These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 948 fasta sequence [GGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAAAGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCTCACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTGCGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTTGTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTTTTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAGGGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGTGAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGCTGGTGATTGTTTTGCCGGGGATGTTG] [+] EMBL BE040008 [GGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAAAGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCTCACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTGCGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTTGTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTTTTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAGGGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGTGAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGCTGGTGATTGTTTTGCCGGGGATGTTG] [+] EMBL C99088 [ CCGGCGAGTGCGGGANGGNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCNCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGA NCCCAGCTGCCTGTNCGCCGTGATNCTNTCNAACACGGCCAGGGTCGCCGGGATCAANCCGGA GTCGCCATCACCATCCCCAAGCGCTGCAACATNGCCGA ] consensusID : consensus_15790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 789 fasta sequence [CTGATCATACACACAAA-TTAAGTTGTGATCAT-CCGAGC-AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC-GGTGGTGGTGGTGGTCGCCGGCGG-CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG-CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC-GATATCAAGACGTACGGATGCC-GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT-GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAAAAAAAAAACTCATTTTTTTCAACTAATGTAATTATCTAGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCGTTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC] [+] EMBL BE040818 [CTGATCATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCCTGTGGGAGCTTANGCTTTGGGTCGGAATAAGCGAGAGTTCTTCATGTTCGGGGCTTTGCCACTTATTTGGACTATGCACGTGGTGGTTGNGAAAAT TGTATCCTGGTG TTCGTCTGAGT AACTGGT AATTTTATAAGAATAT CCAAAGCTTGCTTGCCAAAAATTATTACTCATTTTTTTCAACTAATGTAATTATCTAGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCGTTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC] [+] EMBL OSR22281A [ TCATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGNCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGANGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGT ] [+] EMBL AU165717 [ ATACACACAAATTTAAGTTGTGATCATCCCNAGCAAAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACNCAATAAGGGCGGGCAGGTTGGTGATCCTCGTGCCGGTGCC GGTGGTGGTGGTGGTCGCC GCGGNCGGGGCGNCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCACCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAA ] [+] EMBL AU184330 [ ATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGCTGGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGNAG ] [+] EMBL OSR18852A [ CACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGNTGGCGCTGCGGCTGGCGCCGTGCGTTTCGGCGNCGGACGACCCGCANTCGGCGCCGTCGAGCAGCTGCTGCTCGNCGGTNCACACCATCGGGCANA NCCCAGCTGCCTGTNCGCCGTGATGCTGTCCAACACGGCCA ] [+] EMBL AU183327 [ TGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAG ] [+] EMBL AU064186 [ gGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAG CCCAGCTGCCTNTGCGCC ] [+] EMBL C73730 [ ggGGNGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGNNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTNTCGGCGGCGGACGACCNGCAGTCGGCNCCGTCGAGCAGCTGCTGCTCGGCGGTGCACAACATCGGGCA ] [-] EMBL BI306476 [ GCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCCCCGACCGGGTGGCGCTGCGGCTGGCCCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCT ] [-] EMBL BI306160 [ GCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATAT ] [-] EMBL BU672796 [ GACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATAT ] [+] EMBL AU184331 [ CGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGAAAAAAA ] [+] EMBL AU184299 [ GACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGAAAAAAA ] [+] EMBL AU182519 [ GACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGGATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAA ] [+] EMBL C99089 [ GGATCAAGCCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGNGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGNATATACAAAAGNTTGNTTGACAAAAAAAAAAAaaaaa ] consensusID : consensus_15790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 784 fasta sequence [CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGTTTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGTTGGGAATTTGTGGGGGGGGGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCCCATGTTTTCGCATTTTTAAACCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGCCCAAAAATTTCGGCCAAGGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGACGACCCCGCAGTCGGGCCCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC-TGTCCAACAC-GGCCAGGG-TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAGTGCGTGCGTATATACAAAAAAAAAAAA] [-] EMBL BI306440 [CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGTTTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGTTGGGAATTTGTGGGGGGGGGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCCCATGTTTTCGCATTTTTAAACCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGCCCAAAAATTTCGGCCAAGGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGACGACCCCGCAGTCGGGCCCCGTCGAGCAANTCTTGCTGGCCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATAT ] [+] EMBL BE039995 [ GCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAGTGCGTGCGTATATACAAAAAAAAAAAA] [+] EMBL AU183333 [ cngGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCCCCGTGATGC TGTCCAACACGGGCCAGGG TCGCNGGGATNAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAaaaa ] [+] EMBL AU184419 [ TGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAaaa ] [+] EMBL AU184823 [ CCTGTGNGCCGTGATGCATGTCCAACACGGGCCAGGGNTCGCCGGGATCAAGCCGGNGGTCGCCATCACCATCCCCAAGCGCTNCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTNAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATAaaaa ] [+] EMBL AU070809 [ GGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGNAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGNATAaaaa ] consensusID : consensus_15790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence [CAGCTGCTGCTCGGCGGTGCACACCATCGGGCANAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAGTCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU182670 [CAGCTGCTGCTCGGCGGTGCACACCATCGGGCANAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAGTCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU183328 [ GGCGGTGCACACCATCGGGCAGAGCCCCANCTGCCTGTGCNCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAANCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTNAGGCCTTGAGGGGGACTGTGGCNCTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAANCGANAGTCCTTCATGTTCGGGGCTNTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAANATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15790#2 CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGT 60 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 ------------------------------------------------------------ consensus_15790#0 ------------------------------------------------------------ consensus_15790#2 TTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGT--TGGGAATTTGTGGGGGGG 118 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 -----------CTGATCATACACACAAATTAAGTTGTGATCATCCGAGCAAAAGCAAAGC 49 consensus_15790#0 ------------------------------------------------------------ consensus_15790#2 GGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCC-CATGTTTTCGCATTTTTAAA 177 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 AAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGG 109 consensus_15790#0 ------------------------------------------------------------ consensus_15790#2 CCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGC--CCAAAAATTTCGGCCAA---- 231 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 CGGTGGCGGTGGTGGTGGTGGTCGCCGGCGGCGGGGCGGCGGAGGGCGCCGGCGAGTGCG 169 consensus_15790#0 ----------------------------------GGCGGCGGAGGGCGCCGGCGAGTGCG 26 consensus_15790#2 GGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGA 291 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 GGAGGGCGTCCGCCGACCGGGTGGCGCTGCGG-CTGGCGCCGTGCGTGTCGGCGG-CGGA 227 consensus_15790#0 GGAGGGCGTCCGCCGACCGGGTGGCGCTGCGG-CTGGCGCCGTGCGTGTCGGCGG-CGGA 84 consensus_15790#2 CGACCCCGCAGTCGGGCCCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 351 consensus_15790#3 --------------------------CAGCTGCTGCTCGGCGGTGCACACCATCGGGCAN 34 consensus_15790#1 CGACCC-GCAGTCGG-CGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 285 consensus_15790#0 CGACCC-GCAGTCGG-CGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 142 ********************************* consensus_15790#2 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 411 consensus_15790#3 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 94 consensus_15790#1 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 345 consensus_15790#0 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 202 ************************************************************ consensus_15790#2 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 471 consensus_15790#3 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 154 consensus_15790#1 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 405 consensus_15790#0 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 262 ************************************************************ consensus_15790#2 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 531 consensus_15790#3 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 214 consensus_15790#1 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 465 consensus_15790#0 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 322 ************************************************************ consensus_15790#2 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 591 consensus_15790#3 TCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAG 274 consensus_15790#1 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 525 consensus_15790#0 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 382 ********** ********************************************** ** consensus_15790#2 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 651 consensus_15790#3 TCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 334 consensus_15790#1 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 585 consensus_15790#0 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 442 *********************** ************************************ consensus_15790#2 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 707 consensus_15790#3 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 390 consensus_15790#1 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 641 consensus_15790#0 TGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAA 502 ************** ************ * *** * ** ***** * ** ** consensus_15790#2 TTGCTTGACAAATTAATCCGGGACGTAAATAAATT------GACCA-TGCAATTAAG--T 758 consensus_15790#3 TTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAAA------AAAAA-A------------ 431 consensus_15790#1 TTGCTTGACAAAAAAA---AAAACTCATTTTTTTC------AACTAATGTAATTATC--T 690 consensus_15790#0 AGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCT 562 * ** * * * consensus_15790#2 GCGTGCGTATATACAAAAAAAAAAAA---------------------------------- 784 consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 AGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCG 750 consensus_15790#0 CACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTG 622 consensus_15790#2 ------------------------------------------------------------ consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 TTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC--------------------- 789 consensus_15790#0 CGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTT 682 consensus_15790#2 ------------------------------------------------------------ consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 ------------------------------------------------------------ consensus_15790#0 GTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTT 742 consensus_15790#2 ------------------------------------------------------------ consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 ------------------------------------------------------------ consensus_15790#0 TTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAG 802 consensus_15790#2 ------------------------------------------------------------ consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 ------------------------------------------------------------ consensus_15790#0 GGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGT 862 consensus_15790#2 ------------------------------------------------------------ consensus_15790#3 ------------------------------------------------------------ consensus_15790#1 ------------------------------------------------------------ consensus_15790#0 GAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGC 922 consensus_15790#2 -------------------------- consensus_15790#3 -------------------------- consensus_15790#1 -------------------------- consensus_15790#0 TGGTGATTGTTTTGCCGGGGATGTTG 948 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||