These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1826 fasta sequence [CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCTGCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAATGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCGCCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACCGAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAGGGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATTGCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGACATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGATATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAAAACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGGACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAAAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC-GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA-AG-CATTGGGAGCACTCCCCC-TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAAAAAAAAGTATTTTCCTGTTTTACTAAAAAAAA] [+] EMBL AK072032 [CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCTGCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAATGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCGCCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACCGAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAGGGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATTGCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGACATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGATATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAAAACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGGACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAAAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCG ] [+] EMBL CK085304 [ TTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCG AAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGC ] [+] EMBL AK103963 [ CCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGC ] [+] EMBL CF292168 [ AAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCG TCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTNTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTAT ] [+] EMBL CA763275 [ CACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAAaaaaaaaaa ] [+] EMBL AK121368 [ GAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTT ] [+] EMBL CB685892 [ ggcacatGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATC ] [+] EMBL C29181 [ AGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGNCGATGCCCAGGCGAAG AGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCG GANAGATTTTGGGAGCACTTCCCC TGTACCANAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTTTAATTTTTTTGATGTATGAA ] [+] EMBL AU223251 [ CGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACAGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTC ] [+] EMBL AU077553 [ GCTTCTGGAAGGNTCTNGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGNCTCCACATGAAC GCCGTCGCCTTCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTNGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTTCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTG ] [+] EMBL AU162374 [ TCTGGAAGGTTCTCGAAGATGCTGTCCNCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC ACCGTCGCCTCCCGCCTCCGCAAATACNGGCTCCGGTACGACGACCTGTACGACNCCNACCACGACCTCGACATCAAGGAGGCCCNGGCGCGGCTGCCGCGGGAGGNGGTGGACGCCCGCAACCAGCGCNTCAAGCG ] [+] EMBL AU161460 [ TGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGC ] [+] EMBL CB664173 [ CGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC ] [+] EMBL AU223252 [ TCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAAaaaa ] [-] EMBL CF292167 [ ACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCG TCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCCTTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCTTAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAA ] [-] EMBL CF335528 [ AAGCAGACACCGTTCAGAGGCTATTTATTTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTTTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCCCCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAAAAAAAA ] [-] EMBL CF296589 [ CAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCACAGACCCTCTGAGCCGTATTTTCCTGTTTTACTAAAAAAAA] [+] EMBL AU031590 [ G CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCNGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTNGGTAAGAAAGTTTTCATTGTCGNACAAAAAA ] consensusID : consensus_15719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence [AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGCGAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCG-GCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC-TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA] [+] EMBL AU161461 [AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGCGAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCG GCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA] [+] EMBL AU077554 [ GAGGCCCTGGCGCGNGCTGCCGCGGNAGGTGGTGAACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAAAAAaaaaa ] [+] EMBL BI797838 [ CGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACT CCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGT TTATG GTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTTGGTATGACAACTGACATATGGTGTATGTTTGGTAACCAA TTAAAACTCTATATAGCTTCAaaaa ] consensusID : consensus_15719#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence [ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC] [+] EMBL CF296588 [ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC] [+] EMBL CF335527 [ CCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTAC ] consensusID : consensus_15719#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [GCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA] [+] EMBL AU182192 [GCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCT 60 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAA 120 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCG 180 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 CCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACC 240 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAG 300 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATT 360 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGAC 420 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 ATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGA 480 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAA 540 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 AACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGG 600 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 ACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGAT 660 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAG 720 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGC 780 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGC 840 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAA 900 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 AAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCC 960 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 GGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACC 1020 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 ------------------------------------------------------------ consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 CAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCG 1080 consensus_15719#2 -------ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCG 53 consensus_15719#1 ------------------------AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGC 36 consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 CCACATCGGAGAAGAGAGAGAGAGAGAGAGAG--CGTGGAAGCT--TCTGGAAGGTTCTC 1136 consensus_15719#2 CCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCT--TCTGGAAGGTTCTC 111 consensus_15719#1 GAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCC 96 consensus_15719#3 -----------------------------------------GCGGCGGAACCCGCTGGCC 19 consensus_15719#0 GAAGA-TGCT-GTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCC 1194 consensus_15719#2 GAAGA-TGCT-GTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCC 169 ***************** consensus_15719#1 CGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGAC 156 consensus_15719#3 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 79 consensus_15719#0 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 1254 consensus_15719#2 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 229 *********************** ****** ***************************** consensus_15719#1 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 216 consensus_15719#3 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 139 consensus_15719#0 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 1314 consensus_15719#2 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 289 ************************************************************ consensus_15719#1 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 276 consensus_15719#3 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 199 consensus_15719#0 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 1374 consensus_15719#2 GTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 349 ********************* ************************************** consensus_15719#1 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 336 consensus_15719#3 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 259 consensus_15719#0 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 1434 consensus_15719#2 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 409 ************************************************************ consensus_15719#1 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 396 consensus_15719#3 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 319 consensus_15719#0 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 1494 consensus_15719#2 CTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 469 ********************* ************************************** consensus_15719#1 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 456 consensus_15719#3 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 379 consensus_15719#0 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 1554 consensus_15719#2 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 529 ************************************************************ consensus_15719#1 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 516 consensus_15719#3 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA--------- 430 consensus_15719#0 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 1614 consensus_15719#2 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 589 ************************************* *** * * consensus_15719#1 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 576 consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 1674 consensus_15719#2 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 649 consensus_15719#1 TAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACT 636 consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 TAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACT 1734 consensus_15719#2 TAGATACCTTTTGGTATGAC---------------------------------------- 669 consensus_15719#1 CTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA--- 693 consensus_15719#3 ------------------------------------------------------------ consensus_15719#0 CTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAA 1794 consensus_15719#2 ------------------------------------------------------------ consensus_15719#1 -------------------------------- consensus_15719#3 -------------------------------- consensus_15719#0 AAAAAAGTATTTTCCTGTTTTACTAAAAAAAA 1826 consensus_15719#2 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||