These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence [TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT] [+] EMBL CF329030 [TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGA ] [-] EMBL CF329029 [ TGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT] consensusID : consensus_15703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 743 fasta sequence [AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC-AACAGTGGAAA-CTTG-AAAAACTGCATCCGC-AAAGAACTGAAGTTGAACTAA-TCTTGTTT--GTT-CTCC-AATGCTTCC-AGCCC--TTGC--TTGGA-TTTGTACTT-CCATTGCTGGTC-AGCATCATGATGGAGGCTGGAGCATCAGCAACC-TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG-T-GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA] [+] EMBL CB633035 [AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG TGGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTT ] [-] EMBL CF312315 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGCCTTTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCCTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGAGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA] [-] EMBL CB633034 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGG ] [-] EMBL AK111314 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGG ] [-] EMBL CA764627 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGG TTGGTCAAGGAAAGGGCAGGGGCCGCCG T ] [-] EMBL CB667243 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGC ] [-] EMBL AU174868 [ AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACCTTTGNGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAA ] [-] EMBL AU162061 [ AAACCGAATCTAACCCACTTGATACTACCGTGCTTCTGCAACAAACAGTGGAAACCTTG AAAAACTGCATCCGCAAAAGAACTGAAGTGGAACTAA CCTTGTTT GTC CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGANAAAATTGGATCGAAACAACTTATGCAANACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCC CCGNT G CGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAANAAAAACG ] [-] EMBL OSC8021 [ AACAGTGGAAACCTTGAAAAAACTTCATCCNC AAAGAACTNAAGTGGAACTAANCCTTGTTTTGGTTCCTCCAAATGCTTCCAAGCCCCTTTGC TTGGANTTTGTACTTCCCATTGCTGGTCAACCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCG CG T GCC GCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACG ] [-] EMBL AU174869 [ AACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT GTT CTCC AATGCTTCC AGCCC TTGC TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTG ] consensusID : consensus_15703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 677 fasta sequence [TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC-TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA] [+] EMBL CF334580 [TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCNTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGG ] [-] EMBL CF335669 [ TTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTT ] [+] EMBL CF335786 [ ttttttTAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACG ] [-] EMBL CB679991 [ TGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGAATGCTGTCGAC ] [-] EMBL CF302129 [ tTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGANAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACCAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCAAGCTTTGGTTGAGGAAAG ] [+] EMBL CF302128 [ ttTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGC ] [-] EMBL CF317486 [ CACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAA ] [-] EMBL CF334579 [ TGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAG ] [-] EMBL CF335785 [ GATTCTATCATCGCTCAGATCCCAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCT GGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA] consensusID : consensus_15703#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 414 fasta sequence [AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC] [-] EMBL CA766646 [AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC] consensusID : consensus_15703#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 192 fasta sequence [AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG] [-] EMBL CF336244 [AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG] [+] EMBL CF336245 [ TTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAAAAATGCCCTTCTTTTATTAATAAAAAATACTCAATTACCTTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAATCCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15703#0 ------------------------TTTTTTAATAGAAAA-TACTCAATTACATTGATTCT 35 consensus_15703#2 TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAA-TACTCAATTACATTGATTCT 59 consensus_15703#1 ------AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCT 54 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 84 consensus_15703#2 TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 108 consensus_15703#1 TCAGTTTACATATACTTTTGTAGTACAA-AGTGGAGCTGAAAAGTTGACAAAAAATTCCT 113 consensus_15703#4 AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGT-----------------TTTTT 43 consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 144 consensus_15703#2 CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 168 consensus_15703#1 CTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAG 173 consensus_15703#4 TTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAA 103 consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 203 consensus_15703#2 ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 227 consensus_15703#1 ATCGAAACGATAAAAACATAA-AAGACAACACATGTTCTTGAAAACGAATCTAAACCACT 232 consensus_15703#4 ATAAAAATGCCATTCTATTATTAATAGAAAATAC-TCAATTACATTGATTCT---TCATT 159 consensus_15703#3 ---------------------------AACACATGTTCTTGAAAACGAATCTAAACCACT 33 ** * * * * * * * *** ** * consensus_15703#0 TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 263 consensus_15703#2 TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 287 consensus_15703#1 TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 284 consensus_15703#4 TTACATTACATTGATTCTACTCCT-CAGTCCATG-------------------------- 192 consensus_15703#3 TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 85 * * ** ** **** * * **** * consensus_15703#0 CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTT 323 consensus_15703#2 CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGC----- 342 consensus_15703#1 CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCTT--- 341 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTT 145 consensus_15703#0 GAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCA 383 consensus_15703#2 ------------------------------------------------------------ consensus_15703#1 ------------------------------------------------------------ consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 GAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCC 205 consensus_15703#0 TGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGAT 443 consensus_15703#2 ------------------------------------------------TTGGATCATGAT 354 consensus_15703#1 -------------------------GGATTTGTACTTCCATTGCTGGTCAGCATCATGAT 376 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 AACAAAAGAACTAAATCAGGAAT---ACTTGAATAATTCAGTCCTCATTCGACAAATCTC 262 consensus_15703#0 GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 503 consensus_15703#2 GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 414 consensus_15703#1 GGAGGCTGGAGCATCAGCAACCTTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGC 436 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 AAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATG 322 consensus_15703#0 TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 562 consensus_15703#2 TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 473 consensus_15703#1 TGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAAC 496 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 TAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACAC 382 consensus_15703#0 TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 622 consensus_15703#2 TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 533 consensus_15703#1 TTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAG 556 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 TTTCAAGTAATAAATCCCCCCTTGTCTCGTCC---------------------------- 414 consensus_15703#0 AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 682 consensus_15703#2 AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 593 consensus_15703#1 AGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGG 616 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 729 consensus_15703#2 AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 640 consensus_15703#1 AAAGGGCAGGGGCCGCCGTGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAG 676 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 AAAAAC-------TTTCTACTCCTTCAGTCCAT--------------------------- 755 consensus_15703#2 AAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA----------------------- 677 consensus_15703#1 AAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTA 736 consensus_15703#4 ------------------------------------------------------------ consensus_15703#3 ------------------------------------------------------------ consensus_15703#0 ------- consensus_15703#2 ------- consensus_15703#1 TTGGGCA 743 consensus_15703#4 ------- consensus_15703#3 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||