These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15562#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1144 fasta sequence [AACCGAAATCCCCTCCTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCGCCGGGCG-CCGGAGATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCAGCTGC-TCCTCACCACCGCCGTCTCCGCGCTCACCGTCCTCCACCCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCCTCGTGCTCGCCGTCCTCCCCTTCGTCCTGATGGT-CCCATTGTATCATTATC-AGCACAAACACCCAC-ACAACTTTGTTTACCT-GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC-ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG-CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT-GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG-CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT-ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT-GTTGAGCT-CTACC-TTGACATCC-TCAACTTGTTCCTTT-AT-A-TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA-TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA-CTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAATAATTTTTA-CCCTGCGATGTTCGTGAAAAAAAGAAAAAAA] [+] EMBL AU094031 [AACCGAAATCCCCTCCTGACCTCCTTCCTCCTCTCTNCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCG CGGNCG CCGGAGATGAAGGAGAAGGTGGACNCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCA NTGC TCCTCACCACCGCCGTCTCCGCGCTCACCGTCCTCCACNCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCCTCGTGCTCG ] [+] EMBL AK070043 [ AAATCCCCTCCTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCGCCGGGCG CCGGAGATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCAGCTGC TCCTCACCACCGCCGTCTCCGCGCTCACCGTCCTCCACCCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCCTCGTGCTCGCCGTCCTCCCCTTCGTCCTGATGGT CCCATTGTATCATTATC AGCACAAACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTG ] [+] EMBL AK104366 [ AATCCCCTCCTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCGCCGGGCG CCGGAGATGAAGGAGAAGGTGGGCGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCAGCTGC TCCTCACCACCGCCGTCTCCGCGCTCACCGTCCTCCACCCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCCTCGTGCTCGCCGTCCTCCCCTTCGTCCTGATGGT CCCATTGTATCATTATC AGCACAAACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTT ] [+] EMBL AK104199 [ AATCCCCTCCTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCGCCGGGCG CCGGAGATGAAGGAGAAGGTGGGCGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCAGCTGC TCCTCACCACCGCCGTCTCCGCGCTCACCGTCCTCCACCCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCCTCGTGCTCGCCGTCCTCCCCTTCGTCCTGATGGT CCCATTGTATCATTATC AGCACAAACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTT ] [+] EMBL AU070225 [ CTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCG GGACGACCGGAGATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCNCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAANGTGTACn ] [+] EMBL C71823 [ TGACCTCCTTCCTCCTCTNTCCCCGATTCCCCCCACCCACCNACCAAGCGCGTCGGAAGCNATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTACCGCCNGNC CCGGANATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAA GTGTACGGCATCCTCGCCGCG AG TGC TCCTNACCACC ] [+] EMBL AU184524 [ ACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGNTGGCCCCGGCGGGCTACCGCCGGGCG CCGGAGATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCGGCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGCAAGGTGTACGGCATNCTCGCCGCGC ] [+] EMBL OSC31182 [ CCTCCTCTCTCCCCGATTCCCCCCACCCACCCACCAAGCGCGTCGGAAGCGATGGCGTNGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCTA NACNGGNAGNCCGGAGATGAAGGAGAAGGTGGACGNCTCCGCGGTGGACCTGGAGGCCGGNACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGTTCGTCCGAAAGGTGTACGGCATCCTCGCCGCGAAG TGCTTCCTCACCACCGCCGTNTCCGGGNTAACCGTCCTCCA CCCAACCTNAACGg ] [+] EMBL AU094032 [ ctTTCGTCCTGATGGTCCCCATGGTNTCATTATCAAGCAC AACACCCACAACAACTTTGTTTACCTGGGGTCTGTTCACGTTGTGCTTGAGTTNCAGTATTGGTGTGGCATGTGCTAACNACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTAaaa aa ] [+] EMBL C72853 [ TATCATTATC AGCACAAACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTGGTCCCTTA AN A NCCNGAACATGATCAGGAGCATGCc ] [+] EMBL OSS2692A [ ctanAACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTG ] [+] EMBL OSS2634A [ caagacACACCCAC ACAACTTTGTTTACCT GGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTGTGGCATGTGCTAAC ACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATC ] [+] EMBL BI800088 [ CTTGA GCA TAATATTGACCTCAGCTGTGGTTGCCTCTGTGACTGCGTATACTTTCTGGG CTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCT GTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGGCCTCTGGACCAGTTGCATTGTTT GTGGCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCT ACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTTTTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGC ATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTC AAGGATGAGACCGAAGTAC ATATATGTATAGTTTTGGTTGTGTTGAGTATGACCTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAAAAAaaa ] [+] EMBL BI806307 [ GTATACTTTCTGGGCCTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCCATTCTGGTTTTCTGCTCTTTGTTTACGTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGG CTCTGGACCAGTTGCATTGTTTGGT GCCTTGGAGCTTTAGTTTTCTCAGGTTTCATCATCTGACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTTGAN A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTTTTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACA CCATCTATATAACCGTGAAAACCTCGTGATGTATTTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTT GTT T TTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTGACGTGGT CC ATAATTTTTACCCCTGCGATGTTCGTGAAAAAA ] [+] EMBL AA749749 [ TGACGACTACATTTGGGCCTCT GTTGAGCT CTACC TTGACATCC TCAACTTGTTCCTTT AT A TCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCATGGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCAATCTATATAACCGTGAAAACCTCGTGATGTA TTTTG ] [+] EMBL AU033086 [ TTGGGCCTCTAGNTGCGCT CTCCC TTGACATCC TCAACTTGTNCCTTT AT ATTCCTNACCATGATCAGGAGCATGCAAAGTNATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAATAATTTTTA CCCTGCGATGNTCGTGAAAAAAAGNAAAAAA] [+] EMBL AU097159 [ CCTCT GTTGAGCTNCTACCTTTGACATCCTTCAACTTGTCCCTTT ATNATTCCTGAACATGATCAGGAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAATAATTTTTA CCCTGCGATGTTCGTGAAAAAAAGAAAAA ] [+] EMBL AU173812 [ GGAGCATGCAAAGTNATAACTAGCCAGTCCATCAGCNCCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTNTATTAAGTACTATTTTGAACAGCGATNTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTNTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAATAATTTTTA CCCTGCGATGTTNGTGAAAAAAAAAAAA ] [+] EMBL C99025 [ cgGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTA TTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAGTATGA CTGTCGGAAATGTGATCCCATGATTGTGACGTGGTGCCAATAAaaaa ] consensusID : consensus_15562#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [TGGTGAATTAAACCGTTTTATTGCAGGGTGGTGCTTGCCCATTGGGCTGCTGGACCAAGTTGCATTTGGTTTTGGGTGCCCTTGGGGAGCTTTAGTGTTTTGCTCCAGGTTTGCAATGCATGCTGACGGACACCAGGAGAACTTGGATGATAAGCGCCAACAACTGTGATGGACGACTGACAATTTGGGGCACTGCTGGTTGGAGCTGCTGACCTGTGACAATGCCTGCAAACTGTGGTGTGCACTGTGTATGATGCCTGGAACAATGGATGCAGGAGCAATGGCAAAGTGGATGAACTGAGCCAAGTGCCATGCCAAGCACCAAACCAGACGTTTGTGTGCAAACTTGGCTGCCAGTGACAGTGCAGTGGTGGTGCACTGGCTGCTGATTGAAGTGACTGATGTTTGGAACAAGCAATGCTGATGATGAACCGTGGAAAACCTGCGTGGATGTGATTTTCCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACATATATGTATATTTTGGTTGTTTGAGTATGACTGTCGGAAATGTGATCCCATGATTGTGACGTGGTCCAAAAAAAA] [+] EMBL BI797853 [TGGTGAATTAAACCGTTTTATTGCAGGGTGGTGCTTGCCCATTGGGCTGCTGGACCAAGTTGCATTTGGTTTTGGGTGCCCTTGGGGAGCTTTAGTGTTTTGCTCCAGGTTTGCAATGCATGCTGACGGACACCAGGAGAACTTGGATGATAAGCGCCAACAACTGTGATGGACGACTGACAATTTGGGGCACTGCTGGTTGGAGCTGCTGACCTGTGACAATGCCTGCAAACTGTGGTGTGCACTGTGTATGATGCCTGGAACAATGGATGCAGGAGCAATGGCAAAGTGGATGAACTGAGCCAAGTGCCATGCCAAGCACCAAACCAGACGTTTGTGTGCAAACTTGGCTGCCAGTGACAGTGCAGTGGTGGTGCACTGGCTGCTGATTGAAGTGACTGATGTTTGGAACAAGCAATGCTGATGATGAACCGTGGAAAACCTGCGTGGATGTGATTTTCCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACATATATGTATATTTTGGTTGTTTGAGTATGACTGTCGGAAATGTGATCCCATGATTGTGACGTGGTCCAAAAAAAA] consensusID : consensus_15562#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [GGCATGTCTAACACTCAAGGGAAAATGTGCTGGAGCCATTAATATTGACCTCACTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGGCTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCTGTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGGCTCTGGACCATTTGCATTGTTTTGGTGCCCTTGGGAGCTTTAGTTTTCTCAGGTTTCAATCATCTACGACACAGAGAACTTGATAAGCCCACACTTATGACGACTACATTTGGCCTCTGTTGAGCTCTACCTGACATCCTCAACTGTTCTTAGATCCGAACATGAATTCAGGACATCAATAATACCATCATCACACAACAACTTTTCACTTCAACTCACCCTCCCCTTATAATATTTGACACATAAACCTGAACCTATTATTTCTCTTACTCAAGATGAACAACAAAAAATTCCCCTGATACC] [+] EMBL BI805365 [GGCATGTCTAACACTCAAGGGAAAATGTGCTGGAGCCATTAATATTGACCTCACTGTGGTTGCCTCTTTGACTGCGTATACTTTCTGGGCTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCTGTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGGTGTTCTTCCCATTGGGCTCTGGACCATTTGCATTGTTTTGGTGCCCTTGGGAGCTTTAGTTTTCTCAGGTTTCAATCATCTACGACACAGAGAACTTGATAAGCCCACACTTATGACGACTACATTTGGCCTCTGTTGAGCTCTACCTGACATCCTCAACTGTTCTTAGATCCGAACATGAATTCAGGACATCAATAATACCATCATCACACAACAACTTTTCACTTCAACTCACCCTCCCCTTATAATATTTGACACATAAACCTGAACCTATTATTTCTCTTACTCAAGATGAACAACAAAAAATTCCCCTGATACC] consensusID : consensus_15562#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [CATTTGGGCCTCTGTTGAGCTCTACCTTGACATCCTCAACTTGTTCCTTTATATCCTGAACATGATCAGGNGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTATTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU094090 [CATTTGGGCCTCTGTTGAGCTCTACCTTGACATCCTCAACTTGTTCCTTTATATCCTGAACATGATCAGGNGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTATTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15562#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [ACTGACATGGACTGAGGAGTAGAAAAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTATTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329447 [ACTGACATGGACTGAGGAGTAGAAAAGCATGCAAAGTGATAACTAGCCAGTCCATCAGCACCAACCAGACGTATTGTCAACTTGCTCAGTGACGTCAGTGTGTCCTGCTCTATTAAGTACTATTTTGAACAGCGATCTATATAACCGTGAAAACCTCGTGATGTATTTTGCTGTCGTCTGACTCAAAGGATGAGACCGAAGTACAATATATGTATAGTTTTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 AACCGAAATCCCCTCCTGACCTCCTTCCTCCTCTCTCCCCGATTCCCCCCACCCACCCAC 60 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 CAAGCGCGTCGGAAGCGATGGCGTCGGCGGCGGAGATGCAGCCGCTGGCCCCGGCGGGCT 120 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 ACCGCCGGGCGCCGGAGATGAAGGAGAAGGTGGACGCCTCCGCGGTGGACCTGGAGGCCG 180 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 GCACCGGGGAGACGCTGTACCCGGGGATCTCGCGCGGGGAGAGCGCCCTCCGGTGGGGGT 240 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 TCGTCCGCAAGGTGTACGGCATCCTCGCCGCGCAGCTGCTCCTCACCACCGCCGTCTCCG 300 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 CGCTCACCGTCCTCCACCCCACCCTCAACGCCACGCTCTCCTCCTCCCCGACCCTCGCCC 360 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 TCGTGCTCGCCGTCCTCCCCTTCGTCCTGATGGTCCCATTGTATCATTATCAGCACAAAC 420 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 ACCCACACAACTTTGTTTACCTGGGTCTGTTCACGTTGTGCTTGAGTTTCAGTATTGGTG 480 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 ------------------------------------------------------------ consensus_15562#0 TGGCATGTGCTAACACTCAAGGGAAAATTGTGCTTGAGGCATTAATATTGACCTCAGCTG 540 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 -------------------------------TGGTGAATTAAACCGTTTTATTGCAGGGT 29 consensus_15562#0 TGGTTGCCTCTTTGACTGCGTATACTTTCTGGGCTTCAAAGAAGGGGAAAGAATTTGGTT 600 consensus_15562#2 ------------------------------------------------------------ consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 GGTGCTTGCCCATTGGGCTGCTGGACCAAGTTGCATTTGGTTTTGGGTGCCCT---TGGG 86 consensus_15562#0 ATCTTGGACCAATTCTGTTTTCTGCTCTTGTTTTACTTGTTGTGATAAGCTTTATTCAGG 660 consensus_15562#2 -----------------------------------------GGCATGTCTAACACTCAAG 19 consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 GAGCTTTAGTGTTTTGCTCCAGGTTTGCAATGCATGCTGACGGACACCAGGAG--AACTT 144 consensus_15562#0 TGTTCTTCCCATTGGGCTCTGGACCAGTTGCATTGTTTGGTGGCCTTGGAGCTTTAGTTT 720 consensus_15562#2 GGAAAATGTGCTGGAGCCATTAATATTGACCTCACTGTGGTTGCCTCTTTGACTGCGTAT 79 consensus_15562#3 ------------------------------------------------------------ consensus_15562#4 ------------------------------------------------------------ consensus_15562#1 GGATGATAAGCGCCAACAACTGTGATGGACGACTGACAATTTGGGGCACTGCTG--GTTG 202 consensus_15562#0 TCTCAGGTTTCATCATCTACGACACAGAGAACTTGATAAAGCGCCACACTTATGACGACT 780 consensus_15562#2 ACTTTCTGGGCTTCAAAGAAGGGGAAAGAATTTGGTTATCTTGGACCAATTCTGTTTTCT 139 consensus_15562#3 -CATTTGGGCCTCTGTTGAGCTCTACCTTGACATCCTCAACTTGTTCCTTTATATCCTGA 59 consensus_15562#4 ---------------------------------------------ACTGACATGGACTGA 15 consensus_15562#1 GAGCTGCTGACCTGTGACAATGCCTGCAAACTGTGGTGTGCACTGTGTATGATGCCTGGA 262 consensus_15562#0 ACATTTGGGCCTCTGTTGAGCTCTACCTTGACATCCTCAACTTGTTCCTTTATATCCTGA 840 consensus_15562#2 GCTCTTGTTTTACTTGTTGTGATAAGCTTTAT-TCAGGTGTTCTTCCCATTGGGCTCTGG 198 * consensus_15562#3 ACATGATC---AGGNGCAT----GCAAAGTGAT--AACT-AGCCAGT--CCATC---AGC 104 consensus_15562#4 GGAGTAG----AAAAGCAT----GCAAAGTGAT--AACT-AGCCAGT--CCATC---AGC 59 consensus_15562#1 ACAATGGATGCAGGAGCAATG--GCAAAGTGGATGAACTGAGCCAAGTGCCATGCCAAGC 320 consensus_15562#0 ACATGATC---AGGAGCAT----GCAAAGTGAT--AACT-AGCCAGT--CCATC---AGC 885 consensus_15562#2 ACCATTTGCATTGTTTTGGTGCCCTTGGGAGCTTTAGTTTTCTCAGGTTTCAATC--ATC 256 * * * * ** ** * * consensus_15562#3 ACCAA-CCAGACGTAT---T--GTCAACTTGCTCAGTGACGTCAGT--GT----GTCCTG 152 consensus_15562#4 ACCAA-CCAGACGTAT---T--GTCAACTTGCTCAGTGACGTCAGT--GT----GTCCTG 107 consensus_15562#1 ACCAAACCAGACGTTTGTGT--GCAAACTTGGCTGCCAGTGACAGT--GCAGTGGTGGTG 376 consensus_15562#0 ACCAA-CCAGACGTAT---T--GTCAACTTGCTCAGTGACGTCAGT--GT----GTCCTG 933 consensus_15562#2 TACGACACAGAGAACTTGATAAGCCCACACTTATGACGACTACATTTGGCCTCTGTTGAG 316 * * **** * * * ** ** * * ** * consensus_15562#3 CTCT-------------ATTAAGTACTAT-TTTGAACA-GCGATCTATAT----AACCGT 193 consensus_15562#4 CTCT-------------ATTAAGTACTAT-TTTGAACA-GCGATCTATAT----AACCGT 148 consensus_15562#1 CACTGGCTGCTGATTGAAGTGACTGATGT-TTGGAACAAGCAATGCTGATGATGAACCGT 435 consensus_15562#0 CTCT-------------ATTAAGTACTAT-TTTGAACA-GCGATCTATAT----AACCGT 974 consensus_15562#2 CTCTACCTGACATCCTCAACTGTTCTTAGATCCGAACATGAATTCAGGAC-ATCAATAAT 375 * ** * * * * ***** * * * ** * consensus_15562#3 GAAAACCTCGTG---ATGT-ATTTTGCTGTCGTCTGAC--TCAAAGGATGAGACCGAAGT 247 consensus_15562#4 GAAAACCTCGTG---ATGT-ATTTTGCTGTCGTCTGAC--TCAAAGGATGAGACCGAAGT 202 consensus_15562#1 GGAAAACCTGCGTGGATGTGATTTTCCTGTCGTCTGAC--TCAAAGGATGAGACCGAAGT 493 consensus_15562#0 GAAAACCTCGTG---ATGT-ATTTTGCTGTCGTCTGAC--TCAAAGGATGAGACCGAAGT 1028 consensus_15562#2 ACCATCATCACACA-ACAACTTTTCACT-TCAACTCACCCTCCCCTTATAATATTTGA-C 432 * * *** ** ** ** ** ** ** * * * consensus_15562#3 ACAATATATGTATAGTT-TTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 306 consensus_15562#4 ACAATATATGTATAGTT-TTGGTTGTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 261 consensus_15562#1 ACA-TATATGTATA-TT-TTGGTTGT-TTGAGTATGACTGTCGGAAATGTGATCCCATGA 549 consensus_15562#0 ACAATATATGTATAGTT-TTGGTTGTGTTGAGTATGACTGTCGGAAATGTGATCCCATGA 1087 consensus_15562#2 ACA-TAAACCTGAACCTATTATTTCTCTTACTCAAGATGAACAACAAAAAATTCCCCTGA 491 *** ** * * * * ** ** * ** * * ** * consensus_15562#3 AAAAA---------------------------------------------------- 311 consensus_15562#4 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 307 consensus_15562#1 TTGTGACGTGGTCCAAAAAAAA----------------------------------- 571 consensus_15562#0 TTGTGACGTGGTGCCAATAATTTTTACCCTGCGATGTTCGTGAAAAAAAGAAAAAAA 1144 consensus_15562#2 TACC----------------------------------------------------- 495 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||