These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCGCCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGGTCCGGAGGAGCGGCGGCGGCGCGCAGGACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTTCTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCTATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAGCTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTGCCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGCTGGGCGGCTTTGTTCCCTCG] [+] EMBL CA757344 [ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCGCCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGGTCCGGAGGAGCGGCGGCGGCGCGCAGGACGGCGGGTGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTTCTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCTATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAGCTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTGCCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGCTGGGCGGCTTTGTTCCCTCG] consensusID : consensus_1579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [TTCTTAAATCACACCACAAAAATTCACAAATCCACAAATACTAGTATTAGTACTAATCACGAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCCGCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAGCTATATTGATGAATAAATGATGCTCCT] [+] EMBL AK105221 [TTCTTAAATCACACCACAAAAATTCACAAATCCACAAATACTAGTATTAGTACTAATCACGAGAGCAAGAGCAAAGCATGGCCCCCGCAGGCGCCGCCGCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAGGGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCCGACTGCGACTCGGACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCGCTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTTCTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTAATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAGCTATATTGATGAATAAATGATGCTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1579#0 ACGCCGCCGCGCTCGCCGTTCCGGAGGAGGAGGAGGAGAGGGGACCCGCCCGCCCGCGCG 60 consensus_1579#1 ------------------TTCTTAAATCACACCACAAAA----ATTCACAAATCCACAAA 38 *** * * * * * * * * ** * consensus_1579#0 CCTCGCTGCTCTGCCTCGTCTTCCGGTGCGACGACGGCGACGAGGCGAACGCGGTGGCGG 120 consensus_1579#1 TACTAGTATTAGTACTAATCA-CGAGAGCAAGAGCAA-AGCATGGCCCCCGCAGGCGCCG 96 * * ** ** * * ** * * * *** *** * ** * consensus_1579#0 TCCGGAGGAGCGGCGGCGGCGCGCAGGACGGC-GGGTGGTGGCCGCGGGCGGCGTGGAAG 179 consensus_1579#1 CC------GCTGCCGCCCTCGCTCCTACCGATTGAATGGTGGCCGCGGGCGGCGTGGAAG 150 * * ** * *** * ** * ************************ consensus_1579#0 GGCGAGGGCGACGAATCCAACTCCGACTCGGACTCGGACTCGGACTCCGACTGCGACTCG 239 consensus_1579#1 GGCGAGGGCGACGAATCCAACTCCGACTCGGACTCG------GACTCCGACTGCGACTCG 204 ************************************ ****************** consensus_1579#0 GACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCG 299 consensus_1579#1 GACTCGGACGACGACGACGACGAGGGAGGCGAGGGCGGCATCGTGGGGTGGTTCTGGTCG 264 ************************************************************ consensus_1579#0 CTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGTGGATGCTT 359 consensus_1579#1 CTGGCGCATCGCTTCTGATGATTTCTGGATGATCCTGGCCGTCCATGGCCGCGGATGCTT 324 *************************************************** ******** consensus_1579#0 CTTGTGATCACGTTATCTTGTTTAAGTAGTCATTATTAGGGGGGTAGATATAGAACTGCT 419 consensus_1579#1 CTTGTGATCACGTTATCTTGTTTAATTAAGCATTATTAGGGGGGTAGATATAGTACTGTA 384 ************************* ** *********************** **** consensus_1579#0 ATTCCTCCTCCATGCACACCATCCCTGTGGGCCCATTGAGTGCGTTTGCAGGCTGTAAAG 479 consensus_1579#1 ATTCCTCCTCCATGCAGATCATCCCAATAGCATCATTGTGTGTGTCTGCAGTCTGTAAAG 444 **************** * ****** * * ***** *** ** ***** ******** consensus_1579#0 CTATATTGACGAGAAAACGATGCTCCTACGCTTTCGCGAATCCATGTTAAGACGGTGTTG 539 consensus_1579#1 CTATATTGATGAATAAATGATGCTCCT--------------------------------- 471 ********* ** *** ********* consensus_1579#0 CCCTTACGCGCCTCTCAGCGCCCCTTGTTGCTTATTTGTATGTTTACTACCCGCCCCCGC 599 consensus_1579#1 ------------------------------------------------------------ consensus_1579#0 TGGGCGGCTTTGTTCCCTCG 619 consensus_1579#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||