These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 799 fasta sequence [CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCA-TGGCGGCGGCGCCG--GCGCTGNCGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK100915 [CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCA CGGCGGCGGCGCCG GCGCCGCCGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAGTGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAA ] [+] EMBL CB685260 [ AGCGCGTATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCCCGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCT ] [+] EMBL CB680237 [ AGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCg ac ] [+] EMBL AU183644 [ GCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CNNANGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGNCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGG CACGCAAAGCTCGAGTNCCCTCTCTTCAAGACCACCGNCCCCGACATCAAGTNCATGCAGATCCACCACGAGGCGCGCCACCCCAAG TTCCCTTCGAGCCCGACAAG TTAACAACCTTCA TGGCGGCGcg ] [+] EMBL AU101043 [ GCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGC GCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CATAGGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAGAGCTCGAGTACCCTCTCTGCAAGACCACCAACCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCNAAGCTCCCGTTTGAGCCCGACAAG ] [+] EMBL AU172683 [ CGGCGGCGGCGGCGAGAGCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCnc ng ] [+] EMBL OSC26831 [ GCGGAGAGAGACAGGAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAA CNNANGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGCTCGAGTNCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTNCCCTTNGAGCCCNACAAGNTCAACAANCTTCA Ttg ] [+] EMBL CF325474 [ GAGATGACGGGGAAGGCGAAGCCGAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCTCGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAG ] [+] EMBL OS1321616 [ CACACGGCGAAGGAGATCGAGGCGAAGATCGACGCGGCGACGACGAACAGGGGCGGCGGGAAGGCCGTGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGNTCGAGTGCCCTCTCTGCAAGACCACCGTCCNCGACATCAAGTCCATGNAGATCCACCACGAGGCGCGCNAACCCAAGNTCCCCTTCGAGCCCG ] [+] EMBL C26865 [ ATCGCGGCGAAGATCGACG GGCGACGACGAACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCAAAGCTCGAGTNCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTNCATTGGCGGCGGCGCCGNNGCGCTtntgtcnc ] [+] EMBL CF292070 [ caaataggGCCGCCGCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAAAAA ] [-] EMBL CB680238 [ GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAG GGAGAAAAAGGTGATGGCTAAATCCG ] [+] EMBL AU223456 [ AGGCCGCCGCCTCCTCCTTCAAGCCCAAGCCCGGCGTCCCCGGCANCCTCAANAAGTAACCGCAATCGAATCCATCATCACCCGAATTTGCTACTAATNCCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATNATGTGCCGTGTNATAAATGCGTTNATTNGCGCACATATACATATGTGACCGTGTTCCGTCGCGTNTTNGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTNTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCCCTGCTCAAACAATTGCTAAATNTNAGTAAANAAAAAGGTNATGGCTAAATCCGTTTGCTCNAAAAAAAAAAAAAAAAAA] [+] EMBL BI798726 [ cccGCA CCTCAAGAAGT ACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCC CCGCTCGCTCCGGTGTG CTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTCAAAAAA ] [+] EMBL AU165284 [ CCATCATCACCCGAATCTGCTACTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA ] consensusID : consensus_15760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 577 fasta sequence [CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG-GGCGGCGCCGGCGCCGCCGCCNCCNCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT-ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA--AAAAAAAAAAAAAAAAATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA] [+] EMBL AU101042 [CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG GGCGGCGCCGGCGCCGCCGCCNCCNCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAN AAAAAAAAAAANAAAA ] [+] EMBL BE040124 [ ccACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCCGGCGCCGCCG CCGGCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTG CTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA AAAAAAAAACTTAATCATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA] [+] EMBL AU166775 [ ccCCCCCGGTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATANATGCGTTGATTCGCGCACATANACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA AAAAAAAAAAAAAA ] [+] EMBL AU093604 [ CCGCCTCCTCCTCNAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCNAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACT ACCGCCCGCCGCCGCTCGCTCCGGTGTGCTTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGCTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCAAAAAAAAAAAAAAAAA ] [+] EMBL AU029397 [ CCCGAATCNGCTACTACTAACCGCCCGCCGCCGTTCGCTCCGGTGTGCTTACTTGNTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTNGTCGGNATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCACTGNTCAAACAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAA AAAAAAAAAANAAAA ] consensusID : consensus_15760#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [AACCCGGCCAGAAGACCGCTGGCACAGAACAAGGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACATCAAGCTCCACTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCCCGCTCGCTCCGGTGTGCTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCATGGATGATAATGTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA] [+] EMBL BI800288 [AACCCGGCCAGAAGACCGCTGGCACAGAACAAGGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACATCAAGCTCCACTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGCCCGCCCCGCTCGCTCCGGTGTGCTTGCTGCTGCTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTCCGTGTGATAGATCCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCATGGATGATAATGTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGCTAAATCCGTTTGCTCAAAAAAA] consensusID : consensus_15760#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [ACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCTCGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCGGCGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCTCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAATCTGCTACTACTANCGNCTGCCGGCGNTCGTTNCGGTGTGCTTANTTGCTGCTGCTTGTGTTTTGAATTATTATACTGTGTATGATGTGCCGTGTGATAAATGNGTTGATTGGGGANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGTNAGTTATGNGTAATAGTTATGTGT] [+] EMBL OSC02911 [ACAGGGGCGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCTCGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGCGGCGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCTCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAATCTGCTACTACTANCGNCTGCCGGCGNTCGTTNCGGTGTGCTTANTTGCTGCTGCTTGTGTTTTGAATTATTATACTGTGTATGATGTGCCGTGTGATAAATGNGTTGATTGGGGANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGTNAGTTATGNGTAATAGTTATGTGT] consensusID : consensus_15760#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAATCTGCTATTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGATTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCTCTGCTCAAACAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTTTAAAGGA] [-] EMBL CB685261 [GAGGCCGCCGCCTCCTCCTCCAAGCCCAAGCCCGGCGTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAATCTGCTATTACTACCGCCCGCCGCCGCTCGCTCCGGTGTGATTACTTGCTGCTGCTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATTCGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTATGATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAATGTTTATGTCTGTCTCTGCTCAAACAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGCTAAATCCGTTTGCTCACTTTAAAGGA] consensusID : consensus_15760#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [CTGGGGCAGGACAAGGGCGGCCACGATAGCTCGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCCAAGCCCGGCGTNCGCGGCANCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTTTCTTGTTTTTGAATTATTTACT] [+] EMBL AU093603 [CTGGGGCAGGACAAGGGCGGCCACGATAGCTCGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGAGGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGGCGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCCAAGCCCGGCGTNCGCGGCANCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAATCTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTTTCTTGTTTTTGAATTATTTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15760#1 ------------------------------------------------------------ consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 ------------------------------------------------------------ consensus_15760#0 CAAATAGGGTTAGCGAGAATCGGCGGCGGCGGCGGCGGCGGCGAGAGCGGAGAGAGACAG 60 consensus_15760#3 ------------------------------------------------------------ consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 ------------------------------------------------------------ consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 ------------------------------------------------------------ consensus_15760#0 GAGGGGGCAACCGCGGCGGCGGCGGCGGGGGGGCGCGGAGATGACGGGGAAGGCGAAGCC 120 consensus_15760#3 ------------------------------------------------------------ consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 ------------------------------------------------------------ consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 ------------------------------------------------------------ consensus_15760#0 GAAGAAGCACACGGCGAAGGAGATCGCGGCGAAGATCGACGCGGCGACGACGAACAGGGG 180 consensus_15760#3 -----------------------------------------------------ACAGGGG 7 consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 ------------------------------------------------------------ consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 ------------------------------------------------------------ consensus_15760#0 CGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCCAAGCT 240 consensus_15760#3 CGGCGGGAAGGCCGGGCAGAAGGACCGGCTGGGGCAGGACAAGGGCGGCCACGCANAGCT 67 consensus_15760#5 ----------------------------CTGGGGCAGGACAAGGGCGGCCACG-ATAGCT 31 consensus_15760#1 -------CCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGA 53 consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 ----------------------------AACCCGGCCAGAAGACCGCTGGCACAGAACAA 32 consensus_15760#0 CGAGTGCCCTCTCTGCAAGACCACCGCCCCCGACATCAAGTCCATGCAGATCCACCACGA 300 consensus_15760#3 CGAGTGCCCTCTCTGCAAGACCACCNNCCCCGACATCAAGTCCATGCAGATCCACCACGA 127 consensus_15760#5 CGAGTGCCCTCTCTGCAAGACCACCGNCCCCGACATCAAGTCCATGCAGATCCACCACGA 91 consensus_15760#1 GGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTNAACAACCTCCCCAG-GGCGG 112 consensus_15760#4 ------------------------------------------------------------ consensus_15760#2 GGCCGCCCACCCCAAGCTCAGAGTGCCCCCTCTGCAAGACCCCCGCCCCCGACA-TCAAG 91 consensus_15760#0 GGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCATGGCGGCGG 360 consensus_15760#3 GGCGCGCCACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGG 187 consensus_15760#5 GGCGCGCNACCCCAAGCTCCCCTTCGAGCCCGACAAGCTCAACAACCTCCACGGCGGCGG 151 consensus_15760#1 CGCCG--GCGCCGCCGCCNCCNCCGGTGAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 166 consensus_15760#4 ---------------------------GAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 29 consensus_15760#2 CTCCA--CTGCAGATCCACCACGAGGCGCCCCACCCCAAGCTCCCCTTCGAGCCCGACAA 149 consensus_15760#0 CGCCG--GCGCTGNCGCCGCCGCCGGTGAGGC-CGCCGCCTCCTCCTCCAAGCCC---AA 414 consensus_15760#3 CGCGG-----CGCGGCCNCTGTNCGGNTGAGGCCGCCGCCTCCTCCTCCAAGCCC---AA 239 consensus_15760#5 CGNNGACGCGCNTCGTCTCGNNTTTGTAGTGCCTGCCGGCTCCTCCTCCAAGCCC---AA 208 ** * *** * ***** ** consensus_15760#1 GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 225 consensus_15760#4 GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCCCCCGAAT 88 consensus_15760#2 GCCCGGCAGTCCGCGCCACCCTCAAGAAGTAACCCCAATCGAATCCATCATCACCCGAAT 209 consensus_15760#0 GCCCGGC-GTCCGCGGCAGCCTCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 473 consensus_15760#3 GCCCGGC-GTCCGCGGCAGC-TCAAGAAGTAACCGNAATCGAATCCATCATCANCCGAAT 297 consensus_15760#5 GCCCGGC-GTNCGCGGCANC-TCAAGAAGTAACCGCAATCGAATCCATCATCACCCGAAT 266 ******* ** **** ** * ************* **************** ****** consensus_15760#1 CTGCTACTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGCTT------ACTTGCTGCTG 278 consensus_15760#4 CTGCTATTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGATT------ACTTGCTGCTG 141 consensus_15760#2 CTGCTACTACTACCGCCCGC-C-CCGCTCGCTCCGGTGTG----------CTTGCTGCTG 257 consensus_15760#0 CTGCTACTACTACCGCCCGC-CGCCGCTCGCTCCGGTGTGCTT------ACTTGCTGCTG 526 consensus_15760#3 CTGCTACTACTANCGNCTGCCGGC-GNTCGTTNCGGTGTGCTT------ANTTGCTGCTG 350 consensus_15760#5 CTGCTACTACTACCGTCCGTANGCCGCTCGNTCCGGTGTGCTTTACTTTGCTTGCTGCTT 326 ****** ***** ** * * * * *** * ******* ******** consensus_15760#1 CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATT 338 consensus_15760#4 CTTGCTGTTTTGAATTATTACTCCTGTGTCATGATGTCCCGTGTGATAGATGCGTTGATT 201 consensus_15760#2 CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGT-CCGTGTGATAGATCCGTTGATT 316 consensus_15760#0 CTTGCTGTTTTGAATTATTACTACTGTGTCATGATGTGCCGTGTGATAGATGCGTTGATT 586 consensus_15760#3 CTTGTG-TTTTGAATTATTA-TACTGTGT-ATGATGTGCCGTGTGATAAATGNGTTGATT 407 consensus_15760#5 TCTTGT-TTTTGAATTATT--TACT----------------------------------- 348 * ************ * ** consensus_15760#1 CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 398 consensus_15760#4 CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 261 consensus_15760#2 CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCG-CATGTTTTAGCTAT 375 consensus_15760#0 CGCGCACATATACATATGTGACCGTGTTCCGTCGCGTCTTCGTCGGCATGTTTTAGCTAT 646 consensus_15760#3 GGGG-ANATATANATATGTGAACGTGTTTCGTGGGNTTTTGTGGATGTTTAGTATGATGT 466 consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 GATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAAT 458 consensus_15760#4 GATGTTTAGTTTATGTGTCATTACTGTATGATGCTGTCAATGGTGTCAATGGATGATAAT 321 consensus_15760#2 GATGTTTAGTTTATGTGTCACTACTCTATGATCCTGTCAATGGTGTCA-TGGATGATAAT 434 consensus_15760#0 GATGTTTAGTTTATGTGTCACTACTCTATGATGCTGTCAATGGTGTCAATGGATGATAAT 706 consensus_15760#3 NAGTTATGNGTAATAGTTATGTGT------------------------------------ 490 consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 GTTTATGTCTGTCACTGCTCAAA-CAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 517 consensus_15760#4 GTTTATGTCTGTCTCTGCTCAAA-CAATTGGTAAATCTGAATAAGGAAAAAGGTGATGGC 380 consensus_15760#2 GTTTATGTCTGTCACTGCTCAAAACCATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 494 consensus_15760#0 GTTTATGTCTGTCACTGCTCAAA-CAATTGCTAAATCTGAGTAAAGAAAAAGGTGATGGC 765 consensus_15760#3 ------------------------------------------------------------ consensus_15760#5 ------------------------------------------------------------ consensus_15760#1 TAAAAAAAAAAAAAAAAAAAATCCCATACTTCTACTATCACAACCTCTTCTTATCCTATA 577 consensus_15760#4 TAAA------------------TCCGTTTGCTCACTTTAAAGGA---------------- 406 consensus_15760#2 TAAA------------------TCCGTTTGCTCAAAAAAA-------------------- 516 consensus_15760#0 TAAA------------------TCCGTTTGCTCAAAAAAAAAAAAAAAAAAA-------- 799 consensus_15760#3 ------------------------------------------------------------ consensus_15760#5 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||