cluster # 1582

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Oryza sativa
cluster # 1582 cluster # 1582 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1582#0 length = 516 sequences # 1

consensus_1582#1 length = 374 sequences # 1

consensusID : consensus_1582#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCGTCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAACAAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGGGCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCACGCGGCGACCAGGGCAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCACGACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAGGCGGGCATCCGGTTCAGGCGTCCTCATCATCCGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGGAGTATGACACATGGGACCATATATTTTTAATAAATAAGGTGCTGATTGGATTGCCCAAAAAAAAAA]

[+] EMBL BI813337             [CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCGTCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAACAAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGGGCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCACGCGGCGACCAGGGCAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCACGACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAGGCGGGCATCCGGTTCAGGCGTCCTCATCATCCGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGGAGTATGACACATGGGACCATATATTTTTAATAAATAAGGTGCTGATTGGATTGCCCAAAAAAAAAA]




>consensus_1582#0
CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCG
TCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAAC
AAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGG
GCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACCA
CGCGGCGACCAGGGCAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCACGACGA
CGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAGGCGGG
CATCCGGTTCAGGCGTCCTCATCATCCGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAG
AGAGAGGAGAGGGAGGAAGATGGGAATAGGAGTATGACACATGGGACCATATATTTTTAA
TAAATAAGGTGCTGATTGGATTGCCCAAAAAAAAAA

consensusID : consensus_1582#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 374
fasta sequence

                              [AACACCGGGCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCCACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCCGCCAGGAGAGATGACCGCCGCNACGACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAGGCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATGAGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGGTTGCCACCGCNGNTNA]

[-] EMBL OSC577               [AACACCGGGCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCCACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCCGCCAGGAGAGATGACCGCCGCNACGACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAGGCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATGAGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGGTTGCCACCGCNGNTNA]




>consensus_1582#1
AACACCGGGCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACC
ATAGACCCACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCCGCCAGGAGAGATGACCG
CCGCNACGACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCT
CTACGAGGCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATC
ATCTGGTCGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGG
AAAGATGAGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGGTT
GCCACCGCNGNTNA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1582#0      CCGCCGCGACATGCTCATCATCGAGAACCAACTGGCCTCTCCTCCTCCTCCAGAAGCTCG 60
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      TCGCCGTCGAGACCACGCAAAGAAGCCCAAGAAATGGGTGACGTCGAGTATGAAGTGAAC 120
consensus_1582#1      ------------------------------------------------------------
                                                                                  

consensus_1582#0      AAGATGGTGCTGAGGTTCATCTCACCGTCGTGCAAGACGCCACCGGCGAAGGAACACCGG 180
consensus_1582#1      ----------------------------------------------------AACACCGG 8
                                                                          ********

consensus_1582#0      GCGCTCCACCCGCTCGACTTGTTCCGCAAGAGCTTGCTTAGCGGCCAGCACCATAGACC- 239
consensus_1582#1      GCGCTCTACCCGCTCGACTTGTTCCGCAAGAGTTTGCTCAGTGGCCAGNACCATAGACCC 68
                      ****** ************************* ***** ** ****** ********** 

consensus_1582#0      ACGCGGCGACCAGGG----CAGAGCGGCGGCGGCCCGCCAGGAGAGACGACCGCCGCCAC 295
consensus_1582#1      ACGCGGTGACCTNGGGGGTCAAGGAGGCGGCCGCC-GCCAGGAGAGATGACCGCCGCNAC 127
                      ****** ****  **    **  * ****** *** *********** ********* **

consensus_1582#0      GACGACGACGACGAGGAGGCCAACGGCGGCATCATCCGGTCAGCGGCGGAGCTCTAAGAG 355
consensus_1582#1      GACGACGACGAGGAGGAGGCCAACGGCGGNATCATCCGGTCGGNGGNGGAGCTCTACGAG 187
                      *********** ***************** *********** * ** ********* ***

consensus_1582#0      GCGGGCATCCGGTTCAGGCGTCCTCATCAT-------------------------CCGGT 390
consensus_1582#1      GCGGGNATCCGGTTCAGGCGTCCTCATCATTTTACGGTTCAGGCGTCCTCATCATCTGGT 247
                      ***** ************************                         * ***

consensus_1582#0      CGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGGAATAGG 450
consensus_1582#1      CGGCGGTGGAGCTCTACGAGGCGAGAGAAGAGAGAGGAGAGGGAGGAAGATGGAAAGATG 307
                      ***************************************************** ** * *

consensus_1582#0      AGTATGACACATGGGACC-ATATATTTTT-AATAAATAAGGTGCTGATTGGATTGCCCAA 508
consensus_1582#1      AGTATGACATGTGGGACCCATATTTTTTTTAATAAATAAGGTGCTGACTGG-TTGCCACC 366
                      *********  ******* **** ***** ***************** *** *****   

consensus_1582#0      AAAAAAAA 516
consensus_1582#1      GCNGNTNA 374
                             *