cluster # 15896

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Oryza sativa
cluster # 15896 cluster # 15896 Sequences # 26 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15896#0 length = 1201 sequences # 22
consensus_15896#1 length = 588 sequences # 1

consensus_15896#2 length = 236 sequences # 1
consensus_15896#3 length = 95 sequences # 2

consensusID : consensus_15896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 1201
fasta sequence

                              [TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT-GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT-GC-TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT-AGAAATT-GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG-CAACAAGGTTGATATGGAT-ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT-CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT-GCAAGGGACATAAAGCAAAGATTGACCGAAACT-GTTGCTGCAGCAGCTGAGCCCCCA-ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC-CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCAAAAAAAAA]

[+] EMBL CF279031             [TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGTTGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK111552             [           CGTTCCGTCTCTTCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCT              ]
[+] EMBL AU070029             [                                                          ACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAG GGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CF333891             [                                                               TACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCAAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCGNTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK104473             [                                                                               TACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTACCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATC                                                          ]
[+] EMBL AK104346             [                                                                               TACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTACCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATC                                                          ]
[+] EMBL AU162773             [                                                                                            CACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA CGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCTGGC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATTGGGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCNGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGNCATAAAGCGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL OSC111511            [                                                                                               ACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA NGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGNATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU069375             [                                                                                                CGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU070228             [                                                                                                                  CGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA CGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GCTTTGTTTATGATGTTACAGACGNGTCATCCTTCAACAACATTAAGAAATT GGATCCGC ACATAAGACAACATGCATNTGATAATGTC ACAA ATTTTGGGGGG C                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CF326159             [                                                                                                                                                                                            TCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU057712             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TT GNATCCGCAAC TNGGACCACATGCATCTGATAATGTC ACAAGATTTTGGTGGGCCAACAAGGTTNATATGGATNCCAAACCGGGTGGTGTCCACAGCTCAAGGACAAAAGCTCCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAANACAAATCAGAACGTGGAGCAGGTATTCTTTACCATTGGCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAG TGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTAAAAAAAAAAAAAA]
[-] EMBL CF333890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTNTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTTTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaaaa                    ]
[-] EMBL CF279030             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACTGGTTGCTGCAGCAGCTGAGCCCCCACACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGGTGTATATTTCGCCCAGTTGATATTTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTTTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaaaaa                   ]
[+] EMBL CA766708             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAC                            ]
[+] EMBL AU166150             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaa                      ]
[+] EMBL BI799653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTACCATC CCAAGGAACATAAACCAAAGATTGACCGAAACT GTTGCT CA CAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCA GCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACCAACCTTCTAAGAGACA CAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCAAAA     ]
[+] EMBL AU181873             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaaaaaaa                     ]
[-] EMBL AU165004             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCCCAAAAA  ]
[+] EMBL CF311977             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaa                          ]
[-] EMBL CF311978             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTCNCCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaaa                         ]
[+] EMBL BE607469             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGAT                     ]




>consensus_15896#0
TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCAC
TTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCT
ACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATG
GCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATC
GGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACT
ACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGA
AAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACA
ACTGCCTACTATAGAGGTGCTATGGGCATTCTGCTTGTTTATGATGTTACAGACGAGTCA
TCCTTCAACAACATTAGAAATTGGATCCGCAACATAGAACAACATGCATCTGATAATGTC
AACAAGATTTTGGTGGGCAACAAGGTTGATATGGATACAAAGCGGGTGGTGTCCACAGCT
CAAGGACAAAAGCTCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACA
AATCAGAACGTGGAGCAGGTATTCTTTACCATTGCAAGGGACATAAAGCAAAGATTGACC
GAAACTGTTGCTGCAGCAGCTGAGCCCCCAACTATTCAAATCAGTAGGCAAGAACCAGAT
CAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGC
ACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTCCCATCTT
CCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTT
TTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTT
CTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTC
GTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGT
ATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCAAAAAAAA
A

consensusID : consensus_15896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACAACTGAGAGATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGAGNCTCCCCCCCTACGTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGCAAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGGCGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNTACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTTGATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATGAGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCAAACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACACAACCTTCTAAGAGACACCGTATCTGATNCCTCTGAAAAAAAAAA]

[+] EMBL BM420619             [CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACAACTGAGAGATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGAGNCTCCCCCCCTACGTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGCAAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGGCGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNTACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTTGATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATGAGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCAAACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACACAACCTTCTAAGAGACACCGTATCTGATNCCTCTGAAAAAAAAAA]




>consensus_15896#1
CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACAACTGAGAGAT
GCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGAGNC
TCCCCCCCTACGTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGCAAGA
CGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGGCGCA
CTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNTACCA
CTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTTGATA
TCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATGAGGT
GTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCAAACT
CTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAA
ACACAACCTTCTAAGAGACACCGTATCTGATNCCTCTGAAAAAAAAAA

consensusID : consensus_15896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [TTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAAAAAAAAAAAAAAAAAAAAAACTCAGACTA]

[-] EMBL CA758599             [TTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAAAAAAAAAAAAAAAAAAAAAACTCAGACTA]




>consensus_15896#2
TTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTT
GTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGC
TGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTC
TGAATTCATGATTGTGCATTACTGAAAAAAAAAAAAAAAAAAAAAAACTCAGACTA

consensusID : consensus_15896#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 95
fasta sequence

                              [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG]

[+] EMBL CB966748             [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG]
[+] EMBL BU672934             [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG]




>consensus_15896#3
AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCT
GACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15896#0      TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCAC 60
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      TTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCT 120
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      ACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATG 180
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      GCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATC 240
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      GGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACT 300
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      ACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGA 360
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      AAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACA 420
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      ACTGCCTACTATAGAGGTGCTATGGGCATTCTGCTTGTTTATGATGTTACAGACGAGTCA 480
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      TCCTTCAACAACATTAGAAATTGGATCCGCAACATAGAACAACATGCATCTGATAATGTC 540
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      AACAAGATTTTGGTGGGCAACAAGGTTGATATGGATACAAAGCGGGTGGTGTCCACAGCT 600
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ------------------------------------------------------------
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      CAAGGACAAAAGCTCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACA 660
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      --CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACA-ACTGAGA 57
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      AATCAGAACGTGGAGCAGGTATTCTTTACCATTGCAAGGGACATAAAGCAAAGATTGACC 720
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      GATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGA 117
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      GAAACTGTTGCTGCAGCAGCTGAGCCCCCAACTATTCAAATCAGTAGGCAAGAACCAGAT 780
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      GNCTCCCCCCCTAC-GTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGC 176
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      CAGGCAGCTGCCTC-GTCAAGATGGTCAGCCTGCTGTAACACCTG-ATCAACGCTGC-GG 837
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      AAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGG 236
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      CGCACTG-CAC-GGCTTGT---CCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACT 892
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      CGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNT 296
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      CCCATCTTCCGTGTATTCAATGCCA--------------AGATGTATATTTCGCCCAGTT 938
consensus_15896#2      ------------------------------------------------------------
consensus_15896#1      ACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTT 356
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      GATATCTAGGTCAAAAGATCTTT-TACCTGACCA-TTCTGGTGTTGTGATTCCTCA-ATG 995
consensus_15896#2      -----------------------------------TTCTGGTGTTGTGATTCCTCA-ATG 24
consensus_15896#1      GATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATG 416
consensus_15896#3      ------------------------------------------------------------
                                                                                   

consensus_15896#0      AGGTGTAAGGGTG-TTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAA 1054
consensus_15896#2      AGTTGTAAGGGTG-TTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAA 83
consensus_15896#1      AGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCA 476
consensus_15896#3      ---------------------------------------------------------AGA 3
                                                                                  *

consensus_15896#0      AACTCTTCTT-TTTTAGCTCTG-TGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 1112
consensus_15896#2      AACTCTTCTT-TTTTAGCTCTG-TGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 141
consensus_15896#1      AACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 536
consensus_15896#3      TACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGAC 63
                        ***  *     **      *  * * * * * *  ***  **  **  ***  * * * 

consensus_15896#0      GTAAACA-AACCTTCTAAGAGACAGCAGTATCTGATTG-TCTGAATTCATGATTGTGCAT 1170
consensus_15896#2      GTAAACA-AACCTTCTAAGAGACAGCAGTATCTGATTG-TCTGAATTCATGATTGTGCAT 199
consensus_15896#1      GTAAACACAACCTTCTAAGAGACA-CCGTATCTGATNCCTCTGAAAAAAAAAA------- 588
consensus_15896#3      GAACACAGAGCTAAAAAAAAAAAAACAGAGCG---------------------------- 95
                       * * *** * *     ** * * * * *                                

consensus_15896#0      TACTGAAGATTTGTCCTATTTCAAAAAAAAA--------- 1201
consensus_15896#2      TACTGAAAA---AAAAAAAAAAAAAAAAAAACTCAGACTA 236
consensus_15896#1      ----------------------------------------
consensus_15896#3      ----------------------------------------