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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 806 fasta sequence
[GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG-CTTCAAGGTCA-CGG-CCAT-GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA-GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC-GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC-GGCGTCACGCTCTCCTCGCTCGAGG-AGC-TCGGCCTCCT-CTCCAAGGCCGAGGACCTCGGCC-TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG-CCCTCGTCG-CGCTCCAGGCC-GTCC-TCGCCGCCGTCC-TCC-TCG-CCG-CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC-GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL OSS14285A [GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTTGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAG GGTNGAGAAGGCCGGG ]
[+] EMBL AU070475 [ ccgTTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCNGGGATATTCGCGGANGGGAGCGAGGAGGTTGAGGTAGACGTGTTCAAGAAGCTGGAGA ]
[+] EMBL AK071353 [ GCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCC GCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGT ]
[+] EMBL AK099180 [ AAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGT ]
[+] EMBL AU198167 [ AGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCACCGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCC ]
[+] EMBL OSS15764A [ GAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGNGCTGCTGTCCAGNGCGGAGGAGCTC GGCGTCACGGTCTCCTC ]
[+] EMBL OSS14369A [ AGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTNCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCACNGGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGANGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCC ]
[+] EMBL AU070493 [ GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGANCTC GGCGTCACGCTCTNCTCGCTCGAGG AGC ]
[+] EMBL AU070478 [ GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGNTGATGTCCAGGGCGGAGGAGCTC G ]
[+] EMBL OSC8941 [ AAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGNCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACANGTACGANGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGNAGGGGAGCNAGGAGGTGGAGGTGGACGTTTTCAAGAAGCTGGAGATGCGGAAGGTGCTGANCAC GGT ]
[+] EMBL OSS15524A [ AGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCG ]
[+] EMBL C73394 [ GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGNCCGNGCTGCTGTNCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTNCAAGGCCGAGGACCTC GCC TTCTCAGCCTCGTCGAGGCCGCCGCCGCCGNCTTCTCCGACGGCCTNGTCTCCGT TTGGTTCCGTTCCTTGTn ]
[+] EMBL AU057766 [ GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGCTTCGGCCTCCTNCTCCAAGGCCGAGGACCTCGGCCTTCCTCAGCCTCGTCG ]
[+] EMBL OSS15683A [ AAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTTGTTCGGGGCGGGGATATTCGCGGAGGGGAGCTAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGANGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGGTCTTCTCGNTCGAGG AGC ]
[+] EMBL AU163439 [ ccnGCCACCGCCGTTCCCAAGAAGCGGGCGTTTTCAAGGTCA CGGCCCATGGGCTCCCCAGAAGAAGGTGAACAGGTACGACGANAAAGTGGTCGAANCAGTGGTTC GGGCGGGGATATTCGCGGAGGGGA CGAGGAGGTGAAGGTGGACGTGTTCAAGAAGCTGGANAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAA ]
[+] EMBL AU197994 [ AGGCCGGGCTCCTGTCCAGGGCGGAGGAGCTCGGGGGTCACGCTCTCCTCGCTCGAGGAAGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTNCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCTTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaaaa ]
[+] EMBL AU198202 [ C TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTNTTNGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAA ]
[+] EMBL AU096970 [ GACTCCGCCGCCCCTCGTCGCCGCTCCAGGCCGGTCCTTNGCCGCCGTCCTTCCTTCGCCCGCCCGCCGCCGGCCTCTTCGTCGGGTCCGTCGTCCTCGCCGGGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAaaaa ]
[+] EMBL AU101298 [ GATTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaa ]
[+] EMBL AU198105 [ C TNGCCGCCGTCC TCC TTG CCG CCGCCGCCGGCCTTTTTGTCGGNTCCGTNGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCNCCGCAGGGTTTNATGATCNCTAGGACATGTACGTATTAATCCCCGTATTTATACAGTGCTTAGTGTGTTNCTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCNATGGATGATTGTGTAATTAGGGCCGGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU198168 [ C TNGCCGCCGTCC TCC TNG CCG CCGCCGCCGGCCTNTTTGTCGGNTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCGCCGCAGGGTTTGATGATCNCTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAA AAAAAAAAAAAAA ]
[+] EMBL AU057767 [ TCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTNATTAaaaaaaaa ]
consensusID : consensus_15846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence
[TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA]
[+] EMBL BM038870 [TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA]
consensusID : consensus_15846#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence
[GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA]
[+] EMBL BI797149 [GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA]
consensusID : consensus_15846#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC]
[+] EMBL OS37979 [CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15846#1 ------------------------------------------------------------
consensus_15846#2 ------------------------------------------------------------
consensus_15846#0 GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAAT 60
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 ------------------------------------------------------------
consensus_15846#2 ------------------------------------------------------------
consensus_15846#0 GGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCC 120
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 ------------------------------------------------------------
consensus_15846#2 ------------------------------------------------------------
consensus_15846#0 ACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGT 180
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 ------------------------------------------------------------
consensus_15846#2 ----------------------------------------------------------GG 2
consensus_15846#0 GAACAGGTACGACGAGAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGG 240
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 ------------------------TTTCAAGNAA--CTGGAGAGNCGGAAGGGTTCT--G 32
consensus_15846#2 GACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGA 62
consensus_15846#0 GAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAG--CTGGAGAGGCGGAAG-GTGCT--G 295
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 ACCACCGGTGGAG--AAGCCCGG---CTGNCTGTCCACGGGCC-GGAGGAGCTCGGC-GT 85
consensus_15846#2 ACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGT 122
consensus_15846#0 AGCAC-GGTGGAG--AAGGCCGGG--CTGC-TGTCC-AGGGC--GGAGGAGCTCGGC-GT 345
consensus_15846#3 -CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCC-----TGNNCCGGCCGC 54
* * * ** ** ** ** **** *
consensus_15846#1 CACTGCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 142
consensus_15846#2 CACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCC-AGGACCTCGGCC 181
consensus_15846#0 CAC-GCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 401
consensus_15846#3 CACCGCCGTTCGCG-------AGGAGGCGG-----CGCTTCAAGGTACACGCCCATGGGC 102
*** ** * * ** ***** * * ** * * * * ** ** *
consensus_15846#1 TCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCG 202
consensus_15846#2 TCCTCAGCCTCGTCGAGCCC--CGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 238
consensus_15846#0 TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 460
consensus_15846#3 NNCTCAG----AGAGAAGGTAGCACAGGCGACGGCGA-GAAGTGGTCCGATGCAGTGGTT 157
***** ** * * * ** * * ** * ** * * **
consensus_15846#1 CATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 259
consensus_15846#2 C-TCCCGCTCCTCGTCCC---GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCCA- 292
consensus_15846#0 C-TCCCGCTCCTCGTCGCC--GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 514
consensus_15846#3 CGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAA 217
* ** * * * * ** ** **** ** *
consensus_15846#1 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 318
consensus_15846#2 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGG 352
consensus_15846#0 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 573
consensus_15846#3 GAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGC-TGCTGTCCAGGG 276
* ** * *** ** * * ** * * * ** ** ** * * **
consensus_15846#1 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCG 377
consensus_15846#2 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCCC-- 408
consensus_15846#0 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCGCCG 631
consensus_15846#3 CGGAGGAGCTCGGCGTCA-CGCTCTCCTCG---CTCGAGGAGCTCGGCCTCCACTCCAAG 332
* * ***** * ** *** ** * ***** ** * **
consensus_15846#1 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 437
consensus_15846#2 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 468
consensus_15846#0 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 691
consensus_15846#3 GCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC-- 390
* * ** * * * * * *** * ****
consensus_15846#1 TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTN 497
consensus_15846#2 TGTGTTAAAAA------------------------------------------------- 479
consensus_15846#0 TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTT 751
consensus_15846#3 ------------------------------------------------------------
consensus_15846#1 CNCCGGCTGCAAACAAAAAAAAAA--------------------------------- 521
consensus_15846#2 ---------------------------------------------------------
consensus_15846#0 CA--GGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA 806
consensus_15846#3 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||