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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1256 fasta sequence
[TATTTCACCGCTTCGCTCCATCCATCCGTTCCGTTTAGTTTGCTCCAAGCGCAAGCGCAAGCGG--CGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGCCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC-TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA-GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT-GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT-GTTGATAGCACTGGTAAATTG-GTTGGGATGATCACA-AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA-CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA-CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA-TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA-CTTCTGATATGAAAAAA-----AAAAAAAAAAAAGGGTTGAAGTGAAAATATTNNCTCCCATGTTTAAAAAAAAAA]
[+] EMBL AK061717 [TATTTCACCGCTTCGCTCCATCCATCCGTTCCGTTTAGTTTGCTTCAAGCGCAAGCGCAAGCGG CGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACG CCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAA ]
[+] EMBL AU055912 [ CTTCGCTCCATCCATCCGTTCCGTTTAGTTTGCTCCAAGCGCAA C CNAGAGGANCGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGCCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCC ]
[+] EMBL CB645557 [ CATCCATCCGTTCCGTTTAGTTTGCTCCAAGCGCAAGCGCAAGCGG CGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGCCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTT ]
[+] EMBL CB682081 [ ATCCCTCCGTTCCGTTTAGTTTGCTCCAAGCGCAAGCGCAAGCGG CGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGCCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGG ]
[+] EMBL AK065986 [ GCTCCAAGCGCAAGCGCAAGCGG CGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGCCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTCTGATATGAtga ]
[+] EMBL C98809 [ AGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCANCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACCTTGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACANCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTANGCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGANGTGGATAGTACTTGGAng ]
[+] EMBL AU056436 [ AGCCATGGACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGCCTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCTGCGGGCCCCTCCGCGCCTACNNCGCTCCCGNTGCCCCCGCGCNCNCCGCGCACAACAACGGAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACC TGNAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGC ]
[-] EMBL CB680143 [ GCCTAATCTCCATGTCGTTACACC TGCAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTGTTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAAAGGATCAGTGTATTGAAATGTAACA CTTCTGATAAGAAAAAA Agga ]
[-] EMBL CA763591 [ ATGATCTGTTA GCACTTGACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGGGGTGGATAGTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCATCGCTGATGT GATGACTTATTCGCCTCTTGCGGTTCGTGAAAGTACCAACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTTTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACC CTTTTGATAAAAAAAAA AAAAAAAAAAAA ]
[+] EMBL BI811996 [ TCGCTGATGTGGATGACTTATTCCCCTCTTGCGGTTCGTGAAAGTACC ACCTTGATGCTGCTACAAGGTTGCTACTTGAAACCCAATATCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTGCGTTGGGATGATCACACAGGGGGACTGTTGTCAGAGCTGCCCTCCAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CCGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACACTGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACCTTCTGATATGATGATACCTTCAAAAAAAAAA ]
[+] EMBL BI811966 [ aacACCAAATATCGCAGATTCCCTGTTGGTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGACCAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACT CAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCA CCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTT CAGATATTTGGAATATA CC CAATCTGTTT GGGCCACCCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACCTTCTGATA AAAAAA AAA ]
[+] EMBL AU055913 [ TCGCAGATTGCCTGTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTCTGATATGAAAAAA A ]
[+] EMBL AU181277 [ GTT GTTGATAGCACTGGTAAATTG GTTGGGATGATCACA AGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAANCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAAaaaaa ]
[+] EMBL CF312200 [ CTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAGCATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTCTGATATGAAAAAA AAAAAAAA ]
[-] EMBL CF312199 [ TGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAGCATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTTTTTTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATTTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTTTGATATGAAAAAA AAAAAAAAA ]
[+] EMBL BM419257 [ CCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGA CAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTC ATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGC ATCTGTTTGGGGCCA CCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA TGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTCTGATATGATGATA CCTTCCGCATCTGGGTTGAAGTGAAAATATTNNCTCCCATGTTTAAAAAAAAAA]
[+] EMBL CA754428 [ TTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACA CTTCTGAAAAAAAAAAA AAAAAAAAAAAAaa ]
consensusID : consensus_15661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence
[CGTGTGAACACCGAAGTGTGTTTTCCAATAGATCGTAGCACTGACTCATATCGGAAGTGACTGACTGCACAACACAGCATGTTTCCGAGGGGATAGACCNTGGAAACNCTTCGCGANAATCCAGAGTTCTGGCCCAAACCCAAGGCCAAAGTCTTCCCTGATGGGATGACTTATTCCCCTCTTCCGGTTTCGTGAAAAGTACCCAACCTTGATGCCTGCTACAAGGTTGCCTACTTGAAACCAATATCGCAGATTGCCTGTTTGTTGATAGCACCTGGTAAATTGGTTGGGATGATCACAAGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGACAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATA-CC-CAATCTGTTTGGGCCCACCAGATTT-GTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACTTCTGATATGATGATACCTTCCGCATCTGGGTTGNCAGTGAAATATTTTCCAAGGTTTAGATAAAAAAAAAA]
[+] EMBL BQ907967 [CGTGTGAACACCGAAGTGTGTTTTCCAATAGATCGTAGCACTGACTCATATCGGAAGTGACTGACTGCACAACACAGCATGTTTCCGAGGGGATAGACCNTGGAAACNCTTCGCGANAATCCAGAGTTCTGGCCCAAACCCAAGGCCAAAGTCTTCCCTGATGGGATGACTTATTCCCCTCTTCCGGTTTCGTGAAAAGTACCCAACCTTGATGCCTGCTACAAGGTTGCCTACTTGAAACCAATATCGCAGATTGCCTGTTTGTTGATAGCACCTGGTAAATTGGTTGGGATGATCACAAGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAAAGAAGACAGCTGAAGAAACTGCTTAAATTAGACAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATA CC CAATCTGTTTGGGCCCACCAGATTT GTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACTTCTGATATGATGATACCTTCCGCATCTGGGTTGNCAGTGAAATATTTTCCAAGGTTTAGATAAAAAAAAAA]
[+] EMBL BQ908125 [ TTAGACAGTGTAGATGATTCTTTATAAGGCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACTTCTGATATGATGATACCTTCCGCATCTGGGTTG AAGTGAAAaaaaa ]
consensusID : consensus_15661#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence
[CNGNGACGCTTGGGGCCCTCAAAATAAAGAAGACAGCTGAAGAAACNACTTAANTTAGACAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACTTCTGATATGATGATACCTTCAAAAAAANAAA]
[+] EMBL OSR3382A [CNGNGACGCTTGGGGCCCTCAAAATAAAGAAGACAGCTGAAGAAACNACTTAANTTAGACAGTGTAGATGATTCTTTATAAGTCATTTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAACTACATCAGCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATAGATGGATATAGGTATTGTATTGTTGCAGATATTTGGAATATAGCCGCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAACACTTCTGATATGATGATACCTTCAAAAAAANAAA]
consensusID : consensus_15661#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[GTCGTTNNGNNNGGANGATCACCTGGGGGANTGNTNTNACAGCTGCCCTCAATANANNAANTANANCTGAANANCCTGCTNATATGGCACNGATGTCGATGATTCTTTATAAGGNATTTCTGGGANTGCAGTCACTTGGAAATTTAGTCCNCTGAAACATTATTTGGTGAAATGAACTACATCNNCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATANATGGATATAGGTATTGTATTGTTGCANATATTTGGAATATAGCCGCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTN]
[+] EMBL BE228302 [GTCGTTNNGNNNGGANGATCACCTGGGGGANTGNTNTNACAGCTGCCCTCAATANANNAANTANANCTGAANANCCTGCTNATATGGCACNGATGTCGATGATTCTTTATAAGGNATTTCTGGGANTGCAGTCACTTGGAAATTTAGTCCNCTGAAACATTATTTGGTGAAATGAACTACATCNNCCTTACAGATACTGCGAATTCGACAGTCAATTCTTCTTGGAACATANATGGATATAGGTATTGTATTGTTGCANATATTTGGAATATAGCCGCAATCTGTTTGGGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACATGGAGAATGTTATTATTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTN]
consensusID : consensus_15661#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GGTCGGAGAGNAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGTCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCATAGCCCATGGNGGCACGCNGCTCCGTTCCGCCGATGCNGCCGTCGCGTCNGTTCACCACCACTNAGCTCGNTCGCCTCGNTCACCGCCATACNTCCCTCGTCTCTGGCTGGGGCCTCGGCTCGGGTCGGTGGGTGGCGGGGACACACGATTCAATTGTATTATACAAAGCTATTCATTGTAACTNACTCGTATAGTTAANGTGTAAA]
[+] EMBL C25932 [GGTCGGAGAGNAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGTCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCATAGCCCATGGNGGCACGCNGCTCCGTTCCGCCGATGCNGCCGTCGCGTCNGTTCACCACCACTNAGCTCGNTCGCCTCGNTCACCGCCATACNTCCCTCGTCTCTGGCTGGGGCCTCGGCTCGGGTCGGTGGGTGGCGGGGACACACGATTCAATTGTATTATACAAAGCTATTCATTGTAACTNACTCGTATAGTTAANGTGTAAA]
consensusID : consensus_15661#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence
[TCGAACACTGGAACCTACCACTCCACGCCCTGTACAGAGTACTGCGAAGTTCGACAGTCAAGTTCTTCTGTGGAACATAGATGGATATAGGTATTGTATTGTTCCCAGATATTCTGGAATATAGCCGCAATCTGTTTGGGCCCTCCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACACTGGAGAATGTTATTATT]
[+] EMBL BI809375 [TCGAACACTGGAACCTACCACTCCACGCCCTGTACAGAGTACTGCGAAGTTCGACAGTCAAGTTCTTCTGTGGAACATAGATGGATATAGGTATTGTATTGTTCCCAGATATTCTGGAATATAGCCGCAATCTGTTTGGGCCCTCCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACACTGGAGAATGTTATTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 TATTTCACCGCTTCGCTCCATCCATCCGTTCCGTTTAGTTTGCTCCAAGCGCAAGCGCAA 60
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 GCGGCGGAGAGGAAGCCATAGCCACCTCCCACCACGCCTTGGCCTTTCCATTACCTACGC 120
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 CTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCCATAGCCATGG 180
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 ACGCCACGCTGCTCCGCTCCGCCGATGCCGCCGTCGCCGTCCGCTCCACCACCACTGCGC 240
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 CTCCGCCTCGCCCTCGCCTCCACCGCCCCAGTACCCTCCCCCTCCCGTCCTCCTGCGCCT 300
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 GCGGGCCCCTCCGCGCCTACGCCGCTCCCGCTGCCCCCGCGCCCGCCGCGCACAACAACG 360
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 GAGTCTACACAGTTGGTGACTTCATGACCAAAAGGCCTAATCTCCATGTCGTTACACCTG 420
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 ------------------------------------------------------------
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 CAACCTCGGTTGATGAAGCTCTCGAGACGCTGGTGCAACACAAGATCTCTGGTTTCCCTG 480
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 --------------------------CGTGTGAACACCGAAGTGTGTTTTCCAATAGATC 34
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 TTGTTGATGACACCGGAAAGTTGGTGGGTGTTGTCTCAGATTATGATCTGTTAGCACTTG 540
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 GTAGCACTGACTCATATCGGAAGTGACTGACTGCACAACACAGCATGTTTCCGAGGGGAT 94
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 ACTCAATATCAGGAAGTGGACTGACTGGCACAAACACAAGCATGTTTCCTGAGGTGGATA 600
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 AGACCNTGGAAACNCTTCGCGANAATCCAGAGTTCTGGCCCAAACCCAAGGCCAAAGTCT 154
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 GTACTTGGAAGACATTTCGCGAGATACAGAGACTCTTGAGCAAAACCAATGGCAAAGTCA 660
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 TCCCTGATGGGATGACTTATTCCCCTCTTCCGGTTTCGTGAAAAGTACCCAACCTTGATG 214
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 TCGCTGATGTGATGACTTATTCGCCTCTTGCGGTTC---GTGAAAGTACCAACCTTGATG 717
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 CCTGCTACAAGGTTGCCTACTTGAAACCAATATCGCAGATTGCCTGTTTGTTGATAGCAC 274
consensus_15661#2 ------------------------------------------------------------
consensus_15661#0 C-TGCTACAAGGTTGCTACTTGAAACCAAATATCGCAGATTGCCTGTT-GTTGATAGCAC 775
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ---GTCGTTNNGNNNGGANGATCACCTGGGGGANTGNTNTNACAGCTGCCCTCAATANAN 57
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 CTGGTAAATTGGTTGGGATGATCACAAGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAA 334
consensus_15661#2 ---------------------------------CNGNGACGCTTGGGGCCCTCAAAATAA 27
consensus_15661#0 -TGGTAAATTGGTTGGGATGATCACAAGGGGGACTGTTGTCAGAGCTGCCCTCAAAATAA 834
consensus_15661#4 -------------------------------------------------------GGTCG 5
consensus_15661#3 NAANTANANCTGAANANCCTGCTNATATGGCACNGATGTCGATGATTCTTTATAAGGNAT 117
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 AGAAGACAGCTGAAGAAACTGCTTAAATTAGACAG-TGTAGATGATTCTTTATAAGGCAT 393
consensus_15661#2 AGAAGACAGCTGAAGAAACNACTTAANTTAGACAG-TGTAGATGATTCTTTATAAGTCAT 86
consensus_15661#0 AGAAGACAGCTGAAGAAACTGCTTAAATTAGACAG-TGTAGATGATTCTTTATAAGTCAT 893
consensus_15661#4 GAGAGNAAGCCATAGCCACCTCCCACCACGCCTTG--------GCCTTTCCATTACCTAC 57
consensus_15661#3 TTCTGGGANTGCAGTCACTTGGAAATTTAGTCCNCTGAAACATTATTTGGTGAAATGAAC 177
consensus_15661#5 ---------------------------TCGAACACTGGAAC-CTACC-----------AC 21
consensus_15661#1 TTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAAC 453
consensus_15661#2 TTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAAC 146
consensus_15661#0 TTCTGGGACTGCAGTCACTTGGAAATTTAGTCCACTGAAACATTATTTGGTGAAATGAAC 953
consensus_15661#4 GTCTTCCCTTCCCTTCCCTTCCCTTCGCGCGCTACTTGGAATTGGATTAGCATAGCCCAT 117
** * *
consensus_15661#3 TACATCNNCCTTACAGA-TACTGCGAA-TTCGACAGTCAA-TTC-TTCT-TGGAACATAN 232
consensus_15661#5 TCCACGCCCTGTACAGAGTACTGCGAAGTTCGACAGTCAAGTTC-TTCTGTGGAACATAG 80
consensus_15661#1 TACATCAGCCTTACAGA-TACTGCGAA-TTCGACAGTCAA-TTC-TTCT-TGGAACATAG 508
consensus_15661#2 TACATCAGCCTTACAGA-TACTGCGAA-TTCGACAGTCAA-TTC-TTCT-TGGAACATAG 201
consensus_15661#0 TACATCAGCCTTACAGA-TACTGCGAA-TTCGACAGTCAA-TTC-TTCT-TGGAACATAG 1008
consensus_15661#4 GGNGGCACGCNGCTCCG-TTCCGCCGA-TGCNGCCGTCGCGTCNGTTCACCACCACTNAG 175
* * ** * * * * *** * *** ** *
consensus_15661#3 ATGGATATAGGTATTGTATTGTTGC-ANATATT--TGGAATATAGCCGCAATCT-GTTTG 288
consensus_15661#5 ATGGATATAGGTATTGTATTGTTCCCAGATATTC-TGGAATATAGCCGCAATCT-GTTTG 138
consensus_15661#1 ATGGATATAGGTATTGTATTGTTGC-AGATATT--TGGAATATACCC--AATCT-GTTTG 562
consensus_15661#2 ATGGATATAGGTATTGTATTGTTGC-AGATATT--TGGAATATAGCCGCAATCT-GTTTG 257
consensus_15661#0 ATGGATATAGGTATTGTATTGTTGC-AGATATT--TGGAATATAGCCGCAATCT-GTTTG 1064
consensus_15661#4 CTCGNT---CGCCTCGN-TCACCGCCATACNTCCCTCGTCTCTGGCTGGGGCCTCGGCTC 231
* * * * * * * * * * * * * * * * ** * *
consensus_15661#3 GGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA-TGGAGAATGTTATTA 347
consensus_15661#5 GGCCCTCCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACACTGGAGAATGTTATTA 198
consensus_15661#1 GGCCCACCAGATTTG-TCGCCTCTCCTTATTAGGTAGCATAACA-TGGAGAATGTTATTA 620
consensus_15661#2 GGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA-TGGAGAATGTTATTA 316
consensus_15661#0 GGGCCACCAGATTTGGTCGCCTCTCCTTATTAGGTAGCATAACA-TGGAGAATGTTATTA 1123
consensus_15661#4 GGGTCGGTGGG--TGGCGGGGACACACGATTCAATTGTATTATA-----CAAAGCTATTC 284
** * * ** * * * *** * * ** * * ** * ****
consensus_15661#3 TTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTN- 406
consensus_15661#5 TT---------------------------------------------------------- 200
consensus_15661#1 TTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAA 680
consensus_15661#2 TTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAA 376
consensus_15661#0 TTTTTATTTTTACTTTTATCATTGACTTGTATTCAAGAACATCAGTGTATTGAAATGTAA 1183
consensus_15661#4 ATTGTAACTN-ACTCGTATAGTTAANGTGTAAA--------------------------- 316
*
consensus_15661#3 ------------------------------------------------------------
consensus_15661#5 ------------------------------------------------------------
consensus_15661#1 CACTTCTGATATGATGATACCTTCCGCATCTGGGTTGNCAGTGAAATATTTTCCAAGGTT 740
consensus_15661#2 CACTTCTGATATGATGATACCTTCAAAAAAANAAA------------------------- 411
consensus_15661#0 CACTTCTGATATGAAAAAAAAAAAAAAAAAAGGGTTGAAGTGAAAATATTNNCTCCCATG 1243
consensus_15661#4 ------------------------------------------------------------
consensus_15661#3 ---------------
consensus_15661#5 ---------------
consensus_15661#1 TAGATAAAAAAAAAA 755
consensus_15661#2 ---------------
consensus_15661#0 TTTAAAAAAAAAA-- 1256
consensus_15661#4 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||