These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1420 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT----GGATTTAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC-AAGTAGTACAATTCC-TGTTCTGCCAAAAAAAAACATTCTCT-GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC-TCTATTCAGGCATTCAGTTCTGTAAGAA-CCCTTTTGGTGCATTATACAGGAAAGATTA-GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT-TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA-CAT-GATGAAGACATGCATGACCGCCGTCACCAG-TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA-AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC-TCATCAAAA-GTGCCT-GT-CGCCAAATGCTTATCCAGTAA-TGCATCC--TTT-GCTAC-AAAGATGTCTTTGCACCATTTTGAAACATC-GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA-CCACTGAA-GATTGCCCTTTC-AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA-TTTCAATGTCTTTTCATCC-TTTGCCC-AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG-AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT-CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL AU165566 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACAGGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTT ] [-] EMBL AU055933 [ TTTTTTTTTTT TTTAAGTTTCACNGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGGACCATTTTGAAACATCGGTCTTCTGACTTTGGNATCNCACTCATTGNATGACGTTTCATGCGAACATGGA CCACTGAA GATTGCCC ] [+] EMBL CB682849 [ tcTTTTTTTTT GGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTT ] [-] EMBL AU056595 [ TTTTTTTTT TTTAAGTTTCACNGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGNTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CATGGATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGGCCGTAAACCCGACTCCTTTCCATGTCG ] [+] EMBL CF307967 [ TTTTTT TTT TTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACA ] [-] EMBL BQ908722 [ ggagaca GGATATAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAAAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATNTGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCG CGTCACCAG TGCGAGCCCAAGGCCCGTAAA CCGACTCCTTTCCATG ] [+] EMBL CB654546 [ GATATAAGTTTCACTGATACCTCTTTCACTAAAGGGCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAAAATCTC TCTATTCAGGGATTCAGTTCTGTAAGAA CCCTTTTGGGGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAACTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCAT ] [-] EMBL AU029798 [ tttTTTAAGTNTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTNCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTNCTGTAAGAACCCCTTTTGGTGCATTATACAGGNAAGATTANGGCCCTCAATTTTGTTGCCTAAATGNATCCAATACC ] [+] EMBL CB620802 [ TAAGTTTCACTGATACATAAATCACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAAAGTTGCTAGTTCACCAAATCTCCTAAAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCAT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCGTGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTG ] [-] EMBL BI798799 [ ttttttttTTTCACTGATACATAAATCACTAAGGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCC AAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCGTCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAAAGATTA GGCCCTCAA TTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCG CTTGG TGAGCTCGATCGCTCTGACTGTGAGAACCAT GATGAAGACATGCATGACCGGCGTCACCAGCTGCGAG CCAAGG CCGTAAAACCGg ] [+] EMBL CB644086 [ CTGAACAAATCCAGACTGCTGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGAT ] [+] EMBL CB644132 [ CTGAACAAATCCAGACTCATGTAGAAGTTCCAATAAATAC AAGTAGTACAATTCC TGTTCTGCCAAAAAAAAACATTCTCT GAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCCTTTTGGTGCATTATACAGGAAAGATTA GGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAAT TGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAA CAT GATGAAGACATGCATGACCGCCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGGCGCCATATAAAAGGAGACATGACCAAAACAA AGTCACCAGCAATGATTTTACTGGGCGGCCAATTGGTCTAATCTCC TCATCAAAA GTGCCT GT CGCCAAATGCTTATCCAGTAA TGCATCC TTT GCTAC AAAGATGTCTTTGCACCATTTTGAAACATC GTCTTCTGACTTTGGCATCTCACTCATTGCATGACGTTTCATGCGAACATGTA CCACTGAA GATTGCCCTTTC AAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGA ] [-] EMBL BI808578 [ tttttttttGAAGTTCCAATAAATACGAAGTAGTACAATTCCGTGTTCTGCC AAAAAAAACATTCTCTGGAAAATACAGCACAACAAAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTC TCTATTCAGGCATTCAGTTCTGTAAGAA CCC TTTGGTGCATTATACAGGAGAGATTA GGCCCTCAA TTTG TGCCTACATGAATTCAATACCCAATTAA TGGTAGCTCCCATTGATAAGCTGTAGACTCTATCTTCATCTCTTTCAATCTTTCTTGACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGCTCTGACTGTGAGAA CAT GATGAAGACATGCATGACCGGCGTCACCAG TGCGAGCCCAAGGCCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACGG GCCATATAAAAGGAGACATGACCAAAACAAGAGTCACCAGCAATGATTTTACTGGGCGG CAATTAGTCTAATCTCCTTCATCAAAAGGTGCATGGTCCGCCAAATGCTTATCCAGTAAGTGCATCCCTTTTGGCTACAAAAGATGTCTTT ] [-] EMBL AU055932 [ TTGCATGCCGTTTCATGCGNACATGTACCCACTGAAGGATTGCCCTTTCAAAAATCCGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTNCTGTTGTATCATAAATAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGT ] [-] EMBL CB644085 [ TAGCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CB654545 [ GCTGGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CB620801 [ CCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCCGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACCCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CB644127 [ CGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CB682848 [ TTTGTACGTGGAATCAATACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CB676688 [ ACAGCATACTCCTGAGCTGCTAGAAGCTTTGCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCCTTCAACCTTTGGAGGCCCCA TTTCAATGTCTTTTCATCC TTTGCCC AGCTCCTTTCCAAAAAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL AU162701 [ CCATTTTNAATGTCTTTTCATCCTTTTGCCCAAGCTCNTTTCCAAAAAGAGGTATTCTGCAAACCACTTGGACCAGCCAATAACTGGAAAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCAAAGGCATCCTGAGCGCTGTGCCCAAATCCCACCCAATAANCCAATCGATATCGCTCCNATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] [-] EMBL CF294790 [ GCAAACCACATGGACCAGCCAATAACTGG AAGGAATTTCGATGATTTCTTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAAT CCACCCAATAAGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCCTTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGCCAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTCTTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA] consensusID : consensus_15915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCATTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATACAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTTCTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTGTTTCAATCTTTCTTGACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGGCCCGTAAACCCGACTC] [+] EMBL CF307978 [GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCATTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATACAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTTCTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGCAGACTCTATCTTCATCTGTTTCAATCTTTCTTGACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGCTCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGGCCCGTAAACCCGACTC] consensusID : consensus_15915#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [TTTTTTTTTTTTTTTACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATACAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCATTCAGTTCTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTTCCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCGGATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAGTGGGGAGCCCAAGGGGCCGG] [-] EMBL AU164166 [TTTTTTTTTTTTTTTACTAAAGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATACAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACAGAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCATTCAGTTCTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTACATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTTCCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCGGATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAGTGGGGAGCCCAAGGGGCCGG] consensusID : consensus_15915#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [TTAAGTCTCACTGGTACCTAAATCACTAAAGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATACCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAACATTCTTTGAAAATACAGCACAACAGAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGCTTCAGTTCTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTACATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGGAGACTCTATCTTCATCTCTTTCAATCTTTCTT] [+] EMBL CF294789 [TTAAGTCTCACTGGTACCTAAATCACTAAAGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATACCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAACATTCTTTGAAAATACAGCACAACAGAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGCTTCAGTTCTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTACATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGGAGACTCTATCTTCATCTCTTTCAATCTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15915#2 ---------------------------------------------------TTTTTTTT- 8 consensus_15915#3 ------------------------------------------TTAAGTCTCACTGGTAC- 17 consensus_15915#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATTTAAGTTTCACTGATAC- 59 consensus_15915#1 -------------------------GTGTCTTTTTTTTTTTTTTTTTTTTTATTGTTTCA 35 * * consensus_15915#2 TTTTTTTACTAA--AGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATA 66 consensus_15915#3 CTAAATCACTAA--AGGGCTTCTGAACAAATCCCGACTGGTGGAAAAGTTCCAATAAATA 75 consensus_15915#0 ATAAATCACTAA--AGGTCTTCTGAACAAATCCAGACTGATGTAGAAGTTCCAATAAATA 117 consensus_15915#1 TTATTTTATTTTTTGGTTTTTTTTATCTTTTTCTTACTGTTGTTTATTTTTCTTTAAATA 95 * * * * * ** * * * * * **** ** * ** * ****** consensus_15915#2 CAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAAACATTCTCTGAAAATACAGCACAACA 126 consensus_15915#3 CCAGTAGTACAATTCCTGGTCTGGCAAAAAAAAA-CATTCTTTGAAAATACAGCACAACA 134 consensus_15915#0 CAAGTAGTACAATTCCTGTTCTGCCAAAAAAAAA-CATTCTCTGAAAATACAGCACAACA 176 consensus_15915#1 CAAGTAGTGCAATTCCTGTTCTGCCAAAAAAAA--CATTCTCTGAAAATACAGCACAACA 153 * ****** ********* **** ********* ****** ****************** consensus_15915#2 GAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCA-TTCAGTT 185 consensus_15915#3 GAGCTCAAAGGTGCTAGTTCACCAAATCTTCTAAAATCTTTTTATTCAGGGC-TTCAGTT 193 consensus_15915#0 GAGCTCAGAGTTGCTAGTTCACCAAATCTCCTAGAATCTCTCTATTCAGGCA-TTCAGTT 235 consensus_15915#1 GAGCTCAGAGTTGCTTTTTTTCCAAATCTCCTAGAATCTCTCTATGGGGGCAATTCAGTT 213 ******* ** **** ** ******** *** ***** * *** ** ******* consensus_15915#2 CTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 245 consensus_15915#3 CTGGAAAAACCCTTTTGGGGCATTATACAGGAAAGATTAAGGCCTCAATTTTGGTGGCTA 253 consensus_15915#0 CTGTAAGAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 295 consensus_15915#1 CTGTAAAAACCCTTTTGGTGCATTATACAGGAAAGATTAGGCCCTCAATTTTGTTGCCTA 273 *** ** *********** ******************** * *********** ** *** consensus_15915#2 CATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGGCAGACTCTATCTT 305 consensus_15915#3 CATGAATTCAATACCCAATTAATTGGGAGCTCCCATTGGTAAGCTGG-AGACTCTATCTT 312 consensus_15915#0 CATGAATTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGC-AGACTCTATCTT 354 consensus_15915#1 CATGAGTTCAATACCCAATTAATTGGTAGCTCCCATTGATAAGCTGC-AGACTCTATCTT 332 ***** ******************** *********** ******* ************ consensus_15915#2 CCATCTCTTTCCAATCTTTCTTGGACACGGNTCCGAGCCGGNCTTGGGCTGGAGGCTTCG 365 consensus_15915#3 C-ATCTCTTTC-AATCTTTCTT-------------------------------------- 332 consensus_15915#0 C-ATCTCTTTC-AATCTTTCTTG-ACACGGTTCCGAGCCGCCTTGGCTGAGCTCGATCGC 411 consensus_15915#1 C-ATCTGTTTC-AATCTTTCTTG-ACACGGTTCCGAGCCACCTTGGCTGAGCTCGATCGC 389 * **** **** ********** consensus_15915#2 GATCGCTCTGGANTGGCGGAGAACATGGATGGAAGACATGGCATGACCGGCGNTCACCAG 425 consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGG 471 consensus_15915#1 TCTGACTGCGAGAACATGATGAAGACATGCATGACCGCCGTCACCAGTGCGAGCCCAAGG 449 consensus_15915#2 TGGGGAGCCCAAGGGGCCGG---------------------------------------- 445 consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 CCCGTAAACCCGACTCCTTTCCATGTCGACAGGAGTTGAGTCCATAGGAAGAGCTTGACG 531 consensus_15915#1 CCCGTAAACCCGACTC-------------------------------------------- 465 consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 GCGCCATATAAAAGGAGACATGACCAAAACAAAGTCACCAGCAATGATTTTACTGGGCGG 591 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 CCAATTGGTCTAATCTCCTCATCAAAAGTGCCTGTCGCCAAATGCTTATCCAGTAATGCA 651 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TCCTTTGCTACAAAGATGTCTTTGCACCATTTTGAAACATCGTCTTCTGACTTTGGCATC 711 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TCACTCATTGCATGACGTTTCATGCGAACATGTACCACTGAAGATTGCCCTTTCAAAATC 771 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 CGCAGCATTGTTGGTTGAGGTGAATCTTTTGGAATAATTACTGTTGTATCATAAATAGCT 831 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 GGAACAAAATCCCGCATAATAGTTACAGCTGATACAAATCCCTTTGTACGTGGAATCAAT 891 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 ACATTTCTGGGTGCTGGCAAACCCTGTGAAACAGCATACTCCTGAGCTGCTAGAAGCTTT 951 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 GCTGGAGTAAAGCGAGTGCCCTCAACAAAAAGGGCTAGCCAAAATGGTCTGGGGAAGTCC 1011 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TTCAACCTTTGGAGGCCCCATTTCAATGTCTTTTCATCCTTTGCCCAGCTCCTTTCCAAA 1071 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 AAGAGGTATTCTGCAAACCACATGGACCAGCCAATAACTGGAAGGAATTTCGATGATTTC 1131 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TTCATAACAGCAAGTGTACTTCCAAGGCATCCTGAGCGCTGTGCCAAAATCCACCCAATA 1191 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 AGCCAATCGATATCGCTCCGATGATTTGATATGACAAGTGCATGCTCATTCCCCATTGCC 1251 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 TTGTAAGTTTCGTCATCAGCATGCAGTTGTATCTTAACTCCTGCCCACCAATCCACAAGC 1311 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------------------ consensus_15915#3 ------------------------------------------------------------ consensus_15915#0 CAGACCAGCTGAAGCCACAGCAGCTCGGCCAAGAACCTGTTGATCCGCCGGTACAAGCTC 1371 consensus_15915#1 ------------------------------------------------------------ consensus_15915#2 ------------------------------------------------- consensus_15915#3 ------------------------------------------------- consensus_15915#0 TTCGAGAACGGCCTTATCGAGAGAAACAGGACGGCCTGGATGGCGTTGA 1420 consensus_15915#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||