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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 766 fasta sequence
[CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC-ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG-AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA-CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT--GGTCGGGGAA-CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC-AGCCAGA-TCGAG-AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA-GTGGAGGGAGATGCACCCCGA-CGGCGA-CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC-CCCCGCTTCGCCTCTCGCC-TCC-GCCGCCGGCC-TCGCC-GGTGCGGTTTCTCTTGGTTGATT-T-TGGGAATTG-CGTAAAATGGATTAGCTCCTCT-TGCTTGCGCCTC-TCGTTACACGTGCATTCGC-ATTGCTCTCTAGGTGTTCGATCGGTGTTCT-CAGTGGAT-ACGT-GTGA-TCATATT-TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAAAAAAAAACACT]
[+] EMBL AK062051 [CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAT ]
[+] EMBL OSS10811A [ GAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGNNC ACGAGGACCANCCTCCGNTCCCTCGTCCCCTCCCAGAGGATNCGGTGCTCGATGCGGAAGAAGGGGCTGCANCCGGAGATNTACGAGGACGCG AAGGTTTACTNCAACGGGGAGCTNGTNCTNGTGA CGGGGGGAACCAAGCCGGAGTACACGGTNGACGTTTTNGTTGGGGGAA CCAa ]
[+] EMBL OSS15667A [ GGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTNT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGACAAGCCAGA TCGAGAAAGTTCCGCAAGAAGTTGGGCCACATC ]
[+] EMBL CF335464 [ GAATCCGGAGCAAAGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGATCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCCGGGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATT ]
[+] EMBL AU096888 [ AGTGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCG ]
[+] EMBL AU095757 [ gCGCCGCGGCGGCCAACGAGGACCACCCTCCG TCCCTCGTCCCATCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCG TTCGCNTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TG TTGCGCCTC TC TTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAA AAA AAAAAAAAAAAAA ]
[+] EMBL BE230626 [ GCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC G CGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAG ]
[+] EMBL BE230624 [ GCCGCGGCGGCC ACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCAGAGGATGCGGTGCTCGATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCG CGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC T C GCCGCCGGCC TCGCC GGTGCGGGTTCTCTTGGTTGATT T TGGGAATTGCCGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGCAATTGg ]
[+] EMBL AU096889 [ ATGCGGAAGAAGGGGCTGCACCCGGAGATCTACGAGGACGCG AAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGNAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGNAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTNTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACA AAAAAAAAAAAAAAAAAAA ]
[+] EMBL BI799537 [ ATCTACGA GACGCGAAAGTTGTACTGCAACGGGGAGCTGTTGCTGTTGACCGGGGGGAACCAAGCCGGAGTACACGGTGAACGTGT GTTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGCTCGTCATGGAC A CCAGA TCGAG AAGTTCC CAAGAAGT GGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGACCCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTC C ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATT CCATTTGCACA AAAAAAAAA ]
[+] EMBL AU070391 [ CTGCAACGGGAAGCTGGTGCTGGTGA CGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAA ]
[+] EMBL AT003454 [ CAAGCCGGAGTACACGGTGGACGTGT GGTCGGGGAA CCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAAAAGTGGGGCCACATCAAGGAGTACTGGCCCCAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAA ]
[+] EMBL AU174086 [ GGAACCCCCCCCTANTACGTCGGCGACACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAaaaa ]
[-] EMBL CF335465 [ CACGTCGGCGATGATCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGTTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GCGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAAaaaa ]
[-] EMBL CF293989 [ CACGTCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGTTGAGC CCCCGCTTCGCCTTTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTTTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACCGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTCCCATTTGCACACTCTGTAAAAAAAAAAAAAAAAAAAACACT]
[+] EMBL BI810079 [ TCGGCGATGGTCGTCATGGAC AGCCAGAGTCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCATGTGGAGGGAGATGCACCCCGATCGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGCACCCCGCTTCGCCTCTCGCC TCCAGCCGCCGGCCTTCGCC GGT CGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCTCCAGTGGATAACGTGGTGA TCATATTGTGTGGTATCGAACT ]
[+] EMBL AT003523 [ cgCGGCGATGGTCGTCATGGAC AGCCAGA TCGAG AAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACCCTCTGTAAAAAAAAAAAA ]
[+] EMBL BM421437 [ CCAGA TCGAG AAGTTCCGCAAGAAGT GGGCCACATCAAGGAGTACTGGCCCGAGGACCA GTGGAGGGAGATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCGCCGGCGCCAGCTGAGC CCCCGCTTCGCCTCTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC TTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATT CCATTTGCNCACTCTGTAAAAAAAAAA ]
[+] EMBL AT003760 [ TGGCCCGAGGACCA GT GAAGGANATGCACCCCGA CGGCGA CCCGGAGTTCGACCCGGAGGAGGAGGGATCCNCCGGCGCCAGCTGAGC CCCCGCTTCGCCTNTCGCC TCC GCCGCCGGCC TCGCC GGTGCGGTTTNTCTTGGTTGATT T TGGGAATTG CGTAAAATGGATTAGCTCCTCT TGCTTGCGCCTC TCGTTACACGTGCATTCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGA TCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCCCNCNCTGTAAAAAAAAAAAA ]
[+] EMBL AU162139 [ GCCTTCC GCCG CGGCC TCGCC GGTGCGGTTTCTCTTGGTTGATTNTNTGGGAATTG CGTAAAATGGATTAGCTCCTCTCTG TTGCGCCTCNTCGTTACACGTGCATNCGC ATTGCTCTCTAGGTGTTCGATCGGTGTTCT CAGTGGAT ACGT GTGANNCATATT TGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTGACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAA ]
consensusID : consensus_15664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[CATCAAGAAGTNCTGGCCCGAGGNCCAGTGGAGGNANATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCCCCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGGTTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCTCTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACGNNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTATACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA]
[+] EMBL AT003603 [CATCAAGAAGTNCTGGCCCGAGGNCCAGTGGAGGNANATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCCCCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGGTTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCTCTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACGNNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTATACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA]
consensusID : consensus_15664#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[ACGCGAGCTCGCGAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCCGCGTCGCCCACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCANAGGATGGGGTNCTCGATGCGGAANAAGGGGCTGCACCCGGAGATCTACGATGACGNAAGGTGTACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGNCGTTGGTCGGGGAACCACCCCTACTACGTCGNCGCACGTCGGCGATGGTCGNCATGGACAAGCATATCGAGAAGTTCCNAAGAAG]
[+] EMBL OSC9531 [ACGCGAGCTCGCGAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCCGCGTCGCCCACGAGGACCACCCTCCGCTCCCTCGTCCCCTCCCANAGGATGGGGTNCTCGATGCGGAANAAGGGGCTGCACCCGGAGATCTACGATGACGNAAGGTGTACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGNCGTTGGTCGGGGAACCACCCCTACTACGTCGNCGCACGTCGGCGATGGTCGNCATGGACAAGCATATCGAGAAGTTCCNAAGAAG]
consensusID : consensus_15664#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GGGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCCACGAGGTTTTTTTCCGCTCCCTCGTCCTTTTTTAGAGGATGCGGCGCTCTATTTTTTTTGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCG]
[+] EMBL CF293990 [GGGCGACGCGAGCGCGCGAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCCGCGGCGGCCACGAGGTTTTTTTCCGCTCCCTCGTCCTTTTTTAGAGGATGCGGCGCTCTATTTTTTTTGAAGGGGCTGCACCCGGAGATCTACGAGGACGCGAAGGTGTACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGGAACCAAGCCGGAGTACACGGTGGACGTGTGGTCGGGGAACCACCCCTACTACGTCGGCGACACGTCGGCGATGGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15664#2 ------------------------------------------------ACGCGAGCTCGC 12
consensus_15664#3 -------------------------------------------GGGCGACGCGAGCGCGC 17
consensus_15664#0 CAGAAACCGATAAGGGACACGAAACAGGGGAATCCGGAGCAAAGTGCGACGCGAGCGCGC 60
consensus_15664#1 ---------------------------------CATCAAGAAGTNCTGGCCCGAGGNCCA 27
* **** *
consensus_15664#2 GAGGAAGCAGCANCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAATCCGCC 72
consensus_15664#3 GAGGAAGCAGCAGCCATGGCGCTCTCCCTTTTCACCTCCTTCCTCCCGACCCAAGCCGCC 77
consensus_15664#0 GAGGAAGCAGCAGCCATGGCGCTCTCCCTCTCCACCTCCTTCCTCCCGACCCAAGCCGCC 120
consensus_15664#1 GTGGAGGNAN-ATNCACCCCGNCGGCGACCCGGAGTTTGACCCGGAGGANNANGGATCCC 86
* *** * * * ** ** * * * ** ** **
consensus_15664#2 GCGTCGCCCACGAGGACCAC-CCTCCGCTCCCTCGTCCCCTCCCANA--GGATGGGGTNC 129
consensus_15664#3 GCGGCGGCCACGAGGTTT-T-TTTCCGCTCCCTCGTCCTTTTTTAGA--GGATGCGGCGC 133
consensus_15664#0 GCGGCGGCCACGAGGACCAC-CCTCCGCTCCCTCGTCCCCTCCCAGA--GGATGCGGTGC 177
consensus_15664#1 CCGGCNCCAGNTNAGCCCCCGNTTCNCCTTTCGCCTCCGCCGNCGGCCTGGCCGGTGCGG 146
** * * * ** ** * * *** ** * *
consensus_15664#2 TCGATGCGGAAN-A----AGGGGCTGCACCCGGAGATCTACGATGACGN----AAGGTGT 180
consensus_15664#3 TCTATTTTTTTTGA----AGGGGCTGCACCCGGAGATCTACGAGGACGCG---AAGGTGT 186
consensus_15664#0 TCGATGCGGAAG-A----AGGGGCTGCACCCGGAGATCTACGAGGACGCG---AAGGTGT 229
consensus_15664#1 TTTNTTTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGCTTGCCGCCT 206
* * * ** *** * ** * * *
consensus_15664#2 ACTNCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 233
consensus_15664#3 ACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 239
consensus_15664#0 ACTGCAACGGGGAGCTGGTGCTGGTGACGGGGGG---AACCAAG----CCGGAGTACACG 282
consensus_15664#1 CTCGTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGANCGNTGTTCTCAGTGTANACG 266
* * * * * ** * * ** * * * * * *** ***
consensus_15664#2 GT-GGNCGT-TGGTCGGGGAACCACCC-CTACTACGTCGNCG-CACGTCGGCGATGGTCG 289
consensus_15664#3 GT-GGACGTGTGGTCGGGGAACCACCC-CTACTACGTCGGCGACACGTCGGCGATGGTCG 297
consensus_15664#0 GT-GGACGTGTGGTCGGGGAACCACCC-CTACTACGTCGGCGACACGTCGGCGATGGTCG 340
consensus_15664#1 NNTGNTCATATTTNTGGNNTNNNNCTNGTTGNTNTNTGCCTGTTNTNNTNANNNNNGNTA 326
* * * * ** * * * * * *
consensus_15664#2 NCATGGACAAGCATATCGAGAAGTTCCNAAGAAG-------------------------- 323
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 TCATGGACAGCCAGATCGAGAAGTTCCGCAAGAAGTGGGGCCACATCAAGGAGTACTGGC 400
consensus_15664#1 TACAATGGAGTTATCACATATTTTNNCCCCNTNNAAAAAAAAAA---------------- 370
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 CCGAGGACCAGTGGAGGGAGATGCACCCCGACGGCGACCCGGAGTTCGACCCGGAGGAGG 460
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 AGGGATCCGCCGGCGCCAGCTGAGCCCCCGCTTCGCCTCTCGCCTCCGCCGCCGGCCTCG 520
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 CCGGTGCGGTTTCTCTTGGTTGATTTTGGGAATTGCGTAAAATGGATTAGCTCCTCTTGC 580
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 TTGCGCCTCTCGTTACACGTGCATTCGCATTGCTCTCTAGGTGTTCGATCGGTGTTCTCA 640
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 GTGGATACGTGTGATCATATTTGTGGTATCGAACTGTTTGTTCTCTGCCTGTACTCTTTG 700
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------------------------------------------------------------
consensus_15664#3 ------------------------------------------------------------
consensus_15664#0 ACATCGATATAAAATGGAGATATTGCAATTTGCACACTCTGTAAAAAAAAAAAAAAAAAA 760
consensus_15664#1 ------------------------------------------------------------
consensus_15664#2 ------
consensus_15664#3 ------
consensus_15664#0 AACACT 766
consensus_15664#1 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||