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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1410 fasta sequence
[GATCCAACCGAATGNATGGGCCAGCGGGTAGCATATGGCGGCACACTATAAATTGGAGGCCACCCCTGTGCGTCTCGTCCCATCCAACTCATCTCAGGATCGAGTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT-CGCCG-TTTTGCTCGGCGGAGCGGCGGAGGCGCA-NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGCGGACGN-A-GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT-GATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGCCAACTCGGCCCGCGGGTTCGAGGTGATCG-ACGCCATCAAGACGCAGGTGGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGACGGCGTCAACCTGCTGGGTGGGCCAACGTGGAGCGTGGCGCTGGGGCGGAAGGACTCGCGCACGGCGAGCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCAGCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACGCCAACCTCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGG-CGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCT-CCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG-ATGATC-ACCGTCTTCGCCGACG-CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCAT-GGTAAATTATCGCAACCACGACAATGTATTTTTTTTATGATGCATGATAATACAATCCTTGCTGTTAAAGAAAAAAAAN]
[+] EMBL OSS2428A [GATCCAACCGAATGNATGGGCCAGCGGGTAGCATATGGCGGCACACTATAAATTGGAGGCCACCCCTGTGCGTCTCGTCCCATCCAACTCATCTCAGGATCGAGTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGAG GGCGGAGGCGCA GAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGG ]
[+] EMBL OSS2121A [ ATCCAACCGAATGCATGGGCCAGCGGGTAGCATATGGCGGCACACTATAAATTGGAGGCCACCCCTGTGCGTCTCGTCCCATCCAACTCATCTCAGGATCGAGTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGAG GGCGGAGGCGCA GAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGNCGTGCGGAGGN AGGCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCATGGATTGCTTAGTCAATGGATGTGACGGCTCGATCCTGCTT ]
[+] EMBL AK121950 [ CCCCTGTGCGTCTCGTCCCATCCAACTCATCTCAGGATCGAGTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGAGCGGCGGAGGCGCAGCAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGCGGACGG A GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGCCAACTCGGCCCGCGGGTTCGAGGTGATCG ACGCCATCAAGACGCAGGTGGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGACGGCGTCAACCTGCTGGGTGGGCCAACGTGGAGCGTGGCGCTGGGGCGGAAGGACTCGCGCACGGCGAGCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCAGCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACGCCAACCTCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGG CGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCT CCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATC ACCGTCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATGTGATGATATATACCAT GGTAAATTATCGCAACCACGACAATGTATTTTTTTTATGATGCATGATAATACAAT ]
[+] EMBL AU069341 [ CTCATCTCAGGATCGAGTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGA CGGCGGAGGCGCA NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGC GANGA A GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGCCAACTCGGCCCGCGGGTTCGAAGTGATCG ACGCCATC ]
[+] EMBL C22702 [ GTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGTCCGCCGTTTTTGCTCGGCGGGACGGCGGAGGCGCA NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTC ]
[+] EMBL C22703 [ GTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGA NGGCGGAGGCGCA NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGC GAGGNAA GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTNACGGCTCGATCCTGCTTGACGACANGTCGACGTTCAACGGCGAGAAGAGCGCCGGCCCGAACGGCAACTNGGCCCGCGGGTTCGAGGTGATCG ACGGCATNAAGACGCAAGTGGAGGCCTnc ]
[+] EMBL CB651230 [ GTTGTGCACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGAGCGGCGGAGGCGCAGCAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGCGGACGG A GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGCCAACTCGGCCCGCGGGTTCGAGGTGATCG ACGCCATCAAGACGCAGGTGGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGACGGCGTCAACCTGCTGGGTGGGCCAACGTGGAGCGTGGCGCTGGGGCGGAAGGACTCGCGCACGGCGAGCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCAGCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGC ]
[+] EMBL C22708 [ tTTGTGTACGTTTGTAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGA NGGCGGAGGCGCA NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGC GNGGN A GCCCCGGATGGGGGCCTCCATCCTTNGCNTCTTCTTCCAT GATTGCTTCGTNAATGGATGTAACGGCTCGATCCTGCTTGANGACACGTCGACGTTNACCGGCGAGAAGAGCGCNGGCCCGAACGGCAACTTGGCCCGCGGGTTCAAGGTGA ]
[+] EMBL OSS4607A [ GTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGA NGGCGGAGGCGCA NAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGC GACNN ANGCCCCGGATGGGGGCCTCCATNNTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTAACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGGCAACTCGGCCCGCGGGTTCAAGGTGATCGAACGGCATCAAGACGCAGGTNGAGGNCTCCTGCAA GCCACCGTCTTCTNCGGCGACAT CTTGGCCTTGACGC ]
[+] EMBL CB652759 [ CTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATCACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGT CGCCG TTTTGCTCGGCGGAGCGGCGGAGGCGCAGCAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGCCGTGCGGACGG A GCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCAT GATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACACGTCGACGTTCACCGGCGAGAAGAGCGCCGGCCCGAACGCCAACTCGGCCCGCGGGTTCGAGGTGATCG ACGCCATCAAGACGCAGGTGGAGGCCTCCTGCAAGGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGACGGCGTCAACCTGCTGGGTGGGCCAACGTGGAGCGTGGCGCTGGGGCGGAAGGACTCGCGCACGGCGAGCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCAGCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACGCCAACCTCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACA ]
[-] EMBL CB651231 [ GGCGCTGGGGCGGAAGGACTCGCGCACGGCGAGCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCAGCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACGCCAACCTCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGG CGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCT CCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATC ACCGTCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCAT GGTAAATTATCGCA ]
[+] EMBL OSR26061A [ CTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACACCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCAACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACG CAACCTCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTC ]
[+] EMBL BI810396 [ ACAACG CTA TACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGG CGGCTCGCAGGACGGCCTCGTCA GCAGTACAGCACCAACCCCTCCCAGTTCTCCT CCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCT CCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGCATGATC ACCGTCTTCGCCGACGCCCCTGGGAACC ATGCGCCGGTGAGATATC AAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCCCAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCCTCGGTAAAaaaaaaa ]
[+] EMBL C19116 [ CCACTCCGACCAGNAGCTCTTCAATGN CGGCTCGCAGNACGGCCTCGTCAGGCAGTACAGCACCAANCCCTCCCAGTTCTCCTACCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATC ACCGTCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTNCGACGCTTATATATGATGATATATACCAT GGTAAATTATCGCAAaa ]
[+] EMBL C20519 [ nATGGTTGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCT NC ACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATC ACCGTCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCAT GGTAAATTATCGCAACCACGACAATGTATTTTTTTTATGATGNATGATAATACAATCCTTGCTGTTAAAGAAAAA ]
[+] EMBL AU184729 [ GGCTCGCAGGNCGGCCTCGTCAGGCAGT CAGCNCCAACCCCTCCCAGTTCTCCT CCGACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATC ACCGTCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCAT GGTAAATTATCGCAAaaaa ]
[+] EMBL C19122 [ CCATGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCG ATGATCNACC TCTTCGCCGACG CCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCAT GGTAAATTATCGCAACCACGACAATGTATTTTTTTTATGATGCATGATAATACAATCCTTGCTGTTAAAGAAAAAAAAN]
consensusID : consensus_15671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 554 fasta sequence
[GCGCAACATCAACGCCAACCTCGCGCCGTTCGACGTGCAGACGCNCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGA-CCAGGAGCTCTTCAATGGCGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCT-CCTN-CACTTCGTCTCCGCCATGGTCAAGATGGGCAACC-TGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAA-CTA-ATTAAGGATGATA-AACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTNATNATGTGCGACGCTTATATATGATGATATATACNNTGGTNNNTTATCG--NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C20509 [GCGCAACATCAACGCCAACCTCGCGCCGTTCGACGTGCAGACGCNCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCACTCCGA CCAGGAGCTCTTCAATGGCGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCT CCTNCCACTTCGTCTCCGCCATGGTCAAGATGGGCAACC TGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAA CTA ATTAAGGATGATA AACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTAaaannn ]
[+] EMBL C19117 [ GCCTACTACCAGAACCTCGTGTCGNAGCGCGGCCTGCTCCACTCCGA CCAGGAGCTCTTCAATGGCGGCTCGNAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCT CCTN CACTTCGTCTCCGCCATGGTCAANATGGGCAACC TGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAA CTA ATTAAGGATGATA AACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCNATGCGCCGGTGANATATCAAAACACAAGAAGAGACGAANCGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTNATNATGTGCGACGCTTATATATGATGATATATACNNTGGNNNNTTATCG NAAAAAAAAAAAAAAA ]
[+] EMBL AU163222 [ CCACTCCGACCCAGGAGCTCTTCAATGGCGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCCTN CNCTTCGTCTCCGCCATGGTCAAGATGGGCAACC TGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAA CTA ATTAAGGATGATA AACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCAACCTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTAaaaaa ]
[+] EMBL C20496 [ GTACAGCACCAACCCCTCCCAGTTCT CCTN CACTTCGTCTCCGCCATGGTCAANATGGGCAACC TGCTGCCGTCCTCCGGCACCGCCACGGNGGTCAGGCTCAACTGCAGGAAGGTGAN CTN ATTAAGGATNATA AACCCCAATTCCCATCGCATTGCATTTGCNGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCNATGCGCCGGTGNNATATCAAAACACAAGNAGAGNCGAANCGTNAAATACTTGTTTGATAATGTATTACCACAAAGTGTNATNATGTNCGACGCTTATATATGATNATATATNCNNTGGTNNNTTNTCG NAAAAAAAAAAAAAAAAA ]
[+] EMBL BI808176 [ ACGTCGTTTCC CCATGGTCAAGATGGTCAACCATGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAAGCTATATTAAGGATGATAGAACCCCCATTCCCATCGCATTGCAGTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCCATGCGCCGGTG ]
[+] EMBL CF333986 [ TCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAAAGTGTAATAATGTGCGACGCTTATATATGATGATATATACCATGGTAAATTATCGCNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATNACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGTCGCCGTTTTGCTCGGCGGANGGCGGAGGCGCAGAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGNCGTGCGANNCANGCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCATGATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACANGTCGACGTTCAACGGCGAGAAGAGCGCCGGNCCGAACGGCAAATTCGGACCGCGGGTTCGAAGGTGATCGACGCATAAAGACGGAAGGTGGAGGACTTCTGAAAGNCAACGTTTCTTGCGCCGAAATCCTTGGCCTNGCCGC]
[+] EMBL AU032216 [TAGTGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGCCGGAGTGGTGATNACCGGGCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGTCGCCGTTTTGCTCGGCGGANGGCGGAGGCGCAGAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTGCGGTCCGGGATGGCGTCCGNCGTGCGANNCANGCCCCGGATGGGGGCCTCCATCCTTCGCCTCTTCTTCCATGATTGCTTCGTCAATGGATGTGACGGCTCGATCCTGCTTGACGACANGTCGACGTTCAACGGCGAGAAGAGCGCCGGNCCGAACGGCAAATTCGGACCGCGGGTTCGAAGGTGATCGACGCATAAAGACGGAAGGTGGAGGACTTCTGAAAGNCAACGTTTCTTGCGCCGAAATCCTTGGCCTNGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15671#0 GATCCAACCGAATGNATGGGCCAGCGGGTAGCATATGGCGGCACACTATAAATTGGAGGC 60
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 CACCCCTGTGCGTCTCGTCCCATCCAACTCATCTCAGGATCGAGTTGTGTACGTTTGTAG 120
consensus_15671#2 ---------------------------------------------------------TAG 3
consensus_15671#1 -----------------GCGCAACATCAACGCCAACCTCGCGCCGTTCGACGTGCAGACG 43
*
consensus_15671#0 TGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGC------CGGAGTGGTGATCACCGG 174
consensus_15671#2 TGTGCTGCTCTCTCTGCTACCTTGTGTCGAGATGGC------CGGAGTGGTGATNACCGG 57
consensus_15671#1 CNCGACGCCTTCGACAACGCCTACTACCAGAACCTCGTGTCGCAGCGCGGCCTGCTCCAC 103
* ** ** *** * * * * * * * ** **
consensus_15671#0 GCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGTCGCCGTTTTGCTCGGCGGAGCGGCGGA 234
consensus_15671#2 GCGGGCCTTGGTGGCCGCCGTCGCTGTCGTGGTCGCCGTTTTGCTCGGCGGAN-GGCGGA 116
consensus_15671#1 TCCGACCAGGAGCTCTTCAATGGCGGCTCGCAGGACGGCCTCGTCAGGCAGTACAGCACC 163
* * ** * * * * ** * * * * * *** * **
consensus_15671#0 GGCGCANAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTG 294
consensus_15671#2 GGCGCAGAGCTGTCCCCCAACTTCTACTCGAGGACGTGCCCCAACCTGGCCACCATCGTG 176
consensus_15671#1 AACCCCTCCCAGTTCTCCTNCACTTCGTCTCCGCCATGGTCAAGATGGGCAACCTGCTGC 223
* * * ** * ** * * ** * * ** * * *** *** *
consensus_15671#0 CGG--TCCGGGATGGCGTCCGCCGTGCGGACGNAGCCCCGGATGGGGGCCTCC------A 346
consensus_15671#2 CGG--TCCGGGATGGCGTCCGNCGTGCGANNCANGCCCCGGATGGGGGCCTCC------A 228
consensus_15671#1 CGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACTGCAGGAAGGTGAACTAATTAAGGA 283
** ***** * ** * * ** * * *** ** * ** *
consensus_15671#0 TCCTTCGCCTCTTCTTCCATG--ATTGC-TTCGTCAATGGATGTGACGGCTCG--ATCCT 401
consensus_15671#2 TCCTTCGCCTCTTCTTCCATG--ATTGC-TTCGTCAATGGATGTGACGGCTCG--ATCCT 283
consensus_15671#1 TGATAAACCCCAATTCCCATCGCATTGCATTTGCAGGTGATCATTTCCGATGATCACCGT 343
* * ** * * **** ***** ** * ** * * * * * * *
consensus_15671#0 GCTTGACGACACGTCGACGTTCAC-----CGGCGAGA----AGAGCGCCGGCCCGAACGC 452
consensus_15671#2 GCTTGACGACANGTCGACGTTCAA-----CGGCGAGA----AGAGCGCCGGNCCGAACGG 334
consensus_15671#1 CTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAGATATCAAAACACAAGAAGAGACG- 402
* * **** * ** *** **** * * * * * ***
consensus_15671#0 CAA-CTCGGCCCGCGGGTTCGA-GGTGATCGACGCCATCAAGACGCA-GGTGGAGGCCTC 509
consensus_15671#2 CAAATTCGGACCGCGGGTTCGAAGGTGATCGACGC-ATAAAGACGGAAGGTGGAGGACTT 393
consensus_15671#1 -AAACGTGAAATACTTGTTTGATAATG--TATTACCACAAAGTGTNATNATGTGCGACGC 459
** * * *** ** ** * * *** * ** * *
consensus_15671#0 CTGCA-AGGCCACCGTCTCCTGCGCCGACATCCTCGCCCTCGCCGCCCGCGACGGCGTCA 568
consensus_15671#2 CTG-A-AAGNCAACGTTTCTTGCGCCGAAATCCTTGGCCTNGCCGC-------------- 437
consensus_15671#1 TTATATATGATGATATATACNNTGGTNNNTTATCGNAAAAAAAAAAAAAAAAAAAAAAAA 519
* * * * * * * *
consensus_15671#0 ACCTGCTGGGTGGGCCAACGTGGAGCGTGGCGCTGGGGCGGAAGGACTCGCGCACGGCGA 628
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------- 554
consensus_15671#0 GCCAGAGCGCGGCGAACAGCAACCTGCCGGGGCCCGGGTCGAGCCTCGCCACGCTCATCA 688
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 GCATGTTCGGCAACCAGGGCCTCTCGGCGCGCGACATGACGGCGCTGTCGGGCGCCCACA 748
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 CCATCGGCCGCGCCCAGTGCCAGTTCTTCCGCAGCCGCATCTACACCGAGCGCAACATCA 808
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 ACGCCTCCTTCGCGTCGCTCCGGCAGCAGACGTGCCCGCGCTCCGGCGGCGACGCCAACC 868
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 TCGCGCCGTTCGACGTGCAGACGCCCGACGCCTTCGACAACGCCTACTACCAGAACCTCG 928
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 TGTCGCAGCGCGGCCTGCTCCACTCCGACCAGGAGCTCTTCAATGGCGGCTCGCAGGACG 988
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 GCCTCGTCAGGCAGTACAGCACCAACCCCTCCCAGTTCTCCTCCGACTTCGTCTCCGCCA 1048
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 TGGTCAAGATGGGCAACCTGCTGCCGTCCTCCGGCACCGCCACGGAGGTCAGGCTCAACT 1108
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 GCAGGAAGGTGAACTAATTAAGGATGATAAACCCCAATTCCCATCGCATTGCATTTGCAG 1168
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 GTGATCATTTCCGATGATCACCGTCTTCGCCGACGCCCTGGGAACCAATGCGCCGGTGAG 1228
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 ATATCAAAACACAAGAAGAGACGAAACGTGAAATACTTGTTTGATAATGTATTACCACAA 1288
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 AGTGTAATAATGTGCGACGCTTATATATGATGATATATACCATGGTAAATTATCGCAACC 1348
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 ACGACAATGTATTTTTTTTATGATGCATGATAATACAATCCTTGCTGTTAAAGAAAAAAA 1408
consensus_15671#2 ------------------------------------------------------------
consensus_15671#1 ------------------------------------------------------------
consensus_15671#0 AN 1410
consensus_15671#2 --
consensus_15671#1 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||