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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1122 fasta sequence
[TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT-CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC--TGTGTTTTTGTTTAGTAGCCTGTGA-GAGACGGAAGAGCCTTGTAAATAG-TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGACGTTTTTAAAAAAAAAAAA]
[+] EMBL CF308831 [TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCCTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGA CCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCGGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTGCAGCAACGCATCCTT ]
[+] EMBL AK069262 [ CACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAGCTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTAT ]
[+] EMBL CF311084 [ caCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCC ]
[+] EMBL AK061380 [ CCCAAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTC ]
[+] EMBL AB036883 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGA ]
[+] EMBL AB037183 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGA ]
[+] EMBL AU181580 [ CCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGC ]
[+] EMBL AU222696 [ CCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCCGACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGGCGTTCGCTTT CCTTTCAGAGGATATCCCGTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAG ]
[+] EMBL AU083351 [ TTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGAACCGGCGTTCGCTTTCCCTTTCAGAGGATATCCCCTTGCACGTCCAGCAACGCATCCTTACTTTTTCTATGAGCAGGCTGCAGCGGTTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGACGTTTTTAAAAAAAAAAAA]
[+] EMBL C72212 [ TTTCTATGAGCAGGCTGCAGCGGCTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAG TTTCGATCTGGATCTGAACCGGCCGCCGNCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGAGGAGACGGAAGAGCCTTGTAAATAGTTTTTTCTGCCGAG ]
[+] EMBL AU165445 [ TTCTATGAGCAGGCTGCAGCGGNTGCCGCAGCTGAGGCTGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCAAAAAAA ]
[+] EMBL AU222695 [ TGGATACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCCCAAAAAaaaaaaa ]
[+] EMBL AU181581 [ ACCGTATGATGAAGCTTGCACCGCCGGTCACCGTGGCGGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTC TGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCAAAAA ]
[-] EMBL CF308830 [ GTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATTTTGGGCCGTCACCTCCAACGGTTACGGGGAACAAGGCGGCAGCTTTCGATTTGGATTTGAACCGGCCCCCCCCGGTAAAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGGAGTTTCTCTCTTATTTTTTTCTTTGAAGGAAATTTCTCTCCGAAGTTTTGGTCCTC TGGGTTTTCGTTTAGTAGCCTGTGA AAAACGGAAAAGCCTTGTAAATAG TTTTTTTGCCGAGGGCGAAATTCATTTTGGGATTTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGGGGATGTATTCCTTTATATTAGTATGAAGAAA ]
[+] EMBL CA767024 [ TCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTCTTCTTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTAGTAGCCTGTGA GAGACGGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATCCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAACCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGA ]
[-] EMBL CF311085 [ GGAAGAGCCTTGTAAATAG TTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAACCCGTGGAGTGTATGTATTCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCA ]
consensusID : consensus_15758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 794 fasta sequence
[NCNANAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTCCACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATATCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGCACCGGTGCCGACTTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGCACAAGGCTCAACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTACCGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCCCGGTGTAACCTGAAAGAAACT]
[+] EMBL C97758 [NCNANAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGNGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCNTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGG ]
[+] EMBL AW155552 [ caAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGGCGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTCCACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATATCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGCACCGGTGCCGACTTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGCACAAGGCTCAACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTACCGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCCCGGTGTAACCTGAAAGAAACT]
[+] EMBL C26399 [ ACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAGGAGGCCGCCCGCGCCTACGACGCCGNCGNTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATNACAGTCGATGGTCGGCTGTGGNGGAA CCCAG ]
[+] EMBL OSC24941 [ CTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACANGGCAGAGGAGGCCGCCCGCGCC ]
[+] EMBL OSC24741 [ CTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGNGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACCCACCGNGCTTNGTCTTGGNGTCGGCGGAGGTNTCGGAGCCGNGGGTCCTCACTACAGGNGNGTCCGNAAGn ]
consensusID : consensus_15758#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAACAAACTTCCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAGCCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCCGGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGGCGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGCCCGTCCAGCAACGCATCCATACTTTTTTTATGAGCAGGCTGCAGCGGCTTCCGCAGGTGAGGCTGGGTTCCGTTTGATGAAGCTTGCCCCCCCGGTTTCCGTGGCGGCGGTTGCCCAAAGTGGCTCCGGCTCCTTGTCGGTGGTTGGTTTTGGGCCGTCCCCTTCAGCGGTTTCGGGGAACAAGGCGGCAGCTTTTGATTTGGGTTTGAACCGGCCGCCCCCGGTTGAGAACTAGCTCCGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTTTTCTTTGATGGGTTTTTTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA]
[-] EMBL CA759952 [GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAACAAACTTCCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAGCCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCCGGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGGCGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGCCCGTCCAGCAACGCATCCATACTTTTTTTATGAGCAGGCTGCAGCGGCTTCCGCAGGTGAGGCTGGGTTCCGTTTGATGAAGCTTGCCCCCCCGGTTTCCGTGGCGGCGGTTGCCCAAAGTGGCTCCGGCTCCTTGTCGGTGGTTGGTTTTGGGCCGTCCCCTTCAGCGGTTTCGGGGAACAAGGCGGCAGCTTTTGATTTGGGTTTGAACCGGCCGCCCCCGGTTGAGAACTAGCTCCGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTTATTTTTTTCTTTGATGGGTTTTTTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAAAAAAAAAAAAAAAAA]
consensusID : consensus_15758#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 607 fasta sequence
[ATTNGGACTTGGATGTGTTCCCCCCGGCTGTGTGCTCCATNCCCGCCCGGCGTTCGCTTCCTTTCCAGAGGATNTCCCTTGCACGTCCAGCACGCATCCTTACNTTGTNTCTATGACAGGCTGCATGCGGCT-CC-CATCTGAGGCTGGATCACCGTATGATGGAAGCTNGCCCCGCCGGTCACACCGTGGCGGGCGGTTGCAC-AAGTGACTCCGACTCCTCGTCGGGGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAA-GCGGCAGCTTTCGATCTGGATCTGAACC-GCCNCC-CCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGACCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANCAGATCATGCCGGCGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACCCAAAAAAAAAAAAAAAAA]
[+] EMBL BI806251 [ATTNGGACTTGGATGTGTTCCCCCCGGCTGTGTGCTCCATNCCCGCCCGGCGTTCGCTTCCTTTCCAGAGGATNTCCCTTGCACGTCCAGCACGCATCCTTACNTTGTNTCTATGACAGGCTGCATGCGGCT CC CATCTGAGGCTGGATCACCGTATGATGGAAGCTNGCCCCGCCGGTCACACCGTGGCGGGCGGTTGCAC AAGTGACTCCGACTCCTCGTCGGGGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCGAACAA GCGGCAGCTTTCGATCTGGATCTGAACC GCCNCC CCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGACCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANCAGATCATGCCGGCGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACCCAAA ]
[+] EMBL AU058041 [ GGCTGCA GCGGCTGCCGCAGCTGAGGCTGGAT ACCGTATGAT GAAGCTTGCACCGCCGGT CACCGTGGC GGCGGTTGCACAAAGTGACTCCGACTCCTCGTCGGTGGTTGATCTCGCGCCGTCACCTCCAGCGGTTACGGCNAACAAGGCGGCAGCTTTCGATCTGGATCTGAACCGGCCGCCGCCGGTAGAGAACTAGCTCAGGATGGGTTAGCTGACGACTTTGTAGTTTCTCTCT TATTTTCTTCT TTGATGGATATTTCTCTCCGATGTTTTGGTCCTCTGTGTTTTTGTTTAGTAGCCTGTGAGAGACGGAAGAGCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAACAGATCATGCCGGCGATGAGATGGACTAAA CCGTGGAGT GTATGTATT CCTTTATATTAGTATGAAGAAATTATTCAGAAAGTCACAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 TGAAGGAGTAGAAAGCCCACACACCCAAACCCAACCTCCCAAAACACCCACCCGGTTTAC 60
consensus_15758#1 ------------------------------------------------------------
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 CAGAGATCCGCGCCCGCCACTTGTAAACCTGCTGCACCCATGGCGCCCAGAGCAGCTACG 120
consensus_15758#1 ------------------------------------------------------------
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 GTGGAGAAGGTTGCTGTGGCGCCACCCACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTC 180
consensus_15758#1 ------------------------------------------------------------
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 GGAGCCGGGGGTCCTCACTACAGGGGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCG 240
consensus_15758#1 ------------------------------------------------------------
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 GAGATCCGTGACCCTGCCAAGAAGAGCCGGGTGTGGCTCGGTACCTACGACACGGCAGAG 300
consensus_15758#1 ------------------------------------------------------------
consensus_15758#2 ---GCCGCCCGGGCTCTACGGCGCCCCCGCTTGAGAGTTCCGGGGTGCCCAGGGAAAAAC 57
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 GAGGCCGCCCGCGC-CTACGACGCCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAAC 359
consensus_15758#1 --------------------------------------------------------NCNA 4
consensus_15758#2 AAACTT-CCGTTTGCATCCCAATCGTTGGTTGGGTGTGGCGGCAGCCCCACCACCAATAG 116
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 AAACTTTCCGTTTGCATCACAGTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAG 419
consensus_15758#1 NAACCCAACCTCCCAAAACACCCACCCGGTTTACCAGAGATCCGCGCCCGCCACTTGTAA 64
consensus_15758#2 CCCGGTAGACCCCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGGCATGCCTCTGCCGCC 176
consensus_15758#3 ------------------------------------------------------------
consensus_15758#0 CACGGTAGACACCGGTGGCGGCGGGGTTCAGACGCCTATGCGGGCCATGCCTCTGCCGCC 479
consensus_15758#1 ACCTGCTGCACCCATGGCGCCCAGAGCAGCTACGGTGGAGAAGGTTGCTGTGGCGCCACC 124
consensus_15758#2 GGCTTTGGGCTTGGGTTTGTTCCTCCGCGCGGCTTCTGTTTCTGCAGTTGCCGGGCCCGG 236
consensus_15758#3 --ATTNGGACTTGGATGTGTTCCCCC---CGGCT---GTGTGCTCCATNCCCG--CCCGG 50
consensus_15758#0 GACTCTGGACTTGGATTTGTTCCACCGCGCGGCTGCTGTGACTGCAGTCGCCGGCACCGG 539
consensus_15758#1 --CACCGGGCTTGGTCTTGGCGTCGGCGGAGGTGTCGGAGCCGGGGGTCCTCACTACAGG 182
** ***** ** ** * * * * **
consensus_15758#2 --CGTTCGCTTTCCTTTCAGGGGGTTTCCCGTTGC--CCGTCCAGCAACGCATCCATACT 292
consensus_15758#3 --CGTTCGCTTCCTTTCCAGAGGATNTCCC-TTGC--ACGTCCAGCA-CGCATCCTTACN 104
consensus_15758#0 --CGTTCGCTTTCCTTTCAGAGGATATCCCGTTGC--ACGTCCAGCAACGCATCCTTACT 595
consensus_15758#1 GGCGTCCGCAAGCGCCCGTGGGGGCGTTACGCAGCGGAGATCCGTGACCCTGCCAAGAAG 242
*** *** * * ** * * ** *** * * * *
consensus_15758#2 TTTTTTATGAG-CAGGCTGCA-GCGGCTTCCGCAGGTGAGGCTGGGTT-CCGTTTGATG- 348
consensus_15758#3 TTGTNTCTATGACAGGCTGCATGCGGCTCCCATC--TGAGGCTGGATCACCGTATGATGG 162
consensus_15758#0 TTTTCTATGAG-CAGGCTGCA-GCGGCTGCCGCAGCTGAGGCTGGATA-CCGTATGATG- 651
consensus_15758#1 AGCCGGGTGTGGCTCGGTACCTACGAC-ACGGCAGAGGAGGCCGCCCGCGCCTACGACG- 300
* * * * * * ** * * ***** * * * ** *
consensus_15758#2 AAGCTTGCCCCCCCGGTTTC--CGTGGCGG--CGGTTGCCCAAAGTGGCTCCGGCTCCTT 404
consensus_15758#3 AAGCTNGCCCCGCCGGTCACACCGTGGCGGG-CGGTTGCACAA-GTGACTCCGACTCCTC 220
consensus_15758#0 AAGCTTGCACCGCCGGTCAC--CGTGGCGG--CGGTTGCACAAAGTGACTCCGACTCCTC 707
consensus_15758#1 --CCGCCGCTCGAGAGTTCCGGGGTGCCAAGGCAAAAACAAACTTTCCGTTTGCATCACA 358
* * ** * *** * * * * * * * **
consensus_15758#2 GTCGGTGGTTGGTT-TTGGGCCGTCCCCTTCAGCGGT--TTCGGGGAACAA----GGCGG 457
consensus_15758#3 GTCGGGGGTTGATC-TCGCGCCGTCACCTCCAGCGGT--TACGGCGAACAA----G-CGG 272
consensus_15758#0 GTCGGTGGTTGATC-TCGCGCCGTCACCTCCAGCGGT--TACGGCGAACAA----GGCGG 760
consensus_15758#1 GTCGATGGTCGGCTGTGGCGGCAGCCCCAGCAGCAATAGCACGGTAGACACCGGTGGCGG 418
**** *** * * * * * * ** **** * *** *** * ***
consensus_15758#2 CAGCTTTTGATTTGGGTTTGAACCGG----CCGCCCCCGGTTGAGAACTAGCTCCGG--- 510
consensus_15758#3 CAGCTTTCGATCTGGATCTGAACCGC----CN--CCCCGGTAGAGAACTAGCTCAGG--- 323
consensus_15758#0 CAGCTTTCGATCTGGATCTGAACCGG----CCGCCGCCGGTAGAGAACTAGCTCAGG--- 813
consensus_15758#1 CGGGGTCAGACGCCTATGCGGCCCATGCTTCTGCCGCCGACTCTGGACTGGGATTTGTTC 478
* * * ** * * ** * * *** * *** * *
consensus_15758#2 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTT--ATTTTTTTCT-TTGATGGGTTTT 566
consensus_15758#3 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTNNGATNTTCTTCTGTTGATGGATATT 382
consensus_15758#0 -ATGGGTTAGCTGACGACTTTGTAGTTTCTCTCTT--ATTTTCTTCT-TTGATGGATATT 869
consensus_15758#1 CACCGCGCGGTTGCTGTGACTGCAGTCGCCGCGACCGCGTCCGCTTTCTTTTCAAAGATA 538
* * * ** * ** *** * * * ** *
consensus_15758#2 TTTTTCCGATGTTTTGGTCCTCTTTGTGTTTTTGTTTTGTAGCCTGTGAGAGGCGGGAAA 626
consensus_15758#3 TCTCTCCGATGTTTTGGTCCTCT--GTGNTTTTGTTTAGTAGCCTGTGAGAGACGGAAGA 440
consensus_15758#0 TCTCTCCGATGTTTTGGTCCTCT--GTGTTTTTGTTTAGTAGCCTGTGAGAGACGGAAGA 927
consensus_15758#1 TCCGGTGGACGTCCAGCACNCATTCTTACTTTTCTATAACAGGCTGC-ACCGGTGCCGAC 597
* ** ** * * * * **** * * ** *** * * *
consensus_15758#2 AAAAAAAAAAAAAA------AAAAAAAAAAAAAAAAAACCAAAAA------AAAAAAAAA 674
consensus_15758#3 CCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGANC 500
consensus_15758#0 GCCTTGTAAATAGTTTTTCTGCCGAGGGCGAAATTCATCTTGGGATCTGTTAATTAGAAC 987
consensus_15758#1 TTAGGTTGAATCCTTTATGAACTGGACGCCGTCACCGTGCGCGGTGC----ACAAGGCTC 653
** *
consensus_15758#2 AAA--------------------------------------------------------- 677
consensus_15758#3 AGATCATGCCGG-CGATGAGATGGACTAAACCCNTGGAGTGGTATGTATTCCCTTTATAT 559
consensus_15758#0 AGATCATGCCGG-CGATGAGATGGACTAAACC-GTGGAGTG-TATGTATTCC-TTTATAT 1043
consensus_15758#1 AACTCCTCTGGGGTGATCCCGCGTACTTCACGTTCGGAACAGGGGAATTTAATGGATTAC 713
*
consensus_15758#2 ------------------------------------------------------------
consensus_15758#3 TAGTATGAAGAAATTATTCAGAAAGTCACCCAAAAAAAAAAAAAAAAA------------ 607
consensus_15758#0 TAGTATGAAGAAATTATTCAGAAAGTCACAAAAATATCTGTGCACACTGAGTTTGATTGA 1103
consensus_15758#1 CGCCGCCGGAAAACTACAGGGTACGACATTGTTCTTTATCTTTGGGAATTTCCAGGNGCC 773
consensus_15758#2 ---------------------
consensus_15758#3 ---------------------
consensus_15758#0 CGTTTTTAAAAAAAAAAAA-- 1122
consensus_15758#1 CGGTGTAACCTGAAAGAAACT 794
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||