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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1877 fasta sequence
[TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC-GTATA-CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG-TTTGAGGCGCC-TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA-GGCACTTATTCCACAAA-ATT-TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC-CATGG-CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA-GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC-AAAGTTAGGCAACTT-GACATAGTATGTGACTCCACGTGTGGTTT-GGAATTTGTGCT-CATAA-GGGT-AAGAGC--GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCCATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAACCCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAGCCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAGACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC-CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG-ATC-GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN-CGACTCCGTCNCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTTTTTTTTTAGTTTTCCCT]
[-] EMBL AU091727 [TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCA TGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGNTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTTGGACATAGTATGTGAATCCACGTGTGGTTTGGGAATTTGTGCT CATAAGGGGTAAAGAACCGGGGACAGCGAGTAana ]
[+] EMBL CB657305 [ TGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCA ]
[-] EMBL BM421441 [ tttttTAAAG TGGAGACCCATTGTNGGNCGTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAGCGACATAGATATGCTTCGGTATAGCATACACATGATGGCATA TGATCAATCCCCTAGGGAACTTGATGAATTAGATATCCATNTAAGTNGCTACCG TTTGAGGCGCCGTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGGCACTTATTCCACAAANATTATACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACACATGGACCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGGGCGG GTCTCGTAGGAAAGGCCCCAGGGGGCGA GCTGCA CTCAANCCTAC ]
[-] EMBL AU108636 [ ttttttTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAAGTTAGGCAACTT GACATAGTATGTGACTCCAAGTGTGGTTT GGAATTTGTGCTCCATAA GGGT TAGAGCG GGGANAGCGANTAGACCGGT ]
[+] EMBL CB657530 [ GACCCATTTTTTTCATTGTCAACTATGATGGCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCC ]
[+] EMBL CB643695 [ CCCATTTTTTTCATTGTCCCCTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCTATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCA ]
[+] EMBL CB643693 [ GACATAGATATGGTTT CCATT CCTACTCCTGATAGATTGTAGATCGGTCCCCTATGGAACTTGATGAATTACATATCCATTTAAGAAGATACCGATTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTC ]
[-] EMBL CB657529 [ TGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCCATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAACCCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAGCCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAGACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGC ]
[-] EMBL CB657304 [ GAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGG ]
[-] EMBL CB643692 [ CTCTCAGACCATCGCTCCCGGTGGGTTCCTCTGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGCCGGCGGCGCGGCCTGTGGGGTCGACGAAGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCCGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCGTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGG ]
[-] EMBL C71818 [ tCGNCNGCGGGGCCTGTGGGGACGACGACGANNCGNAGGANGAGGGCGGGTCGTCCTGGTTGAGGAAAGGATCGAGCAGGTGGTCGATGGGGANGGAGGGGTCGAGGCGCTTGGCCTTGGANAGGAACTTGACGGGGCGGGCGCTGTTGCCGGCGTNCGCCGCGGCCTTCCCGATGNGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGn ]
[-] EMBL C72274 [ acaaGGC GGTCGTCCTGGTTNA GAAAGGATCAAACAGTTGGTCCAT GGGAAGGAAGGGTC AAGCCCTTGGCCTTGGANAGGAACTTGACGGCNCGGGC CTGTCGCC GCGTCCGCCGCGGCCTTCCCGATNCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAANAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN CGACTCCGTC ]
[-] EMBL OSR2894A [ CTCNATGGCNCCTCCCACCCGNGCAGCCTCCGCAGATCTGGCCNCGCAACGACNAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGGAATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGANCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGNCAAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACNCGACGACCACCGCGGGCGGANTCGATATTTCCCT ACACTCCNTCNCNCTTTGCTTCACTTTCCTCAATTT ]
[-] EMBL CB643694 [ AGCCCCCGCAGATCTGTCCGCGGGACGGGGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGG ]
[-] EMBL C26665 [ GCGCGACGGCGAGTCACCCNCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGGAATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGNCGTCGGCGGCGG NGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN NGACTCCGTCNCGCTTTGCTTCACT ]
[-] EMBL AU091726 [ GATGGACCCCGATCGG ATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCNACGACTCCGTCTCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTTTTTTTTTAGTTTTCCCT]
consensusID : consensus_15767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 747 fasta sequence
[TTCCTTTTTTTTTTTTAAAGTTGCAGACCCATTTTTTTCATTGCCAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC-AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT-C-TGTGAGAGTATTGA-GAAGTAATCCCGCTCAA-CATGCCGT-TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC]
[+] EMBL CB656523 [ CCTTTTTTTTTTTTAAAGTTGCAGACCCATTTTTTTCATTGCCAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCGCTCAA CATGCCGT TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC]
[-] EMBL C98551 [ttttTTTTTTTTTTTTTTTTTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAAGTGCGGNGTCTCGTAGGAAAGCCCCCAGTGGNGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAA ]
[-] EMBL BI809693 [ ttttttTTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGA TGCATA TGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAA TTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTG ACCTCAA CCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCG TCAA CATGCCGT TCGAGTGTTGCACGCTCAG GCTCTGGTGTGGATACGG CCTC AAGTT ]
[-] EMBL CB964834 [ ATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCGCTCAA CATGCCGT TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATG NACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAA ]
[-] EMBL CB967194 [ CCTCAACCCTACAATTGCNTGTGAGAGTATTGANGAAGTAATCCCGCTCAANCATGCCGTNTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAG ]
consensusID : consensus_15767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence
[NNNNNNTTTTTTTNNNNNNNNGCAGACCCATTTTNNNNATTGTCAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGTTTGGAATTTGTGCTCATAAGGGTNGAGCGCCGCAGCTATTCCCTTTAGTGAGGAAATTTAG]
[-] EMBL CF196732 [NNNNNNTTTTTTTNNNNNNNNGCAGACCCATTTTNNNNATTGTCAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATG ]
[-] EMBL BU673703 [ ATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGTTTGGAATTTGTGCTCATAAGGGTNGAGCGCCGCAGCTATTCCCTTTAGTGAGGAAATTTAG]
consensusID : consensus_15767#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence
[TTTTTTAAATAAATAATGCGTGTATATTGCTACAGAAAAACTATGTGCACAGAAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGNN]
[-] EMBL AU082713 [TTTTTTAAATAAATAATGCGTGTATATTGCTACAGAAAAACTATGTGCACAGAAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15767#0 TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGT 60
consensus_15767#1 ---TTCCTTTTTTTTTTT-------------TAAAGTTGCAGACCCATTTTTTTCATTGC 44
consensus_15767#2 ----NNNNNNTTTTTTTN-------------NNNNNNNGCAGACCCATTTTNNNNATTGT 43
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 CAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 120
consensus_15767#1 CAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 104
consensus_15767#2 CAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 103
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 180
consensus_15767#1 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 164
consensus_15767#2 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 163
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 240
consensus_15767#1 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 224
consensus_15767#2 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 223
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 300
consensus_15767#1 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 284
consensus_15767#2 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 283
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 360
consensus_15767#1 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 344
consensus_15767#2 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 343
consensus_15767#3 -------TTTTTTAAATAAATAATGCGTGTATATTGCTA---CAGAAAAACTATGTGC-A 49
* *** * * * ** * * *** ** * * *
consensus_15767#0 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 420
consensus_15767#1 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 404
consensus_15767#2 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 403
consensus_15767#3 CAG--AAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 107
* ****** * *****************************************
consensus_15767#0 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 480
consensus_15767#1 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 464
consensus_15767#2 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 463
consensus_15767#3 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 167
************************************************************
consensus_15767#0 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 540
consensus_15767#1 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 524
consensus_15767#2 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 523
consensus_15767#3 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 227
************************************************************
consensus_15767#0 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 600
consensus_15767#1 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 584
consensus_15767#2 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 583
consensus_15767#3 GTTGNN------------------------------------------------------ 233
****
consensus_15767#0 TATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAG 660
consensus_15767#1 TATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAG 644
consensus_15767#2 TATGTGACTCCACGTGTG-TTTGGAATTTGTGCTCATAAGGGTN-GAGCGCCGCAGCTAT 641
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGC 720
consensus_15767#1 TAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGC 704
consensus_15767#2 TCCCTTTAGTGAGGAAATT-TAG------------------------------------- 663
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATG 780
consensus_15767#1 TGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC----------------- 747
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 CCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCC 840
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 ATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAAC 900
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 CCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAG 960
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 CCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAG 1020
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 ACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGG 1080
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGG 1140
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 ATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGAC 1200
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTC 1260
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGA 1320
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCG 1380
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTG 1440
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCG 1500
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 ATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCCCCCGCGCAG 1560
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 CCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGAT 1620
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GGACCCCGATCGGATCGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACC 1680
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAG 1740
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 GAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATT 1800
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TCCCNCGACTCCGTCNCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTT 1860
consensus_15767#1 ------------------------------------------------------------
consensus_15767#2 ------------------------------------------------------------
consensus_15767#3 ------------------------------------------------------------
consensus_15767#0 TTTTTTTAGTTTTCCCT 1877
consensus_15767#1 -----------------
consensus_15767#2 -----------------
consensus_15767#3 -----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||