|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1206 fasta sequence
[TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG-AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA-GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG-TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT-CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA-CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG-AAATG-CCCTACTTGC-AGAAAGA-GTCTGAGGGCGAACAAT-T-TCCA-CCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA-GGAGTTCTCCCATAACGTGTACCA-TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAATGAAAAAACTCGTTAAAAAAAAAAAAAAAA]
[+] EMBL CF278445 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTG ]
[+] EMBL CF280837 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGAT AAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAANGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACT ]
[+] EMBL CF318488 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTATCAA ]
[+] EMBL CF280106 [ TCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTG ]
[+] EMBL AK073887 [ CTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTG ]
[+] EMBL CF294695 [ TTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGGCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGGCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCNAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCNCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAA ]
[+] EMBL OSS14681A [ TCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAGAAAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGNTCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATT ]
[+] EMBL OSC14811 [ tttggggAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTTAGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGC ]
[+] EMBL AK104052 [ AGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCAAGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTG ]
[+] EMBL CA305678 [ ACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGATCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGA ]
[+] EMBL CA763292 [ TGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAATTTGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTG ]
[+] EMBL C28195 [ GGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGNTTGAAGACTAGCAATNAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGNCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTNAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTNGATGTACCca ]
[+] EMBL AU163266 [ GGAATTAGATGCTA CCGGGAA GGNAC AACGTCAAA GGTTGCACNTGTTATACA TGCTTNTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCNTCNTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAA ]
[+] EMBL BI806380 [ nCAC ACATATTGCGGCCANATCGTCTGCATCGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAAATGCCCCTACTTGCAAGNAAGAGGTCTGAGGGCGAACCATGTGTCCA CCGTATTTACCTT CCAAACTCTGATA TTAAGGCTCATTGGATGTACCCAAGGAACTTCTGNCAGCAGCCACAGCATCCTCCAATCTAATATATTCAGAGGAACANGGAGTTCTCCCATAACGTGTACCACTTTTGCTGTGGAATTGTGTCACGGC AAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACAC ACCCCACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTA CCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTAaaaaaaaaa ]
[+] EMBL AU164557 [ GCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGGTGTATTTACCATGCGTTTGGCCATGT CCTTACCTTCTCTtc ]
[+] EMBL AU164558 [ CATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGAAAAAA ]
[-] EMBL CF329184 [ TCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCANCCGTATTTACCTTCCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTTTGGCAGCAGCAGCAGCATCCTCCAATTTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTAaaaaaa ]
[+] EMBL AA752505 [ cgagGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACAAGGAGCTCATCAGCTGCAGGTGACAACTCTGG ]
[+] EMBL D43165 [ TGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTtc ]
[+] EMBL CA756559 [ GGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATA GTTGATGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCGTTAAAAAAAAAAAAAAAA]
[-] EMBL CF294696 [ AACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTTTGGTTTAGGCTACCGAATGGCCTCTTTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCAATACATGTTTAAAAA AAAAA ]
consensusID : consensus_15709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence
[CGCCGCTGGATTCGAGATTTCGACCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGGTCCTGGTGATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA]
[+] EMBL BI799715 [CGCCGCTGGATTCGAGATTTCGACCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGGTCCTGGTGATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA]
consensusID : consensus_15709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGAACTTTTGNCAGCAGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCAAAAA]
[-] EMBL CF280105 [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGAACTTTTGNCAGCAGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCAAAAA]
consensusID : consensus_15709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCACCCAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTAAAAAAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCGTCTTTCTAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA]
[-] EMBL CF280838 [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCACCCAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTAAAAAAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCGTCTTTCTAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG 60
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAG 120
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 GATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGA 180
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 GTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATA 240
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 AAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGC 300
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 CGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGC 360
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 AGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGC 420
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 CTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGG 480
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 TTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTA 540
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 ------------------------------------------------------------
consensus_15709#3 ------------------------------------------------------------
consensus_15709#0 GCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGT 600
consensus_15709#1 ------------------------------------------------------------
consensus_15709#2 -------------------------------------------------CATCAAGCAAG 11
consensus_15709#3 -------------------------------------------------CATCAAGCAAG 11
consensus_15709#0 TGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAG 660
consensus_15709#1 -------------------------------------CGCCGCTGGATTCGAGATTTCGA 23
* *
consensus_15709#2 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 69
consensus_15709#3 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 69
consensus_15709#0 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 718
consensus_15709#1 CCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGT 83
*** **** ** * * *** * *** * * ** ** * * *
consensus_15709#2 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGG--------------------AAC 108
consensus_15709#3 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAAC 128
consensus_15709#0 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAAC 777
consensus_15709#1 CAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAA---GATGGTCCTGGTGATAAAGT 140
* * * * * * * ** * * * * * *
consensus_15709#2 TTTTGNCAGC--AGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGA--GTT 164
consensus_15709#3 TTCTGGCAGC--AGCAGCAGCATCCTCCAATCT-AATATATTCAGAGGAACAGGA--GTT 183
consensus_15709#0 TTCTGGCAGC--AGCAGCAGCATCCTCCAATCT-AATATATTCAGAGGAACAGGA--GTT 832
consensus_15709#1 CGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGAC 200
** * * * ** ****** * * * * * * * * *
consensus_15709#2 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 224
consensus_15709#3 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 243
consensus_15709#0 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 892
consensus_15709#1 CTCCACTGGTGCGCGTGCCTCCCCCATTGA--TGTGGAAGCTCTGGATGATGAAGTGCAG 258
**** * * * * * * ** **** * * **** * * *
consensus_15709#2 CCGCATGTTCATC-CAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATC 283
consensus_15709#3 CCGCATGTTCACC-CAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATC 302
consensus_15709#0 CCGCATGTTCATC-CAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATC 951
consensus_15709#1 ACAT-TGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCC 317
* *** * * * * * * * * * ** ***** *
consensus_15709#2 AGCTGCAGGTGACAACTCTGGTTTAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 340
consensus_15709#3 AGCTGCAGGTGACAACTCTAAAAAAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 359
consensus_15709#0 AGCTGCAGGTGACAACTCTGGTTTAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 1008
consensus_15709#1 TGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGT 377
* **** * * ** **** *** * * ** ** **
consensus_15709#2 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 398
consensus_15709#3 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 417
consensus_15709#0 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 1066
consensus_15709#1 TGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAG 437
* *** * * * *** * ** *** ** ** *** ***
consensus_15709#2 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCTTC-----TCTCCATAGTTGTTG 450
consensus_15709#3 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCGTC-----TTTCTAAAAAAAAAA 469
consensus_15709#0 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCTTC-----TCTCCATAGTTGTTG 1118
consensus_15709#1 CATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTG 497
* * * ** * * ** * ** ** * * *
consensus_15709#2 ACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTG 510
consensus_15709#3 AAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA--------------------- 508
consensus_15709#0 ACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAATG 1178
consensus_15709#1 GAGGAGCCCTCCACAACAATTTGCG-GCCATATCTTCTGCACGACATGCATCAAGCAAGC 556
* * * *
consensus_15709#2 CTTGTACTCAAAAA--------------------------------- 524
consensus_15709#3 -----------------------------------------------
consensus_15709#0 AAAAAACTCGTTAAAAAAAAAAAAAAAA------------------- 1206
consensus_15709#1 CATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA 603
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||