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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1707 fasta sequence
[TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA-T-GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC-TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG-TTGGAACGGC-TGAAGCGG-CGCAA-GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT-GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG-TGGCATCAGTAGAG-TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG-TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG-AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA-CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC]
[+] EMBL AU067953 [TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGG GNGANT GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTT ]
[+] EMBL AK061575 [ AAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAA ]
[+] EMBL AK066499 [ CCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ]
[+] EMBL CB635730 [ GCATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAA GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGC ]
[+] EMBL CB633880 [ ATCGCCGCGCGGAGCAAAGCAGAGAGGGGGAGGAA GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATNCATCTATCAAATGCCTGGACTCGCC ]
[+] EMBL AU068168 [ CCGCGCGGA NAAAGCAGAGANGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGG GGTATT GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAAC ]
[+] EMBL CB640338 [ AGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCACATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTG ]
[+] EMBL CB656342 [ GCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGACCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATTGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTACATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAGTTTTATGGCTACAGCT ]
[+] EMBL AU068172 [ CGCCGCCGCCGCCGCCGCCGCCGCACGGNGTAN TNGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGNACAGTTTGGGACGGCTTGAAGCGGNCGAAAGGGAAGGAGAGAATTTTTTAGNCCATGgtttgna ]
[+] EMBL AF074763 [ GCCGCCGCCGCCGCCGCCGCACGGCGGGA T GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAA TTGGAACGGC TGAAGCGG CGCAAGGGAANAANAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCANTTGTCTTCTGTTGGCATCAGTAAAN TTTATGGCTACAGCTGGACTAC TT CCTTATTAACGTTACAAACATTTCGTCAAATTTCACCACATTCNAAAGCAACATCTGGAATTGCTCTTTCTTTGAAAANATGGNTCTATCAATCTATCCAATGCCTGGACTCNCC ACTATCTGANAATATTGTTGGGAATNTACA CTTG CCTTNGTTCA AATCAA TTTTTCTGTTGGATGGCAAAAAAAGGATNAAAAAAA TCT CNCCNGGGGATGT AAACCTGGTTCTAATT ]
[+] EMBL CF322540 [ CCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAG TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGC ]
[+] EMBL CA766296 [ GAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAAC TTGGCCCCAAGCTAAACAAACCAGAGGAAAT AAAGAACAA TTGGAACGGC TGAAGCGG CGCAA GGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCTGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGA ]
[+] EMBL CB683497 [ AGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTT GGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTG TGGCATCAGTAGAG TTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCG TACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTG AGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACTATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGTTGGATGGCAAAAGAAGGATG AAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAATTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGTTGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATCTGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAATAAATGG ]
[-] EMBL CB633881 [ TCCAGGGGGTCTCTTGGAGATTCGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC]
[-] EMBL CB629936 [ GCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAATGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC]
[-] EMBL CB635258 [ TTCAACTGATTTCAATGCATTACTTGTTACCAGCG TTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGACGTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC]
[-] EMBL CB635731 [ AAGCAGAAGGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTATTAGAACCTGTCTCAAATCGTAAGAAGAATAGCCAGCTGGAGGATGATGGTTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCACAAGTATTAGAAGTGACCATCCCGATGAACTTCTTAGTATCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGTTGC]
[-] EMBL CB683889 [ GGAACTTGAAAAAATGGAAAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCA CAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTGC]
[+] EMBL AU068169 [ GACGCGCAGCGAAAAAAGCACCAAAAGTTACTAGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGT GNTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ]
[+] EMBL AU067954 [ GGAGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGT GNTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ]
[+] EMBL OSC0051 [ AGGATGATGGCTTGGTGATTACAAAAGCTCTGTATGGGAATCGCAAAAANGTTAAAGAGAGCAGCGAATCAAATGAGTTGAATGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGAGGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGATCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATACAAGGTCATGGTAGATGATTACGCTG ]
consensusID : consensus_15608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 738 fasta sequence
[AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTGAGAGATGGATCTATCAA]
[+] EMBL CB629935 [AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGGACTTGCTCTTTCTTTGAGAGATGGATCTATCAA]
[+] EMBL CB635257 [ AGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCACGGCGGGATGGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCCGGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCCCGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACGTGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTATGGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAAAGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCGACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAATCATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGTTGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGTGCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACGTTCCCTTATTAGCGTAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15608#0 TATTAAAAAAAAATCCACATAAACCCTCGCTTCCGAAAAAACCCGCATCGCCGCGCGGAG 60
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 CAAAGCAGAGAGGGGGAGGAAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCACGGCGGGAT 120
consensus_15608#1 ------AGAGCGCGGTAGGAAGCCGCCGCCGCCGCCG---------CCGCACGGCGGGAT 45
**** * ** ********************* **************
consensus_15608#0 GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCC 180
consensus_15608#1 GGAGTCGACGCCGGAGCCGGAGGACGGGAGGGAGCTCTACGCGCTGCTCCACCTCTCGCC 105
************************************************************
consensus_15608#0 GGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCC 240
consensus_15608#1 GGACGCCTCCGGGGAGGAAATCCGCCGGGCTTACCGCCAGTACGCGCAAATCTACCACCC 165
************************************************************
consensus_15608#0 CGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACG 300
consensus_15608#1 CGACAAGTACCAGGACCCCCAGATGAAGGATGTGGCAACTGAAAACTTCCAACGAATACG 225
************************************************************
consensus_15608#0 TGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTAT 360
consensus_15608#1 TGATGCATATGAGATACTATCAGATGAGAACAAGAGGCAGATATATGACATCTATGGTAT 285
************************************************************
consensus_15608#0 GGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAA 420
consensus_15608#1 GGAAGGTTTAAATTCTGGCCTGGAACTTGGCCCCAAGCTAAACAAACCAGAGGAAATCAA 345
************************************************************
consensus_15608#0 AGAACAGTTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCG 480
consensus_15608#1 AGAACAATTGGAACGGCTGAAGCGGCGCAAGGAAGAAGAGAAATTTTTAGCCCATGCTCG 405
****** *****************************************************
consensus_15608#0 ACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAAT 540
consensus_15608#1 ACCCACTGGCTCAATAATTGCTAATTTTTCCGTGCCACAGTATTTAGATGGCTATGGAAT 465
************************************************************
consensus_15608#0 CATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGT 600
consensus_15608#1 CATGAGAGGCATGGGAATGTCCAGTGAAGTTCAGTTGCCAGTGTCCAAGAAAAATACTGT 525
************************************************************
consensus_15608#0 TGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGT 660
consensus_15608#1 TGTTGTTGGTGGAAATTTGGTTGTCAATGGCACAGATGGAACTGGTGCAGCAAGCGCTGT 585
************************************************************
consensus_15608#0 GCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACG 720
consensus_15608#1 GCTGCGTCACCAGTTGTCTTCTGTGGCATCAGTAGAGTTTATGGCTACAGCTGGACTACG 645
************************************************************
consensus_15608#0 TTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGG 780
consensus_15608#1 TTCCCTTATTAGCGTACAAACATTTCGTCAAATTTCACCACATTCGACAGCAACATCTGG 705
************************************************************
consensus_15608#0 ACTTGCTCTTTCTTTGAGAGATGGATCTATCAATCTATCAAATGCCTGGACTCGCCAACT 840
consensus_15608#1 ACTTGCTCTTTCTTTGAGAGATGGATCTATCAA--------------------------- 738
*********************************
consensus_15608#0 ATCTGACAATATTGTTGGGAATATACAGCTTGCCCTTGGTACAGACTCAAGTATTTCTGT 900
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TGGATGGCAAAAGAAGGATGAAAAAAATTCTGCAGCAGGGGATGTGAAGCTTGGTACTAA 960
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TTATTTTGGTGCATCTGCTCATTACACCCGTTATTTCTCCACCAAGTCTCATGGTCGCGT 1020
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TGCTGGTCGAGTTGGAAGCACGGCCCTTGATTTTGAAATTGGAGGAGGAAGGCGGATATC 1080
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TGAGTTCAGTACTGTAAGGATGATCTATAATATAGGAATCCAGGGGGTCTCTTGGAGATT 1140
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 CGAGTTGCATCGTGCTGGTCAAAAATTAGTTATCCCAGTTTTGCTTTCAACTGATTTCAA 1200
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TGCATTACTTGCTACCAGCGTTTTTGCTATTCCTTCAACACTATATTTTCTACTTCAGAC 1260
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 GTATTTTGTAAAGCCATACTGTCTTAAGCGGGAAAAGCAGAAGGAACTTGAAAAAATGGA 1320
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 AAGTTTGTCTTCACAGCTAACTGAAGCCAGACGCGCAGCGAAAAAAGCACAAAAGTTACT 1380
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 AGAACCTGTCTCAAATCGTAAGAAGAATAGACAGCTGGAGGATGATGGCTTGGTGATTAC 1440
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 AAAAGCTCTGTATGGGAATCGCAAAAAAGTTAAAGAGAGCAGCGAATCAAATGAGTTGAA 1500
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TGATGATGTGGCTTCGCAAGTATTAGACGTGACCATCCCACTGAACTTCCTCGTCTCTGA 1560
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 GGCAGGCCAGCTAAAGCTTCATGAGGGGATCAAGAAGTCTGGAATAATGGGCTTCTACGA 1620
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 TCCTTGCCCTGGTGATCCAAAGCTGTTACTTGTAGAATACACATTTCATGGTCAGAAATA 1680
consensus_15608#1 ------------------------------------------------------------
consensus_15608#0 CAAGGTCATGGTAGATGATTACGCTGC 1707
consensus_15608#1 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||