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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1193 fasta sequence
[ATCGCCGCCTCCACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCACCCACCAATGGC-GTCCTCCCGCCTCCTCCTCCTCGCCGC-GCTGCTCGCCACGGC-GGC-GGTGCTGGC-GGCGTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC-GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATC-TCCACCGGCGTCAACTGGGCGCTGCTC-TCCACCGTCGTC-AGCAAGGAC-TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG-CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT-AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG-CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC-TTTTTTTTTCCCATT-GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAAAAAAGAAAACCTA]
[+] EMBL AK058836 [ATCGCCGCCTCCACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCACCCACCAATGGC GTCCTCCCGCCTCCTCCTCCTCGCCAC GCTGCTCGCCACGGC GGC GGTGCTGGC GGCGTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAGCAACGTCAACATC TCCACCGGCGTCAACTGGGCGCTGCTC TCCACCGTCGTC AGCAAGGAC TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCGTCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCGTCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGAT ]
[+] EMBL AK099313 [ GCCTCCACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCACCCACCAATGGC GTCCTCCCGCCTCCTCCTCCTCGCCGC GCTGCTCGCCACGGC GGC GGTGCTGGC GGCGTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATC TCCACCGGCGTCAACTGGGCGCTGCTC TCCACCGTCGTC AGCAAGGAC TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCC ]
[+] EMBL AU222714 [ CGTCTGACTCCTCGCCACCACACCCACCCACCCACCAATGGC GTCCTCCCGCCTCCTCCTCCTCGCCGN GCTGCTCGCCACGGC GGC GGTGCTGGCNGGCGTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGNGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGT ]
[+] EMBL AU172457 [ TCCGATTCCTCGCCACCACACCCACCCACCCACCAATGGCAGTCCTCCCGCCTCCTCCTCCTCGCCGCAGCTGCTCGCCACGGCAGGCAGGTGCTGGN GGCGTCGCANAAGCCGAAGGCCGCCACGCCGACNAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGNTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGAGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGNGGTTCTACA ]
[+] EMBL AU069991 [ CGCCACCACACCCACCCACCCACCAATGGC GTCCTCCCGCCTCCTCCTCCTCGCCGC GCTGCTCGCCACGGC GGC GGTGCTGGC GGCGTCGCAGAAGCCGAA GCNGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACANCACCTTCCTCCGGCTCCTNCACGAGAGCCGGGTGGACAACCAGATCAACAGCCAGTTGATGGACAGTTACAACGGGTTGACCATGTTCGGGGCCACGGACGGCGCGTTCGGGGC TTCAAGCCGGGNACGTTAAATTCG TTTNGTCGGAAGGACCAGATC ]
[+] EMBL CB683643 [ ACACCCACCCACCCACCAATGGC GTCCTCCCGCCTCCTCCTCCTCGCCGC GCTGCTCGCCACGGC GGC GGTGCTGGC GGCGTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGCGGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAGCCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATC TCCACCGGCGTCAACTGGGCGCTGCTC TCCACCGTCGTC AGCAAGGAC TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCC ]
[-] EMBL CB683233 [ gacCAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTC GCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATC TCCACCGGCGTCAACTGGGCGCTGCTC TCCACCGTCGTC AGCAAGGAC TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAGAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATAAACGTAC ]
[+] EMBL AU164609 [ GCCGTCGAACAACAACGTCAACATCTTCCACCGGCGTCAACTGGGCGCTGCTCTTCCACCGTCGTCAAGCAAGGACTTTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAAAAAA ]
[+] EMBL CB685566 [ CAACGTCAACATC TCCACCGGCGTCAACTGGGCGCTGCTC TCCACCGTCGTC AGCAAGGAC TTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCNGGAAAAATGAAAACCTA]
[+] EMBL AU184608 [ CCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCCCAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGC ]
[+] EMBL AU184586 [ GCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTNT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAAaaa ]
[+] EMBL AU184609 [ CCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAAaaa ]
[+] EMBL OSS15452A [ AAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGNCGACGACGCCTCCGNCGACGACACCACCAAGAAGGCCGCCG CGCCCGNCACCGTCGTCTCCAGGTGGGTCGTCGCCGTCGCCGGTGTCTTGGCCGGCGCCATTCTCGNCGNCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGNATCG NCCATGCATGCCGNATGCACGATGACTGAACTGGAGTng ]
[+] EMBL AU162040 [ AAGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATTGGGATTCTACCGCATGAATCATTTCAAAATTTTCGNTCAAAAA ]
[+] EMBL AU182832 [ CCAAGAAGCNCAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCC TCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCaaaaa ]
[+] EMBL AU102036 [ AGTCCGCCGGGATCGCCGAGCCGCCCGTNGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATACGAATNCGAATTGATCGAGATCGATTNAACCGTGTACCGATATTGTTGTNCTGCTCTGTATGTCCATCGGNTTTATTCTTTCTCTTATTTTTTTTNGGGg ]
[+] EMBL AU172458 [ GATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCG CGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAA ]
[+] EMBL AU184084 [ GACGCCTCCGCCGGCGACACCACCAAGAAGGCCGCCGNGGCCCGCCACCGCCGTTTCCAGGTGGGTCGTCGCCNCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTTTNAAGCTAAGGAGACGACGACGACGACGAACAAATGCATCGCCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAAAAAA ]
[+] EMBL AU164657 [ CCGCCNTNT AAGCTAAGGAGACGACGACGACGACGAACAAATGCATCG CCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTAaaaaaaa ]
[+] EMBL AU223369 [ GCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTACTTTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAAaa ]
[+] EMBL AU089775 [ CGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTAC TTTTTTTTTCCCATT GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAAAAAAa ]
consensusID : consensus_15871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence
[AGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCGCGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTNTAAGCTAAGGAGACGACGACGACGACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGACTTTTTTTTTCCCAAAAAAAACAAAAA]
[+] EMBL AU182305 [AGACCAAGAAGCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTCGCCGACGACGCCTCCGCCGACGACACCACCAAGAAGGCCGCCGCGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTNTAAGCTAAGGAGACGACGACGACGACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGACTTTTTTTTTCCCAAAAAAAACAAAAA]
[+] EMBL AU223356 [ CGTCNCCGCCGCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTNTAAGTTAAGGAGACGACGACGACGACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAACCGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGCTCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTGTTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGtaaaaaaa ]
consensusID : consensus_15871#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[CCACCCACCAATGGCGTCCTCCCGCCTCCTCCTCCTCGCCGCGCTGCTCGCCANGGCGGCGGTGCTGGCGGCGTCGCANAAGCCGACGGCCCCGCGCCGACGAACGTGACGGCANTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGNTCCTCCACGAGAGCNGGGTGGACACCCAGATCAACAGCCAGCTGATGGACATCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGGGCNTTCAAAGCCGGGCACGNTCAACTCGCTGTCGTCGCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAAGCCTCGGCATGNTCAACAACCTCGGCGGGC]
[+] EMBL OSS4691A [CCACCCACCAATGGCGTCCTCCCGCCTCCTCCTCCTCGCCGCGCTGCTCGCCANGGCGGCGGTGCTGGCGGCGTCGCANAAGCCGACGGCCCCGCGCCGACGAACGTGACGGCANTGCTGGAGAAGTCCGGCAAGTACACCACCTTCCTCCGGNTCCTCCACGAGAGCNGGGTGGACACCCAGATCAACAGCCAGCTGATGGACATCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGGGCNTTCAAAGCCGGGCACGNTCAACTCGCTGTCGTCGCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTCTACAAGCCTCGGCATGNTCAACAACCTCGGCGGGC]
consensusID : consensus_15871#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence
[AGCTGATGGACAGNTACAACGGGCTGACCATGTTNGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTTGCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTNTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATCTCCACCGGCGTCAACTGGACTGTTAAGCAATCGACATGGCGCGCGGCGCTGTCTGCTGGTGTTTAAACACTTTTTTCTTGAAAATTAAAGAAGCTTATAGTAAAAAAAAA]
[+] EMBL AU223436 [AGCTGATGGACAGNTACAACGGGCTGACCATGTTNGCGCCCACGGACGCCGCGTTCGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTTGCAGGACCAGATCCAGCTGATGCTCTACTGCGTGCTCCCGCGGTTNTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGTGAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAACAACGTCAACATCTCCACCGGCGTCAACTGGACTGTTAAGCAATCGACATGGCGCGCGGCGCTGTCTGCTGGTGTTTAAACACTTTTTTCTTGAAAATTAAAGAAGCTTATAGTAAAAAAAAA]
consensusID : consensus_15871#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 340 fasta sequence
[ACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCANCCACCAATGGCGTCCTCCCGCCTACTCCTCCTGGNCGNGCTGCTCGCCACGGCGGCGGTGCTGGNGGNGTCGNAGANGTNGNAGCANNNACGNNNACGAAGNNCACGNCGNNCGATNNNCGAGACCANGNNNANANNNNCNNACGANCCCNANNAGTCGCTNANTTNANGANNGTNCTTNTACGNAGTNCNNNNNANCANATCNCNNNNNTTNCGAATCNTANCNGNNTNNCCNANNCACNANNAGGANTNTACANNACNTNATNCATACCANCNCANTNAAAANGNANNTNTNNCNNNT]
[+] EMBL OSR07181A [ACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCANCCACCAATGGCGTCCTCCCGCCTACTCCTCCTGGNCGNGCTGCTCGCCACGGCGGCGGTGCTGGNGGNGTCGNAGANGTNGNAGCANNNACGNNNACGAAGNNCACGNCGNNCGATNNNCGAGACCANGNNNANANNNNCNNACGANCCCNANNAGTCGCTNANTTNANGANNGTNCTTNTACGNAGTNCNNNNNANCANATCNCNNNNNTTNCGAATCNTANCNGNNTNNCCNANNCACNANNAGGANTNTACANNACNTNATNCATACCANCNCANTNAAAANGNANNTNTNNCNNNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15871#0 ATCGCCGCCTCCACCACCGTTCGTCCGATTCCTCGCCACCACACCCACCCACCCACCAAT 60
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GGCGTCCTCCCGCCTCCTCCTCCTCGCCGCGCTGCTCGCCACGGCGGCGGTGCTGGCGGC 120
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GTCGCAGAAGCCGAAGGCCGCCACGCCGACGAAGGCCACGCCGGCGTCGCCCGGCCCCGC 180
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GGCGGCGGCGGCCGACGGCCCCGCGCCGACGAACGTGACGGCAGTGCTGGAGAAGTCCGG 240
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CAAGTACACCACCTTCCTCCGGCTCCTCCACGAGAGCCGGGTGGACACCCAGATCAACAG 300
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CCAGCTGATGGACAGCTACAACGGGCTGACCATGTTCGCGCCCACGGACGCCGCGTTCGC 360
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTCGCAGGACCAGATCCAGCTGATGCT 420
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CTACTGCGTGCTCCCGCGGTTCTACAGCCTCGCCATGCTCACCACCCTCGGCGGCCCCGT 480
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GAACACGCAGGCGTCCGGCGCCGACGGCCCGTACAAGTACAAGATCAAGCCGTCGAACAA 540
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CAACGTCAACATCTCCACCGGCGTCAACTGGGCGCTGCTCTCCACCGTCGTCAGCAAGGA 600
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CTTCCCCCTCGCCGTCTACTCCGTCGACAAGGTGCCGCTCCCCTACGAGCTGTTCGGCCC 660
consensus_15871#1 ------------------------------------------------------------
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 CAAGCCGCCCACGCCCGCGCCGGCGCCGGCGCCCGCGCCGTCCAAGTCCAAGACCAAGAA 720
consensus_15871#1 --------------------------------------------------AGACCAAGAA 10
consensus_15871#4 ----------------------------------------------------ACCACCGT 8
consensus_15871#2 ------------------------------------------------------------
consensus_15871#3 ------------------------------------------------------------
consensus_15871#0 GCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTC--GCCGACGACGCCTCCGCCGAC 778
consensus_15871#1 GCACAAGAAGTCCGCCGGGATCGCCGAGCCGCCCGTC--GCCGACGACGCCTCCGCCGAC 68
consensus_15871#4 TCGTCCGA--TTCCTCGCCACCAC--ACCCACCCANCC-ACCAATGGCGTCCTC-CCGCC 62
consensus_15871#2 -CCACCCA--CCAATGGCGTCCTCCCGCCTCCTCCTCCTCGCCGCGCTGCTCGCCANGGC 57
consensus_15871#3 --AGCTGA--TGGACAGN-TACAACGGGCTGACCATGTTNGCGCCCACGGACGCCGCGTT 55
* * * * * * * * *
consensus_15871#0 GACACCACCAAGAAGGCCGCCGCGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCC 838
consensus_15871#1 GACACCACCAAGAAGGCCGCCGCGCCCGCCACCGCCGTCTCCAGGTGGGTCGTCGCCGCC 128
consensus_15871#4 TACTCCTCCTGGNCGN--GCTGCTCGCCACGGCGGCGGTGCTGGNGGNGTCGNAGANGTN 120
consensus_15871#2 GGCGGTGCT---GGCGGCGTCGCANAAGCCGACGGCCCCGCGCCGACGAACGTGACGGCA 114
consensus_15871#3 CGCGGCGCTCAAGCCGGGCACGCTCAACTCGCTGTCGTTGCAGGACCAGATCCAGCTGAT 115
* * ** * * * * *
consensus_15871#0 GCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTCTAAGCTAAGGAGACGACGACGACG 898
consensus_15871#1 GCCGGTGTCTTGGCCGGCGCCATTCTCGCCGCCCTNTAAGCTAAGGAGACGACGACGACG 188
consensus_15871#4 GN-AGCANNNACGNNNACGAAGNNCACGNCGNNCGATNNNC-GAGACCANGNNNANANNN 178
consensus_15871#2 NT-GCTG--GAGAAGTCCGGCAAGTACACCACCTTCCTCCGGNTCCT--CCACGAGAGCN 169
consensus_15871#3 GC-TCTACTGCGTGCTCCCGCGGTTNTACAGCCTCGCCATGCTCACCACCCTCGGCGGCC 174
*
consensus_15871#0 ACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAAC 958
consensus_15871#1 ACGAACAAATGCATCGCCCATGCATGCCGTATGCACGATGACTGAACTGGAGTGGTGAAC 248
consensus_15871#4 NCNNACGANCCCNANNAGT-CGCTNANTTNANGANNGTNCTTNTACGNAGTNCNNNNNAN 237
consensus_15871#2 GGGTGGACACCCAGATCAACAGCCAGCTGATGGACATCTACAACGGGCTGACCATGTTCG 229
consensus_15871#3 CCGTGAACACGCAGGCGTCCGGC--GCCGACGGCC-CGTACAAGTACAAGATCAAGCCGT 231
* ** * *
consensus_15871#0 CGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGC 1018
consensus_15871#1 CGAATCCGAATCCGAATTGATCGAGATCGATTGAACCGTGTACCGATATTGTTGTGCTGC 308
consensus_15871#4 CANATCNCNNNNNTTNCGAATCNTANCNGNNTNNCCNANNCACNANNAGGANTNTACANN 297
consensus_15871#2 CGCCCACGGACGCCG-CGTTCGGGCNTTCAAAGCCGGGCACGNTCAACTCGCTGTCGTCG 288
consensus_15871#3 CGAACAACAACGTCAACATCTCCACCGGCGTCAACTGG-ACTGTTAAGCAATCGACATGG 290
*
consensus_15871#0 TCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTG 1078
consensus_15871#1 TCTGTATGTCCATCGGCTTTATTCTTTCTCTTATTTTTTTTGGGGTTATAAAATTTCTTG 368
consensus_15871#4 ACNTNATNCATACCANCNCANTNAAAANGNANNTNTNNCNNNT----------------- 340
consensus_15871#2 CAGGACCAGAT-CCAGCTGATGCTCTACTGCGTGCTCCC-GCGGTTCTACAAGCCTCGGC 346
consensus_15871#3 CGCGCGGCGCTGTCTGCTGGTGTTTAAACACTTTTTTCTTGAAAATTAAAGAAGCTTATA 350
* * *
consensus_15871#0 TTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTGTACTTTTTTTTTCCCATT 1138
consensus_15871#1 TTGATTTGTATTTGTAATTTATGTGATATACTTACTAGAGTG-ACTTTTTTTTTCCCAAA 427
consensus_15871#4 ------------------------------------------------------------
consensus_15871#2 ATGNTCAACAACCTCGGCGGGC-------------------------------------- 368
consensus_15871#3 GTAAAAAAAAA------------------------------------------------- 361
consensus_15871#0 GGATTCTACCGCATGAATCATTTCAAAATTTTCGATCAAAAAAAAAGAAAACCTA 1193
consensus_15871#1 AAAAACAAAAA-------------------------------------------- 438
consensus_15871#4 -------------------------------------------------------
consensus_15871#2 -------------------------------------------------------
consensus_15871#3 -------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||