTTCAAACTTGAGGATGCATTGAACA 599 consensus_15554#1 CC--ATGCTAATAAGGAGTAAGTATGAGTT------TGTGTATCAGTGATCGGATGAAAA 468 * * * * * *** **** * consensus_15554#2 AAATAGGAGTTGTTGATCCACATGTCCAGGATTTGGCAAATGCTGTGCGCAAGTATCC-- 523 consensus_15554#3 AAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCC-- 97 consensus_15554#0 AAATAGGAGTTGTTGATCCACATGTCCAGGATCTGGCAAATGCTGTGCGCAAGTATCC-- 657 consensus_15554#1 CAATGATCATCAGATAATCAGATGT---GTACTTG--TAATCCTGTATCCTAACTTCCTA 523 *** * * ** **** * * ** *** **** * * *** consensus_15554#2 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 583 consensus_15554#3 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 157 consensus_15554#0 AGACACTGCGGTATCTTGCTGAAGGATGGCATTTCCCTCCTCTTTGGGAGGGTAAAAATA 717 consensus_15554#1 AGGTATTTAAGAATGG-GCTATAAGGGGAGACCTTTCTGCAGT----AATGGTAAAAGAG 578 ** * * * ** *** * * * * * ** * * * ******* consensus_15554#2 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 643 consensus_15554#3 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 217 consensus_15554#0 TAACTGAAGGAAGTTAGATCAATTCATGCTCAAACATCTTGAATCTTGTAAATGTGGACA 777 consensus_15554#1 TGGCACTGAGACTCTCTTGCAGTCCAAATTAAAATG-----------GTCATTGAGA--- 624 * * ** * ** * ** * *** ** * ** * consensus_15554#2 GCTTCTGCCGATATTTTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 703 consensus_15554#3 GCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 277 consensus_15554#0 GCTTCTGCCGATATTCTTGTCCATCTGTAGATGGCAGTAGAAAATTCGCAATAAGGATTT 837 consensus_15554#1 -----TACCGAGATCGATCTG-AACTCTGAAGGGTGGTACAAA--TGGTAAAAAAGGAGC 676 * **** ** * * * ** * * ** *** *** * * ** ** * consensus_15554#2 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 762 consensus_15554#3 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 336 consensus_15554#0 AAGTTGGGGGTATG-AAAACTGCCACATTACTGCGTTGGGAATCAAACCCTTCTTTTTTA 896 consensus_15554#1 TTGTTTGTGATATGCAAAATGGACTAATGATCTCATAGCTATTTGGCATGTTCTCTTCCA 736 *** * * **** **** * * ** * * * * * * **** ** * consensus_15554#2 CTTTCAAAAAAAAAAAAA--------------AAAAAAAAAAAAAA-------------- 794 consensus_15554#3 CTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGT 396 consensus_15554#0 CTTTCAAAACAAGATTGTTCTCTACTTCTCTTATATTGAAGCATAATCACTGTGCATGGT 956 consensus_15554#1 TCTTT----TTATGCTGTTCTGCAGGC------CAAGTAACCCTGTTCTCAGTGCATACA 786 ** * * ** consensus_15554#2 ------------------------------------------------------------ consensus_15554#3 CTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTAAAAAAAAAAA 456 consensus_15554#0 CTAGTTAGCTGCAGCCTGCAGGCTTGGTCACTCGACCATGCTTTGTCGTATAAAATGTTT 1016 consensus_15554#1 TTGA--ATTTGTAAATGAATCTCTT----------------------------------- 809 consensus_15554#2 --- consensus_15554#3 AA- 458 consensus_15554#0 TAT 1019 consensus_15554#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||