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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1364 fasta sequence
[GAGCCGAGAGCGCAACAAAAGGAAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT-GTCCTGCACATATCCAATATGATAC-TTGCTATC-GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTG-TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT-CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAGATTGATCTTCTGATGGTTCAATTAAAAAAAAAAA]
[+] EMBL AK073303 [GAGCCGAGAGCGCAACAAAAGGAAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTG TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCT ]
[+] EMBL OSC103951 [ ccgGCGCAACAAAAGGAAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCG GCAG CTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGT ]
[+] EMBL CB658484 [ AACAAAAGGAAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTG TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCG ]
[+] EMBL AK103953 [ AAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTG TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCT ]
[+] EMBL AU065173 [ GGGAAACCTCGCCGTCCTCTCTCTCCATCCATGCCCTAGCACGCGCCGCGCA NCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGGTCCTGCACATATCCAATATGATACTTTGCTATCGGGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCCATGGn ]
[+] EMBL CF318835 [ ATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCCCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCT ]
[+] EMBL CF294434 [ ATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTGNTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCT ]
[+] EMBL OSC106441 [ CGCGCA NCTACGAGCGGGAG CACACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGNTAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGNATTCTACAATACTG ]
[+] EMBL C26469 [ CACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGT GTCCTGCACATATCCAATATGATAC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGA CGATGAGACTCCAATGGTG TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGGATTACCGGNGCACTA ]
[+] EMBL AU065749 [ AC TTGCTATC GGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTG TGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAA CGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTCCTGTAAGAAGC TTCACATTGG ACGTC ]
[-] EMBL CF318836 [ AGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCAaaaaaaa ]
[-] EMBL CB658485 [ ATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAGATTGATCTTCTGAT ]
[+] EMBL AU108581 [ GATNCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCT CATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAa ]
[+] EMBL AU091418 [ CTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCTACATGTGCTTAGACAAGAAGCAGAGGCA TTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAGATTGATCTTCTGATGGTTCAATTAAAAAAAAAAA]
consensusID : consensus_15571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1096 fasta sequence
[AAACGAATTCGCCTTGGACCTGACTGGACTGAAGAGTAAAGTTTCTAATGTTCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATCTGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCC-TCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTNCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCT-CAGAGATT-AGTTGGAGTGTTGT-CTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF328730 [AAACGAATTCGCCTTGGACCTGACTGGACTGAAGAGTAAAGTTTCTAATGTTCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATCTGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCC TCTGTCTCCTATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTC ]
[+] EMBL C96752 [ AGTGGTNTTCAAGTTGCATTACGTTGGCCTTCTGTCNCCTATGCACCCCACGGATGTACAAGTACTCCATACAAACTAAAGACATGGCTGCCAAGCGTCTAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAATGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATATTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTNCCGAGCTCAACAGCGTGGGTGGGAGCCCAAAATTACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCT CAGAGATT AGTTGGAGTGTTGT CTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAAAAAAAAAAAAA ]
[+] EMBL BI796981 [ TACCCACCTTTTCGGGTTCTTGCCTTATGTCAAGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTGCTGTTCTCCAGGACCTTAAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTGACGCCTGTTTTGTACCATACTTAATTGTTGCTCCAGAGATTAAGTTGGAGTGTTGTCCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAaaa ]
[+] EMBL AU030599 [ TCTCCAGGACCTTAAAGCCAACNCCCTCATGTGCTTAGACAAGAAGCAGNGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTNCGGACTACAGTGTTATGATGCCNCACTAGATTTTGTTAACTTTTAACTAACNCCTGTTTTGTNCCATACTTAATTGTTGCT CAGAGATT AGTTGGAGTGTTGT CTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATNTGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF294435 [ GACAAGAAGCAGAGGCATTTTTTTTGTATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCT CAGAGATT AGTTGGAGTGTTGT CTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAGAAAAAA ]
[+] EMBL AU092070 [ AAGCAGAGGNATTTTTTTTGTAAATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTAACGCCTGTTTTGTACCATACTTAATTGTTGCT CAGAGATT AGTTGGAGTGTTGT CTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTAATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCAAGTTACTGCTTCATATGGCCATAGATTGATCTAAAAAAAAAAAAAA ]
[+] EMBL BI795367 [ TATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACTAGATTTTGTTAACTTTTAACTGACGCCTGTTTTGTACCATACTTAATTGTTGCT CAGAGATT AGTTGGAGTGTTGT CTCATAGTTTTGGTCATTAaaaaaa ]
consensusID : consensus_15571#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[GGCCGCTAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCGCACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGATTTCAAGTTGCATTACGTTGGCCTCTGTC]
[+] EMBL CF312339 [GGCCGCTAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTCCATCCATGCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCGCACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGATACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCGATGAGACTCCAATGGTGTGGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGGTGCGATTCCAAGTGGATTTCAAGTTGCATTACGTTGGCCTCTGTC]
consensusID : consensus_15571#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence
[AGGTACCGTCCGGAATTCCCGGGTCAGACCCACGCGTCCGGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTCCTGTTCTCCAGGACCTTGAAAGCCAACGCCCTCATGTGCTTAGACAAGAACCAGAGGCATCTTTTTTGGNATATGGGCTTCCAAGTGATTCGGACTACAGTGTTATGATCCTCACTAGATTTTGTTAACTTTTAACTGACCCTGTTGTGTACCATACTTAATGGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATANT]
[-] EMBL BM422263 [AGGTACCGTCCGGAATTCCCGGGTCAGACCCACGCGTCCGGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCTATTTGTCAGTCCTGTTCTCCAGGACCTTGAAAGCCAACGCCCTCATGTGCTTAGACAAGAACCAGAGGCATCTTTTTTGGNATATGGGCTTCCAAGTGATTCGGACTACAGTGTTATGATCCTCACTAGATTTTGTTAACTTTTAACTGACCCTGTTGTGTACCATACTTAATGGTTGCTCAGAGATTAGTTGGAGTGTTGTCTCATANT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15571#1 ------------------------------------------------------------
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 GAGCCGAGAGCGCAACAAAAGGAAAGCAGGGAAACCTCGCCGTCCTCTCTCTCCATCCAT 60
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 ------------------------------------------------------------
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 GCCCTAGCACGCGCCGCGCAGCCTACGAGCGGGAGCCACACCTCGAGGTCTTCATCTGTT 120
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 ------------------------------------------------------------
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 GCACTCATGATTTAGCACCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGT 180
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 ------------------------------------------------------------
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TGCTAGGATAAAAATCTCAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGG 240
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 -------------------------------------AAACGAATTCGCCTTGGACCTGA 23
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 GGCCTGTTACTTCAACAACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTG 300
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 CTGGACTGAAGAGTAAAGTTTCTAATGTTC-ATGTGTTCTTCTGGCACTTGTTGGACTTG 82
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 CAGAATTCTACAATACTGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTG 360
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 TGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGA 142
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TGAATGCTCTTCGCCAAGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCCAATATGA 420
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 TACTTGCTATCTGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCG 202
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TACTTGCTATCGGCAGTATGATCTTCCATGCCACCTTACAGCACGTTTTACAGCAGAGCG 480
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 ATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACT 262
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 ATGAGACTCCAATGGTGTGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACT 540
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 GGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAG 322
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 GGCATTACCGGAGCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAG 600
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 TCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCC 382
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TCCATTTCCTGGTGCGATTCCAAGTGGTATTCAAGTTGCATTACGTTGGCCTCTGTCTCC 660
consensus_15571#2 -----------------------------------------------GGCCGCTAATTCC 13
consensus_15571#1 TATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTC 442
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TATGCATCCCACGGATGTACAAGTACTACATACAAACTAAAGACATGGCTGCCAAGCGTC 720
consensus_15571#2 CTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTCCATCCATGCCCTAGCACGCGCCGC 73
consensus_15571#1 TAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAA 502
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TAGCAAAGCTGTGGGTTCTTACGTTGAGCTTGGCGACTCTTTGCTGGCTATTTGATCGAA 780
consensus_15571#2 GCAGCCTACGAGCGGGAGCCGCACCTCGAGGTCTTCATCTGTTGCACTCATGATTTAGCA 133
consensus_15571#1 TGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATA 562
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TGTTCTGTAAGAAGCTTTCACATTGGTACGTCAACCCACAAGGGCACGCATGGTGGCATA 840
consensus_15571#2 CCAGCTGAAGTGACCTCTGAGACTGCGCGGTGACGTAGCCTGTTGCTAGGATAAAAATCT 193
consensus_15571#1 TTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTNCCGAGCTCAAC 622
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 TTCTCATGGGATTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGAGCTCAAC 900
consensus_15571#2 CAGTAGTTAAGCATGGCGGATTCTATGGTGTCAAGTTTCTGGGGGCCTGTT-ACTTCAAC 252
consensus_15571#1 AGCGTGGGTGGGAGCCCAAAATTACCCACC-TTTTCGGGT----TCTTGCCTTATG-TCA 676
consensus_15571#3 ----------------AGGTACCGTCCGGAATTCCCGGGT----CAGACCCACGCG-TCC 39
consensus_15571#0 AGCGTGGGTGGGAGCCCAAAATTACCCACC-TTTTCGGGT----TCTTGCCTTATG-TCA 954
consensus_15571#2 AACTGAGCTCTGCGAGGAAAATTATGCACACTCGTCATATATTGCAGAATTCTACAATAC 312
* * * * * *
consensus_15571#1 AGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCT---ATTTGTCAGTGCTGTTCTCCA 733
consensus_15571#3 GGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCT---ATTTGTCAGTCCTGTTCTCCA 96
consensus_15571#0 AGATTCAGAAACCCCAAAAGAGGGAATGAGTTCTCT---ATTTGTCAGTGCTGTTCTCCA 1011
consensus_15571#2 TGTTTCTAATGTTCCATGTGTTCTTCTGGCACTTGTTGGACTTGTGAATGCTCTTCGCCA 372
* *** * *** * ** * * * **** * * ** *** ***
consensus_15571#1 GGACCTT-AAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTG-T 791
consensus_15571#3 GGACCTTGAAAGCCAACGCCCTCATGTGCTTAGACAAGAACCAGAGGCATCTTTTTTGGN 156
consensus_15571#0 GGACCTT-AAAGCCAACGCCCTCATGTGCTTAGACAAGAAGCAGAGGCATTTTTTTTG-T 1069
consensus_15571#2 AGGTTTTGAGAAACGATTCAGTGTCCTGCACATATCC-AATATGATACTTGCTATCGGCA 431
* ** * * * * * * *** * * ** ** * * * * *
consensus_15571#1 ATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACT-AGATTTTGTTA 850
consensus_15571#3 ATATGGGCTTCCAAGTGATT-CGGACTACAGTGTTATGAT-CCTCACT-AGATTTTGTTA 213
consensus_15571#0 ATATGGGCTTCCAAGTGATTACGGACTACAGTGTTATGATGCCTCACT-AGATTTTGTTA 1128
consensus_15571#2 GTATGATCTTCCATGCCACCTTACAGCAC-GTTTTACAGCAGAGCGATGAGACTCCAATG 490
**** ****** * * * ** ** *** * * *** * *
consensus_15571#1 ACTTTTAACTAA-CGCCTGTTTTGTACCATACTTAATT-GTTGCTCAGAGATTAGTTGGA 908
consensus_15571#3 ACTTTTAACTGA-C-CCTGTTGTGTACCATACTTAATG-GTTGCTCAGAGATTAGTTGGA 270
consensus_15571#0 ACTTTTAACTAA-CGCCTGTTTTGTACCATACTTAATT-GTTGCTCAGAGATTAGTTGGA 1186
consensus_15571#2 GTGTGGGGAGATTCTCCTATATCTTTATGTACTTTATTCACCAGACTGGCATTA-CCGGA 549
* * *** * * ***** ** * * **** ***
consensus_15571#1 GTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTA 968
consensus_15571#3 GTGTTGTCTCATANT--------------------------------------------- 285
consensus_15571#0 GTGTTGTCTCATAGTTTTGGTCATTATTTTTTGTTTCTCTACATTTGATTTTCCGTTCTA 1246
consensus_15571#2 GCACTATGCCTACTTTCCTTTTCCTATACGGTGCTGCTTTTGCAGTAGTCCATTTCCTGG 609
* * * * *
consensus_15571#1 ATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCA 1028
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 ATAGGACTGAATTTTATTTGTTTTTTGTTTGTCTTGAATGTTGTCGAACAGTTTTAGTCA 1306
consensus_15571#2 TGCGATTCCAAGTGGATTTCAAGTTGCATTACGTTGGCCTCTGTC--------------- 654
consensus_15571#1 AGTTACTGCTTCATATGGCCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1088
consensus_15571#3 ------------------------------------------------------------
consensus_15571#0 AGTTACTGCTTCATATGGCCATAGATTGATCTTCTGATGGTTCAATTAAAAAAAAAAA-- 1364
consensus_15571#2 ------------------------------------------------------------
consensus_15571#1 AAAAAAAA 1096
consensus_15571#3 --------
consensus_15571#0 --------
consensus_15571#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||