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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15710#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1177 fasta sequence
[CTGTACCCCCGCCGCGGCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTTAGAGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGCGGCGGCCGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA-GCTCTC-GGTCGGGCCGACGCCGA-GCTCGCCGCCG-GCGGAGACGCCCACCAG-CGCGCGGCCG-GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA-TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTGTTCATATTTCTTACTATTATCCAATCTTCATGATCTCAATCTCTCTCTCTCTTTATTATTTTTCTTTGTAGTAATTAACTTCATGTTGGTTCCTCTAAAAAAGATTGGTCGATGTTATTCAGTGATAA]
[+] EMBL AK099108 [CTGTACCCCCGCCGCGGCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTTAGAGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTGAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGCGGCGGCCGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATAAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACT ]
[+] EMBL AK066834 [ GTACCCCCGCCGCGGCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTT AGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGCGGCGGCCGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCACCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTGTTCAT ]
[+] EMBL AK104053 [ CGCCGCGGCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTTAGAGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGCGGCGGCCGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAG AAAAAAAAGGGAAAGA ]
[+] EMBL AU070855 [ GCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTTAGAGCGCGGGGCCATGGGGANGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCANCGGCTCATCGCGTACATCAGGGCGCATGGCGAANGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCAT ]
[+] EMBL D88617 [ CTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGCTAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTTAGAGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTGCTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCGGTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGAGCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAA GCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGCGGCGGCCGCGGCGATCTTCGCCGT GCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAG AAAAAAAAGGGAAAGAAAAAGGTTCTAATCTGTTCATATTTCTTACTATTATCCAATCTTCATGATCTCAATCTCTCTCTCTCTTTATTATTTTTCTTTGTAGTAATTAACTTCATGTTGGTTCCTCTAAAAAAGATTGGTCGATGTTATTCAGTGATAA]
[+] EMBL CB967212 [ ggaataGCTGCGG CGCGGCGATCTTCGCCG GGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAA ]
[+] EMBL CB964622 [ ggaatagcGCGG CGCGG GATC TCGCCGTGGCGAAG CG CG CG CGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG ]
[+] EMBL CB965282 [ gggaatagcGCGG CGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG ]
[+] EMBL CB964991 [ CGGCGATCTTCGCCGTGGCGAAGCCGCCG CGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG ]
[+] EMBL CB965463 [ TTCGCCGTGGCGAAGCCGCCG CG CGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCGCGCGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGACATATGACCCTGAGATGTGAGATGGCTTGCTTAGCTTCACTTCCCAACATGTGTAACACAGGGAGTTTTGCTAGTGGACGACAATACTGTTTAACTTTCCGAAAAAAAAAGGGAAAGAAAAAGGTTCTACTCTGTTCct ]
[+] EMBL CB967374 [ TTCGCCGTGGCGAAGCCGCCG CGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG ]
[+] EMBL CB964606 [ TTCGCCGTGGCGAAGCCG CGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGACGCTCTCTGGTCGGGCCGACGCCGATGCTCGCCGCCGCGCGGAGACGCCCACCAGTCGCGCGGCCGTGTCTGCac ]
[+] EMBL BI306059 [ CGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTTTCTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTGTTCATATTT ]
[+] EMBL CB965783 [ CGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGA GCTCTC GGTCGGGCCGACGCCGA GCTCGCCGCCG GCGGAGACGCCCACCAG CGCGCGGCCG GTCTGCCTCTGCTACCACCTCGGCTTCCGCGGCGGGGAGGCGTGCAGCTGTCAGGCTGACAGCAAGGGCCCACACGAGTTTAGATATTTCAGGCCGTTGGAACAAGGCCAGTACATATGAGATATGACCATGAGATGTGAGATGGCTTAATTAGCTTCAATTCCCAACATGTGTAACACAGGGAGTTTAACTAGTGGACGACAATACTGTTTAA TTTCAGAAAAAAAAAGGGCAAGAAAAAGGTTCTAATCTG ]
consensusID : consensus_15710#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1037 fasta sequence
[TACTACTAGTACAAAACCAACGCGAAGCTCTCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTGAGCCGGGGCATCGACCCGCAGACGCACCGGCCGGTCAGCGCCGGGAGCA-GCGCCGCCGCGGCGAGCGGGCTGACCACGACGGCCAGCACCGCCGCCTTTCCGTCCCTTGCGCCGGCGCCGCCGCCGCAGCAGCACAGGCTACACAACCCGGTGCACGCCGCGGCGCCGAGCAATGCGAGCTTCGCCAGGTCCGCGGCGTCCCCGCCGTCGGAGGACGGCCACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACCTCAACCTCGACCTCGACCTCGACCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCGGCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACCACCAGCAGCAGAAGACCATCTGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTGCAGCTGCAAGGCGGCCGCGCCATCGCCGGCCGGCCCACGCGCGTTCCGGTTTCTCAGGCCACTGGAGGAGGGCCAGTACATATAGCACAGCAGGCTTTAGGGAAAAAAAACCTGTAAAAAACACAAAAAAAAACGGTGGGCAATAGAGTTTTTTCTAAGTTCTAAAAAAAA]
[+] EMBL AK060684 [TACTACTAGTACAAAACCAACGCGAAGCTCTCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTGAGCCGGGGCATCGACCCGCAGACGCACCGGCCGGTCAGCGCCGGGAGCA GCGCCGCCGCGGCGAGCGGGCTGACCACGACGGCCAGCACCGCCGCCTTTCCGTCCCTTGCGCCGGCGCCGCCGCCGCAGCAGCACAGGCTACACAACCCGGTGCACGCCGCGGCGCCGAGCAATGCGAGCTTCGCCAGGTCCGCGGCGTCCCCGCCGTCGGAGGACGGCCACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACCTCAACCTCGACCTCGACCTCGACCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCGGCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACCACCAGCAGCAGAAGACCATCTGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTGCAGCTGCAAGGCGGCCGCGCCATCGCCGGCCGGCCCACGCGCGTTCCGGTTTCTCAGGCCACTGGAGGAGGGCCAGTACATATAGCACAGCAGGCTTTAGGGAAAAAAAACCTGTAAAAAACACAAAAAAAAACGGTGGGCAATAGAGTTTT ]
[+] EMBL AF467734 [ AAGCTCTCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCCAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCC GGGAGGACGGAC ACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCT CTGAGCCGGGGCATTGACCCGCAGACGCACCGGCCGGTCA CGCC GGAACACGCCCCCCCG GGAAAACGGGCTTA CACGACGG CAACACCG CG CTTTTCGT CCTTGGCCCGGGGCCGCCGCCGAAGAAG ACAGGCTA A AACCCGG GCACGCC CGGGGGCCAACATTGC AGCTTt ]
[+] EMBL AU183276 [ GCTCTCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTGAGCCGGGGCATCGACCCGCA ]
[+] EMBL AU082180 [ CTCTCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACNACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACAAGTGGTCGT ]
[+] EMBL C73695 [ TCGTCGCGCACAACCAACTCGACACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGNCCTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTTGAACACGNACATCAAGCG AAGTTCCTGA ]
[+] EMBL AU082181 [ TCAGCGCCGGGAGCA GCGCCGCCGCGGCGAGCGGGCTGACCACGACGGCCAGCACCGCCGCCTTTCCGTCCCTTGCGCCGGCGCCGCCGCNGCAGCAGCACAGGCTACACAACCCGGTGCACGCCGCGGCGCCGAGCAATGCGAG TTCGCCAGGTCCGCGGCGTCCCCGCCGTCGGAGGACGGCTACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACCTCAACCTCGACCTCGACCTCGACCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCGGCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACCACCAGCAGCAGAAGACCATCTGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTG ]
[+] EMBL AU082323 [ TCCGCGGCGTCCCCGCCGTCGGAGGACGGCCACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACNTCAACCTCGACCTCGACCTCGACCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCGGCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACCACCAGCAGCAGAAGACCATCTGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTGCAGCTG ]
[+] EMBL CF304061 [ GGCCGGCCCACGCGCGTTCCGGTTTCTCAGGCCACTGGAGGAGGGCCAGTACATATAGCACAGCAGGCTTTAGGGAAAAAAAACCTGTAAAAAACACAAAAAAAGACGGTGGGCAATAGAGTTTTTTCTAAGTTCTAAAAAAAA]
consensusID : consensus_15710#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence
[TTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGAGCTCTCGTGTCGGGCCGACGCCGAGCTCGCCGCCGGCGGAGACGCCCACNCAGCGCTGCGGCCTGTGTCTGCNNCTCTGCTACCACCTCGTGCTTCCTGCGTGCGTGGTGCGTGCTGTGCATGCTGTCAGTGCGTGACATGCAATGGTGCCCAGCACGACGTTTACGATNCNATTTCAGTGCCTGTTGTGAACAAGGCNNCAGTACATCTGAGATATGCACCATGAGATGTGACGATGGCTTACATTAGCTTCAATTCCCANACATGTGTAACACAGGGGAGTTTTTCTACGTGGACGACAATACTGTTTAATTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG]
[+] EMBL CB965549 [TTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGCCCGGTCGACTCCTCGGACGACGGCTGCCGCAGCAGCAGCGGCACAACGAGCACGGGGGAGCCGCGGTGCCCCGACCTCAACCTCGAGCTCTCGTGTCGGGCCGACGCCGAGCTCGCCGCCGGCGGAGACGCCCACNCAGCGCTGCGGCCTGTGTCTGCNNCTCTGCTACCACCTCGTGCTTCCTGCGTGCGTGGTGCGTGCTGTGCATGCTGTCAGTGCGTGACATGCAATGGTGCCCAGCACGACGTTTACGATNCNATTTCAGTGCCTGTTGTGAACAAGGCNNCAGTACATCTGAGATATGCACCATGAGATGTGACGATGGCTTACATTAGCTTCAATTCCCANACATGTGTAACACAGGGGAGTTTTTCTACGTGGACGACAATACTGTTTAATTTCAGAAAAAAAAAGGGAAAGAAAAAGGTTCTAATCTG]
consensusID : consensus_15710#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[TCCCTCCCCCCGTCTCCGGCGCCGCCGCCACCGATCGATGGAGCATTCATCAATTCCTTGTGATTCTCAATTCGGTTTCGCTTCTTCTTTCAGGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAA]
[+] EMBL AU082166 [TCCCTCCCCCCGTCTCCGGCGCCGCCGCCACCGATCGATGGAGCATTCATCAATTCCTTGTGATTCTCAATTCGGTTTCGCTTCTTCTTTCAGGTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCATCGCGGCGAGCAACAAGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 CTGTACCCCCGCCGCGGCTCACCTGGAAACTGGGCAGATTGGACAATCGCTCGAGCGAGC 60
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 TAGCGAGAGAGAGCGCGAGAGAGCGAGGCGGCGCGCGCGGTGGTTGCGGATTTGTAGCTT 120
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 AGAGCGCGGGGCCATGGGGAGGTCGCCGTGCTGCGAGAAGGCGCACACGAACAAGGGGGC 180
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GTGGACGAAGGAGGAGGACCAGCGGCTCATCGCGTACATCAGGGCGCATGGCGAAGGCTG 240
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 CTGGCGCTCGCTGCCCAAGGCGGCGGGCCTCCTTCGCTGCGGCAAGAGCTGCCGCCTCCG 300
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ------------------------------------------------------------
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GTGGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGAGGACGA 360
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 --------TACTACTAGTACAAAACCAACGCGAAGCTCTCGTCGCGCACAACCAACTCGA 52
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GCTCATCATCCGCCTCCACAGCCTCCTCGGCAACAAGTGGTCTCTGATCGCCGGGCAGCT 420
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 CACCGCGGCGAGGCGAACCAACGCGCGGCGTGGGCATGGGGAGGTCGCCATGCTGCGAGA 112
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAAGCGCAAGCT 480
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 AGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACA 172
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 CCTCGCCCGCGGCATCGACCCGCAGACGCACCGCCCGCTGCTCAGCGGCGGTGACGGCAT 540
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 TCAAGGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCT 232
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 CGCGGCGAGCAACAAGGCGGCACCACCGCCGCCGCATCCCATATCCGTCCCGGCGAAGGC 600
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 GCGGCAAGAGCTGCCGCCTCCGCTGGATGAACTACCTCCGCC-CCGACCTCAAGCGCGGC 291
consensus_15710#3 -------------TCCCTCCCCCCGTCTCCGGCGCCGCCGCCACCGATC---GATGGAGC 44
consensus_15710#0 GGCGGCCGCGGCGATCTTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGC-----CCGGTC 655
consensus_15710#2 ----------------TTCGCCGTGGCGAAGCCGCCGCCGCCGCCGCGC-----CCGGTC 39
* * ** ***** *** * *
consensus_15710#1 AACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCCCTTCTCGGCAACA-A 350
consensus_15710#3 A--TTCATCAATTCC--TTGTGA-TTCTCAATTCGGTTTCGCTTCTTCTTT-----CA-G 93
consensus_15710#0 GACTCCTCGGACGACGGCTGCCGCAGCAGCAGC-GGCACAACGAGCACGGGGGAGCCGCG 714
consensus_15710#2 GACTCCTCGGACGACGGCTGCCGCAGCAGCAGC-GGCACAACGAGCACGGGGGAGCCGCG 98
* * * * * * * * *
consensus_15710#1 GTGGTCGTTGATTGCGGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTG 410
consensus_15710#3 GTGGTCTCTGATCGCCGGGCAGCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTG 153
consensus_15710#0 GTGCCCCGACCTCAACCTCGAGCTCTCG-GTCGGGCCGACGCCGAGCTCGCCGCCGGCGG 773
consensus_15710#2 GTGCCCCGACCTCAACCTCGAGCTCTCGTGTCGGGCCGACGCCGAGCTCGCCGCCGGCGG 158
*** * * **** ** * ** * *** **** ** * * *
consensus_15710#1 GAACACGCACATCAAGC----GCAAGCTCCTGAGCCGGGGCATCGACCCGCAGACGCACC 466
consensus_15710#3 GAACACGCACATCAAGC----GCAAGCTCCTCGCCCGCGGCATCGACCCGCAGACGCACC 209
consensus_15710#0 AGACGCCCACC-AGCGC-GCGGCCGGTCT----GCCTCTGCTACCACCT-CG-GCTTCC- 824
consensus_15710#2 AGACGCCCACNCAGCGCTGCGGCCTGTGTCTGCNNCTCTGCTACCACCT-CGTGCTTCCT 217
** * *** ** ** * * ** * *** * * *
consensus_15710#1 GGCCGGTCAGCGCCGGGAGCA-GCGCCGCCGCGGCGAGCGGGCTGACCACGACGGCCAGC 525
consensus_15710#3 GCCCGCTGCTCAGCGGCGGTG-ACGGCATCGCGGCGAGCA-----------ACAAGCGGC 257
consensus_15710#0 GCGGCGGGGAGGCGTGCAG------CTGTCAG-GC-TGACA-GCAAGGG---CCCACACG 872
consensus_15710#2 GCGTGCGTGGTGCGTGCTGTGCATGCTGTCAGTGCGTGACATGCAATGGTGCCCAGCACG 277
* * * * ** * * *
consensus_15710#1 ACCGCCGCCTTTCCGTCCCTTGCGCCGGCGCCGCCGCCGCAGCAGCACAGGCTACACAAC 585
consensus_15710#3 ACCACCGCCGCCGCATCCCATAT-CCGTCCCGGCGAA----------------------- 293
consensus_15710#0 A-GTTTA----GATATTTCAGG--CCGTTG-GAACAAGGCCA--GTACATATGAGATATG 922
consensus_15710#2 ACGTTTACGATNCNATTTCAGTGCCTGTTGTGAACAAGGCNNCAGTACATCTGAGATATG 337
* * * * *
consensus_15710#1 CCGGTGCACGCCGCGGCGCCGAGCAATGCGAGCTTCGCCAGGTCCGCGGCGTCCCCGCCG 645
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 --ACCATGAGATGTGA-GATGGCTTA-ATTAGCTTC---AATTCCCAA-CATGTGTAACA 974
consensus_15710#2 C-ACCATGAGATGTGACGATGGCTTACATTAGCTTC---AATTCCCANACATGTGTAACA 393
consensus_15710#1 TCGGAGGACGGCCACAGCAGCAGCGGCGGCAGCTCGGACGCGCCGCGGTGCCCCGACCTC 705
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 -CAGGG-AGTTTTTCTA-GTGGACGACAATACTGTTTAATTTCAGAAAAAAAAAGGGAAA 1031
consensus_15710#2 -CAGGGGAGTTTTTCTACGTGGACGACAATACTGTTTAATTTCAGAAAAAAAAAGGGAAA 452
consensus_15710#1 AACCTCGACCTCGACCTCGACCTGTCCATGAGCCTGCCGAGCTCGCCGCCCAAGACGCCG 765
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GAAAAAGGTTCTAATCTGTTCATATTTCTTACTATTATCCAATCTTCATGATCTCAATCT 1091
consensus_15710#2 GAAAAAGGTTCTAATCTG------------------------------------------ 470
consensus_15710#1 GCCGCCGCGTCGTCCACGACCGCGTCGCGCCACCATCACCACCAGCAGCAGAAGACCATC 825
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 CTCTCTCTCTTTATTATTTTTCTTTGTAGTAATTAACTTCATGTTGGTTCCTCTAAAAAA 1151
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 TGCCTCTGCTACCACCTCGGCGTCCGCAACGGCGACGTCTGCAGCTGCAAGGCGGCCGCG 885
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 GATTGGTCGATGTTATTCAGTGATAA---------------------------------- 1177
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 CCATCGCCGGCCGGCCCACGCGCGTTCCGGTTTCTCAGGCCACTGGAGGAGGGCCAGTAC 945
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 ------------------------------------------------------------
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 ATATAGCACAGCAGGCTTTAGGGAAAAAAAACCTGTAAAAAACACAAAAAAAAACGGTGG 1005
consensus_15710#3 ------------------------------------------------------------
consensus_15710#0 ------------------------------------------------------------
consensus_15710#2 ------------------------------------------------------------
consensus_15710#1 GCAATAGAGTTTTTTCTAAGTTCTAAAAAAAA 1037
consensus_15710#3 --------------------------------
consensus_15710#0 --------------------------------
consensus_15710#2 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||