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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_157#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1385 fasta sequence
[CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG]
[+] EMBL AK108574 [CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG]
consensusID : consensus_157#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760945 [CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_157#0 CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGC 60
consensus_157#1 ------------------------------------------------------------
consensus_157#0 TGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCG 120
consensus_157#1 ------------------------------------------------------------
consensus_157#0 CCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGT 180
consensus_157#1 ------------------------------------------------------------
consensus_157#0 CTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCC 240
consensus_157#1 ------------------------------------------------------------
consensus_157#0 TTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCC 300
consensus_157#1 ------------------------------------------------------------
consensus_157#0 TCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTC 360
consensus_157#1 ------------------------------------------------------------
consensus_157#0 CCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGC 420
consensus_157#1 ------------------------------------------------------------
consensus_157#0 AAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGA 480
consensus_157#1 ------------------------------------------------------------
consensus_157#0 ATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTG 540
consensus_157#1 ------------------------------------------------------------
consensus_157#0 GTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTG 600
consensus_157#1 ------------------------------------------------------------
consensus_157#0 GCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACA 660
consensus_157#1 ------------------------------------------------------------
consensus_157#0 ATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGC 720
consensus_157#1 --------------------------------------------------------CGGC 4
***
consensus_157#0 GAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTG 780
consensus_157#1 GAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTG 64
******************* *************************** ** ********
consensus_157#0 ATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGG-TAGTTCCC 839
consensus_157#1 ATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCC 124
**** * ******************************************** ********
consensus_157#0 TTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATG 899
consensus_157#1 TTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATG 184
**** ************************************ ** ***************
consensus_157#0 CATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTA 959
consensus_157#1 CATTT-GGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTA 243
***** ****** *********************************** **********
consensus_157#0 TTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATG 1019
consensus_157#1 TTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATG 303
*********** ******************* ********************* ******
consensus_157#0 TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCC 1079
consensus_157#1 TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCC 363
************************************************* *********
consensus_157#0 GTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 1139
consensus_157#1 GTACATCATGGCATGGCCTCCTT-TTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 422
*************** ******* ************************************
consensus_157#0 GGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCT 1199
consensus_157#1 TGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTT 482
************************************* ****************** *
consensus_157#0 ATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGA 1259
consensus_157#1 TCGAACCCC--TGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGA 540
***** * ******** *********************** *********** ***
consensus_157#0 TTT---TTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGG 1316
consensus_157#1 TTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGG 600
*** *** ***** ***** ************** ***********************
consensus_157#0 GTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTA 1376
consensus_157#1 GGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAA 660
* ** ******************************************* ** ** *
consensus_157#0 GTCAAGTTG 1385
consensus_157#1 AAAA----- 664
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||