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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1420 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----GGATTTAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC-AAGTAGTACAATTCC-TGTTCTGCCAAAAAAAAACATTCTCT-GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC-TCTATTCAGGCATTCAGTTCTGTAAGAA-CCCTTTTGGTGCATTATACAGGAAAGATTA-GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT-TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA-CAT-GATGAAGACATGCATGACCGCCGTCACCAG-TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA-AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC-TCATCAAAA-GTGCCT-GT-CGCCAAATGCTTATCCAGTAA-TGCATCC--TTT-GCTAC-AAAGATGTCTTTGCACCATTTTGAAACATC-GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA-CCACTGAA-GATTGCCCTTTC-AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA-TTTCAATGTCTTTTCATCC-TTTGCCC-AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG-AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT-CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL AU165566 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAGGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTT ]
[-] EMBL AU055933 [ TTTTTTTTTTT TTTAAGTTTCACNGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGGACCATTTTGAAACATCGGTCTTCTGACTTTGGNATCNCACTCATTGNATGACGTTTCATGCGAACATGGA CCACTGAA GATTGCCC ]
[+] EMBL CB682849 [ tcTTTTTTTTT GGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTT ]
[-] EMBL AU056595 [ TTTTTTTTT TTTAAGTTTCACNGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGNTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CATGGATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGGCCGTAAACCCGACTCCTTTCCATGTCG ]
[+] EMBL CF307967 [ TTTTTT TTT TTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACA ]
[-] EMBL BQ908722 [ ggagaca GGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAAAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATNTGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCG CGTCACCAG TGCGAGCCCAAGGCCCGTAAA CCGACTCCTTTCCATG ]
[+] EMBL CB654546 [ GATATAAGTTTCACTGATACCTCTTTCACTAAAGGGCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAAAATCTC TCTATTCAGGGATTCAGTTCTGTAAGAA CCCTTTTGGGGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAACTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCAT ]
[-] EMBL AU029798 [ tttTTTAAGTNTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTNCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTNCTGTAAGAACCCCTTTTGGTGCATTATACAGGNAAGATTANGGCCCTCAATTTTGTTGCCTAAATGNATCCAATACC ]
[+] EMBL CB620802 [ TAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAAAGTTGCTAGTTCACCAAATCTCCTAAAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCAT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCGTGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTG ]
[-] EMBL BI798799 [ ttttttttTTTCACTGATACATAAATCACTAAGGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCGTCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAAAGATTA GGCCCTCAA TTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCG CTTGG TGAGCTCGATCGCTCTGACTGTGAGAACCAT GATGAAGACATGCATGACCGGCGTCACCAGCTGCGAG CCAAGG CCGTAAAACCGg ]
[+] EMBL CB644086 [ CTGAACAAATCCAGACTGCTGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGAT ]
[+] EMBL CB644132 [ CTGAACAAATCCAGACTCATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGA ]
[-] EMBL BI808578 [ tttttttttGAAGTTCCAATAAATACGAAGTAGTACAATTCCGTGTTCTGCC AAAAAAAACATTCTCTGGAAAATACAGCACAACAAAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAGAGATTA GGCCCTCAA TTTG TGCCTACATGAATTCAATACCCAATTAA TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCGGCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGG GCCATATAAAAGGAGACATGACCAAAACAAGAGTCACCAGCAATGATTTTACTGGGCGG CAATTAGTCTAATCTCCTTCATCAAAAGGTGCATGGTCCGCCAAATGCTTATCCAGTAAGTGCATCCCTTTTGGCTACAAAAGATGTCTTT ]
[-] EMBL AU055932 [ TTGCATGCCGTTTCATGCGNACATGTACCCACTGAAGGATTGCCCTTTCAAAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTNCTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGT ]
[-] EMBL CB644085 [ TAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CB654545 [ GCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CB620801 [ CCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCCGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACCCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CB644127 [ CGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CB682848 [ TTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CB676688 [ ACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL AU162701 [ CCATTTTNAATGTCTTTTCATCCTTTTGCCCAAGCTCNTTTCCAAAAAGAGGTATTCTGCAAACCACTTGGACCAGCCAATAACTGGAAAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCAAAGGCATCCTGAGCGCTGTGCCCAAATCCCACCCAATAANCCAATCGATATCGCTCCNATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
[-] EMBL CF294790 [ GCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA]
consensusID : consensus_15915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCATTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATACAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTTCTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTGTTTCAATCTTTCTTGACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGGCCCGTAAACCCGACTC]
[+] EMBL CF307978 [GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCATTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATACAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTTCTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTGTTTCAATCTTTCTTGACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGGCCCGTAAACCCGACTC]
consensusID : consensus_15915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[TTTTTTTTTTTTTTTACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATACAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCATTCAGTTCTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTTCCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCGGATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAGTGGGGAGCCCAAGGGGCCGG]
[-] EMBL AU164166 [TTTTTTTTTTTTTTTACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATACAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCATTCAGTTCTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTTCCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCGGATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAGTGGGGAGCCCAAGGGGCCGG]
consensusID : consensus_15915#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence
[TTAAGTCTCACTGGTACCTAAATCACTAAAGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATACCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAACATTCTTTGAAAATACAGCACAACAGAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGCTTCAGTTCTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTACATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGGAGACTCTATCTTCATCTCTTTCAATCTTTCTT]
[+] EMBL CF294789 [TTAAGTCTCACTGGTACCTAAATCACTAAAGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATACCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAACATTCTTTGAAAATACAGCACAACAGAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGCTTCAGTTCTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTACATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGGAGACTCTATCTTCATCTCTTTCAATCTTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15915#2 ---------------------------------------------------TTTTTTTT- 8
consensus_15915#3 ------------------------------------------TTAAGTCTCACTGGTAC- 17
consensus_15915#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTAAGTTTCACTGATAC- 59
consensus_15915#1 -------------------------GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCA 35
* *
consensus_15915#2 TTTTTTTACTAA--AGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATA 66
consensus_15915#3 CTAAATCACTAA--AGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATA 75
consensus_15915#0 ATAAATCACTAA--AGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATA 117
consensus_15915#1 TTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATA 95
* * * * * ** * * * * * **** ** * ** * ******
consensus_15915#2 CAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACA 126
consensus_15915#3 CCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAA-CATTCTTTGAAAATACAGCACAACA 134
consensus_15915#0 CAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAA-CATTCTCTGAAAATACAGCACAACA 176
consensus_15915#1 CAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAA--CATTCTCTGAAAATACAGCACAACA 153
* ****** ********* **** ********* ****** ******************
consensus_15915#2 GAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCA-TTCAGTT 185
consensus_15915#3 GAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGC-TTCAGTT 193
consensus_15915#0 GAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCA-TTCAGTT 235
consensus_15915#1 GAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTT 213
******* ** **** ** ******** *** ***** * *** ** *******
consensus_15915#2 CTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 245
consensus_15915#3 CTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTA 253
consensus_15915#0 CTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 295
consensus_15915#1 CTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 273
*** ** *********** ******************** * *********** ** ***
consensus_15915#2 CATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTT 305
consensus_15915#3 CATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGG-AGACTCTATCTT 312
consensus_15915#0 CATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGC-AGACTCTATCTT 354
consensus_15915#1 CATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGC-AGACTCTATCTT 332
***** ******************** *********** ******* ************
consensus_15915#2 CCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCG 365
consensus_15915#3 C-ATCTCTTTC-AATCTTTCTT-------------------------------------- 332
consensus_15915#0 C-ATCTCTTTC-AATCTTTCTTG-ACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGC 411
consensus_15915#1 C-ATCTGTTTC-AATCTTTCTTG-ACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGC 389
* **** **** **********
consensus_15915#2 GATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAG 425
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGG 471
consensus_15915#1 TCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGG 449
consensus_15915#2 TGGGGAGCCCAAGGGGCCGG---------------------------------------- 445
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 CCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACG 531
consensus_15915#1 CCCGTAAACCCGACTC-------------------------------------------- 465
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 GCGCCATATAAAAGGAGACATGACCAAAACAAAGTCACCAGCAATGATTTTACTGGGCGG 591
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 CCAATTGGTCTAATCTCCTCATCAAAAGTGCCTGTCGCCAAATGCTTATCCAGTAATGCA 651
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TCCTTTGCTACAAAGATGTCTTTGCACCATTTTGAAACATCGTCTTCTGACTTTGGCATC 711
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TCACTCATTGCATGACGTTTCATGCGAACATGTACCACTGAAGATTGCCCTTTCAAAATC 771
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 CGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCT 831
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 GGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAAT 891
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 ACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTT 951
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 GCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCC 1011
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TTCAACCTTTGGAGGCCCCATTTCAATGTCTTTTCATCCTTTGCCCAGCTCCTTTCCAAA 1071
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 AAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGGAAGGAATTTCGATGATTTC 1131
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAATCCACCCAATA 1191
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 AGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCC 1251
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 TTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGC 1311
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 ------------------------------------------------------------
consensus_15915#3 ------------------------------------------------------------
consensus_15915#0 CAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTC 1371
consensus_15915#1 ------------------------------------------------------------
consensus_15915#2 -------------------------------------------------
consensus_15915#3 -------------------------------------------------
consensus_15915#0 TTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA 1420
consensus_15915#1 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||